Strain Fitness in Sphingobium sp. HT1-2 around GFF5378

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,359,738	+		GFF5376	0.82	-1.1
5,359,756	-		GFF5376	0.83	-1.3
5,359,756	-		GFF5376	0.83	+1.2
5,359,764	-		GFF5376	0.83	-1.5
5,359,767	-		GFF5376	0.84	-0.5
5,359,772	+		GFF5376	0.84	-2.6
5,359,780	-		GFF5376	0.84	-0.0
5,359,780	-		GFF5376	0.84	+0.2
5,359,780	-		GFF5376	0.84	+0.4
5,359,782	+		GFF5376	0.85	+2.0
5,359,798	+		GFF5376	0.86	-0.6
5,359,830	-		GFF5376	0.88	+0.1
5,359,833	-		GFF5376	0.88	-0.4
5,359,836	+		GFF5376	0.88	-1.0
5,359,844	-		GFF5376	0.89	-0.4
5,359,844	-		GFF5376	0.89	+0.1
5,359,853	-		GFF5376	0.90	-2.3
5,359,853	-		GFF5376	0.90	-0.8
5,359,858	+				-0.7
5,359,858	+				-0.5
5,359,864	-				+1.3
5,359,867	-				-0.2
5,359,867	-				-0.4
5,359,867	-				+0.1
5,359,875	+				-0.1
5,359,875	+				+0.1
5,359,875	+				+0.4
5,359,875	+				+0.4
5,359,875	+				+0.4
5,359,883	-				-1.2
5,359,883	-				+1.0
5,359,883	-				-1.0
5,359,883	-				+0.1
5,359,883	-				-0.0
5,359,902	+				-0.5
5,359,915	-				+0.3
5,359,917	+				-0.3
5,359,917	+				-0.4
5,359,917	+				+1.3
5,359,917	+				-0.0
5,359,917	+				-0.8
5,359,917	+				-1.6
5,359,917	+				-0.5
5,359,920	-				+1.3
5,359,924	+				-0.4
5,359,925	-				+1.4
5,359,925	-				+1.0
5,359,925	-				+0.8
5,359,925	-				-0.4
5,359,932	-				-0.5
5,359,932	-				-2.4
5,359,935	+				-0.5
5,359,935	+				+0.3
5,359,935	+				-0.9
5,359,935	+				-1.5
5,359,935	+				+0.3
5,359,935	+				-0.5
5,359,935	+				-2.1
5,359,935	+				+0.8
5,359,935	+				-2.8
5,359,935	+				-0.4
5,359,935	+				-1.3
5,359,935	+				+1.0
5,359,935	+				+0.3
5,359,935	+				-2.9
5,359,935	+				-1.6
5,359,935	+				-0.3
5,359,935	+				-1.5
5,359,935	+				+0.4
5,359,935	+				-0.8
5,359,935	+				-0.8
5,359,935	+				-1.0
5,359,935	+				+1.0
5,359,935	+				+0.8
5,359,935	+				-1.7
5,359,937	+				-0.1
5,359,937	+				+0.9
5,359,937	+				-1.5
5,359,943	-				+0.4
5,359,943	-				+0.2
5,359,943	-				-2.6
5,359,943	-				-0.8
5,359,943	-				-1.5
5,359,943	-				+0.6
5,359,943	-				+1.4
5,359,943	-				-1.7
5,359,943	-				-1.8
5,359,943	-				-0.2
5,359,943	-				+0.5
5,359,943	-				-0.4
5,359,943	-				+1.1
5,359,943	-				-0.8
5,359,943	-				-1.7
5,359,943	-				+0.3
5,359,945	-				+0.1
5,359,949	-				+0.7
5,359,950	-				-0.5
5,359,955	-				+0.2
5,359,955	-				-0.5
5,359,965	+				+0.5
5,359,974	+				-0.0
5,359,975	+				+1.3
5,359,980	+				-1.5
5,359,981	-				+0.5
5,359,983	-				-0.3
5,359,983	-				-2.4
5,359,983	-				+0.6
5,359,988	-				+0.1
5,359,992	+				+0.0
5,359,992	+				+0.5
5,359,992	+				+0.7
5,359,992	+				-0.1
5,359,992	+				-0.9
5,359,992	+				-1.2
5,359,992	+				-2.2
5,359,992	+				-0.1
5,359,992	+				-2.0
5,359,992	+				+0.0
5,359,992	+				-1.4
5,359,992	+				+0.1
5,359,992	+				-0.2
5,359,992	+				+0.2
5,359,992	+				-2.0
5,359,992	+				+0.3
5,359,992	+				-1.0
5,359,992	+				-0.7
5,359,992	+				-0.0
5,359,992	+				+0.8
5,359,992	+				-0.0
5,359,992	+				+1.4
5,359,992	+				-1.5
5,359,992	+				-1.1
5,359,992	+				+1.5
5,359,992	+				+0.1
5,359,992	+				+1.0
5,359,992	+				+1.0
5,359,992	+				+0.1
5,359,992	+				-0.2
5,359,992	+				+0.6
5,359,999	+				+0.2
5,360,000	-				-0.8
5,360,000	-				+0.4
5,360,000	-				-0.1
5,360,000	-				+0.1
5,360,000	-				+1.0
5,360,000	-				-1.0
5,360,000	-				+0.4
5,360,000	-				-0.6
5,360,000	-				-0.3
5,360,000	-				+1.3
5,360,000	-				-1.3
5,360,000	-				+0.1
5,360,000	-				-0.7
5,360,000	-				+0.3
5,360,000	-				+0.3
5,360,000	-				-0.7
5,360,000	-				-0.0
5,360,000	-				+0.3
5,360,000	-				+1.4
5,360,000	-				+0.4
5,360,000	-				+1.4
5,360,001	-				+0.4
5,360,004	+				+1.0
5,360,006	+				-0.4
5,360,007	-				-0.7
5,360,012	-				-1.9
5,360,017	-				-0.4
5,360,017	-				-0.6
5,360,017	-				+0.8
5,360,017	-				-1.4
5,360,017	-				-0.4
5,360,017	-				+0.2
5,360,017	-				-0.2
5,360,017	-				-0.4
5,360,017	-				+0.0
5,360,017	-				-0.3
5,360,017	-				-1.6
5,360,017	-				+0.6
5,360,017	-				-1.7
5,360,017	-				+1.1
5,360,017	-				-0.5
5,360,017	-				-1.8
5,360,017	-				-0.1
5,360,017	-				+0.7
5,360,017	-				-2.8
5,360,017	-				-0.6
5,360,032	-				+0.8
5,360,039	-				-0.2
5,360,039	-				-0.7
5,360,039	-				+1.6
5,360,039	-				-0.4
5,360,039	-				-0.1
5,360,047	-				-1.1
5,360,148	+				-0.7
5,360,170	+				+0.7
5,360,201	+				+0.4
5,360,201	+				+0.1
5,360,201	+				+0.5
5,360,209	-				-0.5
5,360,209	-				-0.6
5,360,214	-				+0.5
5,360,216	+				+0.1
5,360,216	+				+1.1
5,360,224	-				+0.1
5,360,227	-				-0.0
5,360,232	+				-1.6
5,360,232	+				+1.1
5,360,232	+				-1.6
5,360,232	+				-0.4
5,360,232	+				+0.3
5,360,232	+				+0.3
5,360,232	+				-0.2
5,360,232	-				+1.1
5,360,240	+				+0.6
5,360,240	-				+0.3
5,360,240	-				-0.5
5,360,242	+				+0.4
5,360,248	-				-1.3
5,360,248	-				+0.1
5,360,248	-				-1.6
5,360,248	-				-2.7
5,360,250	-				+1.4
5,360,250	-				-0.2
5,360,255	+				-0.0
5,360,260	-				+1.5
5,360,268	+				-0.3
5,360,276	-				-0.0
5,360,295	-				-1.2
5,360,309	+		GFF5377	0.12	-0.8
5,360,319	+		GFF5377	0.14	-0.4
5,360,344	+		GFF5377	0.20	-0.3
5,360,344	+		GFF5377	0.20	+0.9
5,360,378	+		GFF5377	0.27	-1.0
5,360,389	+		GFF5377	0.29	-0.3
5,360,414	-		GFF5377	0.34	-0.0
5,360,427	+		GFF5377	0.37	-1.9
5,360,479	+		GFF5377	0.47	+1.7
5,360,498	+		GFF5377	0.51	-0.1
5,360,533	+		GFF5377	0.58	+0.8
5,360,533	+		GFF5377	0.58	-0.2
5,360,541	-		GFF5377	0.60	+0.1
5,360,578	+		GFF5377	0.68	+0.7
5,360,586	-		GFF5377	0.69	+0.3
5,360,586	-		GFF5377	0.69	+0.2
5,360,615	-		GFF5377	0.75	+0.0
5,360,642	-		GFF5377	0.81	-2.0
5,360,645	-		GFF5377	0.81	+0.5
5,360,865	+		GFF5378	0.81	-1.8
5,360,926	+				+1.0
5,360,944	+				-0.6
5,360,944	+				-0.8
5,360,986	+				-1.7
5,360,996	+				+0.2
5,360,996	+				-1.4
5,360,996	+				-1.3
5,361,000	+				-0.6
5,361,000	+				-1.6
5,361,049	+		GFF5379	0.51	-0.3
5,361,055	+		GFF5379	0.58	+0.1
5,361,056	+		GFF5379	0.60	+0.8
5,361,056	+		GFF5379	0.60	+0.1
5,361,063	+		GFF5379	0.69	-0.5
5,361,063	+		GFF5379	0.69	-0.4
5,361,063	+		GFF5379	0.69	-1.6
5,361,069	+		GFF5379	0.77	-2.4
5,361,083	+				-0.8
5,361,084	+				-0.8
5,361,084	+				-0.4
5,361,084	+				-0.4
5,361,084	+				-0.9
5,361,090	+				-0.6
5,361,091	+				+0.1
5,361,091	+				-0.6
5,361,091	+				-1.9
5,361,139	+		GFF5380	0.58	+1.1
5,361,147	+		GFF5380	0.68	-0.7
5,361,147	+		GFF5380	0.68	+0.1
5,361,192	+				-2.2
5,361,211	+				-1.5
5,361,211	+				+0.3
5,361,385	+				-1.5
5,361,387	+				+1.6
5,361,387	+				+0.8
5,361,387	+				+0.6
5,361,426	+				-1.0
5,361,442	+				+0.8
5,361,447	+				+0.3
5,361,457	+				-0.4
5,361,457	+				-1.2
5,361,457	+				-1.2
5,361,457	+				-0.8
5,361,471	+				+0.5
5,361,471	+				-0.4
5,361,491	+				+0.2
5,361,491	+				-1.3
5,361,498	+				-1.4
5,361,505	+				-1.9
5,361,517	+				-1.5
5,361,517	+				-1.1
5,361,517	+				-0.6
5,361,517	+				-1.7
5,361,522	+				-0.2
5,361,530	+				+0.5
5,361,538	+				-0.8
5,361,557	+				-1.7
5,361,557	+				-0.3
5,361,557	+				+0.8
5,361,557	+				-1.7
5,361,557	+				-2.0
5,361,562	+				+0.9
5,361,562	+				-2.4
5,361,567	+				-1.7
5,361,567	+				-0.1
5,361,567	+				-0.0
5,361,567	+				-0.2
5,361,567	+				-0.8
5,361,567	+				+0.7
5,361,567	+				-1.8
5,361,567	+				-1.9
5,361,572	+				-1.8
5,361,577	+				-2.6
5,361,577	+				-1.8
5,361,577	+				-1.3
5,361,577	+				-1.5
5,361,577	+				+0.8
5,361,577	+				-1.0
5,361,602	+				-0.3
5,361,603	+				-1.4
5,361,603	+				-2.0
5,361,603	+				-0.6
5,361,603	+				-0.3
5,361,621	+				-0.1
5,361,638	+				-2.6
5,361,680	+				-1.8
5,361,736	+				+0.5
5,361,785	+		GFF5381	0.11	-1.6
5,361,785	+		GFF5381	0.11	-0.1
5,361,785	+		GFF5381	0.11	-0.2
5,361,785	+		GFF5381	0.11	-0.6
5,361,785	+		GFF5381	0.11	-0.5
5,361,785	+		GFF5381	0.11	-0.7
5,361,785	+		GFF5381	0.11	+0.7
5,361,785	+		GFF5381	0.11	-0.0
5,361,785	+		GFF5381	0.11	-1.3
5,361,785	+		GFF5381	0.11	-0.9
5,361,785	+		GFF5381	0.11	+1.0
5,361,785	+		GFF5381	0.11	+0.3
5,361,785	+		GFF5381	0.11	+0.4
5,361,790	+		GFF5381	0.11	-0.0
5,361,793	-		GFF5381	0.11	-1.4
5,361,803	+		GFF5381	0.12	-2.0
5,361,835	+		GFF5381	0.13	-0.8
5,361,844	+		GFF5381	0.13	+1.0
5,361,844	+		GFF5381	0.13	-1.6
5,361,846	+		GFF5381	0.13	+0.1
5,361,872	+		GFF5381	0.14	-0.3
5,361,878	+		GFF5381	0.14	+0.5
5,361,878	+		GFF5381	0.14	-0.9
5,361,883	+		GFF5381	0.14	-0.0
5,361,885	+		GFF5381	0.15	+0.5
5,361,885	+		GFF5381	0.15	+0.3
5,361,886	-		GFF5381	0.15	-0.6
5,361,888	+		GFF5381	0.15	-0.2