Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5366 and GFF5367 are separated by 87 nucleotides GFF5367 and GFF5368 are separated by 127 nucleotides GFF5368 and GFF5369 are separated by 36 nucleotides GFF5369 and GFF5370 are separated by 221 nucleotides
GFF5366 - MBL-fold metallo-hydrolase superfamily, at 5,350,672 to 5,351,589
GFF5366
GFF5367 - Alkyl hydroperoxide reductase subunit C-like protein, at 5,351,677 to 5,352,018
GFF5367
GFF5368 - Mobile element protein, at 5,352,146 to 5,352,409
GFF5368
GFF5369 - hypothetical protein, at 5,352,446 to 5,352,682
GFF5369
GFF5370 - hypothetical protein, at 5,352,904 to 5,353,506
GFF5370
Position (kb) 5351
5352
5353 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.682 kb on - strand at 5350.691 kb on + strand at 5350.691 kb on + strand at 5350.692 kb on - strand at 5350.699 kb on - strand at 5350.709 kb on + strand at 5350.717 kb on - strand at 5350.722 kb on - strand at 5350.724 kb on + strand at 5350.739 kb on + strand at 5350.747 kb on - strand at 5350.750 kb on + strand at 5350.758 kb on - strand at 5350.767 kb on + strand, within GFF5366 at 5350.783 kb on + strand, within GFF5366 at 5350.865 kb on + strand, within GFF5366 at 5350.875 kb on + strand, within GFF5366 at 5350.875 kb on + strand, within GFF5366 at 5350.899 kb on + strand, within GFF5366 at 5350.976 kb on + strand, within GFF5366 at 5350.986 kb on + strand, within GFF5366 at 5350.986 kb on - strand, within GFF5366 at 5350.988 kb on - strand, within GFF5366 at 5350.993 kb on + strand, within GFF5366 at 5350.994 kb on - strand, within GFF5366 at 5351.019 kb on + strand, within GFF5366 at 5351.019 kb on + strand, within GFF5366 at 5351.044 kb on - strand, within GFF5366 at 5351.241 kb on - strand, within GFF5366 at 5351.303 kb on + strand, within GFF5366 at 5351.303 kb on + strand, within GFF5366 at 5351.303 kb on + strand, within GFF5366 at 5351.311 kb on - strand, within GFF5366 at 5351.311 kb on - strand, within GFF5366 at 5351.311 kb on - strand, within GFF5366 at 5351.311 kb on - strand, within GFF5366 at 5351.326 kb on - strand, within GFF5366 at 5351.362 kb on - strand, within GFF5366 at 5351.409 kb on + strand, within GFF5366 at 5351.423 kb on + strand, within GFF5366 at 5351.428 kb on + strand, within GFF5366 at 5351.428 kb on + strand, within GFF5366 at 5351.451 kb on + strand, within GFF5366 at 5351.456 kb on - strand, within GFF5366 at 5351.470 kb on + strand, within GFF5366 at 5351.478 kb on + strand, within GFF5366 at 5351.480 kb on + strand, within GFF5366 at 5351.480 kb on + strand, within GFF5366 at 5351.486 kb on - strand, within GFF5366 at 5351.488 kb on - strand, within GFF5366 at 5351.488 kb on - strand, within GFF5366 at 5351.488 kb on - strand, within GFF5366 at 5351.488 kb on - strand, within GFF5366 at 5351.505 kb on - strand at 5351.509 kb on + strand at 5351.516 kb on + strand at 5351.516 kb on + strand at 5351.521 kb on + strand at 5351.521 kb on + strand at 5351.523 kb on + strand at 5351.529 kb on - strand at 5351.529 kb on - strand at 5351.529 kb on - strand at 5351.554 kb on - strand at 5351.645 kb on + strand at 5351.722 kb on - strand, within GFF5367 at 5351.722 kb on - strand, within GFF5367 at 5351.754 kb on - strand, within GFF5367 at 5351.829 kb on + strand, within GFF5367 at 5351.892 kb on - strand, within GFF5367 at 5351.926 kb on - strand, within GFF5367 at 5351.926 kb on - strand, within GFF5367 at 5351.929 kb on + strand, within GFF5367 at 5351.940 kb on + strand, within GFF5367 at 5351.940 kb on + strand, within GFF5367 at 5351.940 kb on + strand, within GFF5367 at 5351.940 kb on + strand, within GFF5367 at 5351.940 kb on + strand, within GFF5367 at 5351.940 kb on + strand, within GFF5367 at 5351.948 kb on - strand, within GFF5367 at 5351.948 kb on - strand, within GFF5367 at 5351.948 kb on - strand, within GFF5367 at 5351.948 kb on - strand, within GFF5367 at 5351.948 kb on - strand, within GFF5367 at 5352.025 kb on - strand at 5352.504 kb on + strand, within GFF5369 at 5352.533 kb on + strand, within GFF5369 at 5352.577 kb on + strand, within GFF5369 at 5352.674 kb on + strand at 5352.674 kb on + strand at 5352.724 kb on + strand at 5352.739 kb on + strand at 5352.811 kb on - strand at 5352.829 kb on - strand at 5352.829 kb on - strand at 5352.924 kb on - strand at 5352.930 kb on + strand at 5352.930 kb on + strand at 5352.930 kb on + strand at 5352.938 kb on - strand at 5352.938 kb on - strand at 5352.938 kb on - strand at 5352.938 kb on - strand at 5352.943 kb on - strand at 5352.945 kb on + strand at 5352.945 kb on - strand at 5352.950 kb on + strand at 5352.953 kb on - strand at 5352.968 kb on + strand, within GFF5370 at 5352.968 kb on + strand, within GFF5370 at 5352.968 kb on + strand, within GFF5370 at 5352.968 kb on + strand, within GFF5370 at 5352.968 kb on + strand, within GFF5370 at 5352.968 kb on + strand, within GFF5370 at 5352.968 kb on + strand, within GFF5370 at 5352.968 kb on + strand, within GFF5370 at 5352.971 kb on - strand, within GFF5370 at 5352.976 kb on - strand, within GFF5370 at 5352.976 kb on - strand, within GFF5370 at 5352.976 kb on - strand, within GFF5370
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 5,350,677 - -0.3 5,350,677 - -0.9 5,350,677 - -0.4 5,350,677 - -1.0 5,350,677 - +0.6 5,350,677 - -0.7 5,350,677 - -3.3 5,350,677 - +0.6 5,350,677 - +0.1 5,350,677 - -0.4 5,350,677 - -1.0 5,350,677 - -0.9 5,350,677 - -1.0 5,350,677 - -0.0 5,350,682 - +0.9 5,350,691 + -1.8 5,350,691 + -1.0 5,350,692 - -0.2 5,350,699 - -0.8 5,350,709 + -0.6 5,350,717 - -1.3 5,350,722 - -0.4 5,350,724 + +1.0 5,350,739 + -1.4 5,350,747 - -0.7 5,350,750 + -0.1 5,350,758 - +0.0 5,350,767 + GFF5366 0.10 +0.0 5,350,783 + GFF5366 0.12 +0.1 5,350,865 + GFF5366 0.21 -1.4 5,350,875 + GFF5366 0.22 -1.6 5,350,875 + GFF5366 0.22 +0.3 5,350,899 + GFF5366 0.25 +0.0 5,350,976 + GFF5366 0.33 -0.5 5,350,986 + GFF5366 0.34 +0.6 5,350,986 - GFF5366 0.34 -0.3 5,350,988 - GFF5366 0.34 -1.3 5,350,993 + GFF5366 0.35 +0.8 5,350,994 - GFF5366 0.35 -2.1 5,351,019 + GFF5366 0.38 -0.0 5,351,019 + GFF5366 0.38 -1.1 5,351,044 - GFF5366 0.41 +1.7 5,351,241 - GFF5366 0.62 +0.4 5,351,303 + GFF5366 0.69 -1.7 5,351,303 + GFF5366 0.69 +0.8 5,351,303 + GFF5366 0.69 -0.2 5,351,311 - GFF5366 0.70 -1.1 5,351,311 - GFF5366 0.70 -0.5 5,351,311 - GFF5366 0.70 -0.4 5,351,311 - GFF5366 0.70 -0.2 5,351,326 - GFF5366 0.71 -0.7 5,351,362 - GFF5366 0.75 -0.9 5,351,409 + GFF5366 0.80 -0.8 5,351,423 + GFF5366 0.82 +0.1 5,351,428 + GFF5366 0.82 +0.1 5,351,428 + GFF5366 0.82 -1.2 5,351,451 + GFF5366 0.85 -1.7 5,351,456 - GFF5366 0.85 -1.4 5,351,470 + GFF5366 0.87 -0.6 5,351,478 + GFF5366 0.88 -0.1 5,351,480 + GFF5366 0.88 -0.3 5,351,480 + GFF5366 0.88 +0.2 5,351,486 - GFF5366 0.89 -0.9 5,351,488 - GFF5366 0.89 -0.8 5,351,488 - GFF5366 0.89 -1.1 5,351,488 - GFF5366 0.89 -2.8 5,351,488 - GFF5366 0.89 -0.9 5,351,505 - -1.1 5,351,509 + +0.1 5,351,516 + -0.3 5,351,516 + -1.3 5,351,521 + -2.6 5,351,521 + -0.4 5,351,523 + -1.0 5,351,529 - -1.5 5,351,529 - -0.4 5,351,529 - -1.1 5,351,554 - -0.4 5,351,645 + -1.1 5,351,722 - GFF5367 0.13 -0.9 5,351,722 - GFF5367 0.13 +0.7 5,351,754 - GFF5367 0.23 -0.4 5,351,829 + GFF5367 0.44 -2.2 5,351,892 - GFF5367 0.63 -1.0 5,351,926 - GFF5367 0.73 +0.1 5,351,926 - GFF5367 0.73 -0.2 5,351,929 + GFF5367 0.74 -0.5 5,351,940 + GFF5367 0.77 -1.0 5,351,940 + GFF5367 0.77 -0.4 5,351,940 + GFF5367 0.77 -0.3 5,351,940 + GFF5367 0.77 -1.4 5,351,940 + GFF5367 0.77 +0.2 5,351,940 + GFF5367 0.77 +0.1 5,351,948 - GFF5367 0.79 -0.2 5,351,948 - GFF5367 0.79 -0.7 5,351,948 - GFF5367 0.79 -0.1 5,351,948 - GFF5367 0.79 -0.4 5,351,948 - GFF5367 0.79 -1.1 5,352,025 - +0.5 5,352,504 + GFF5369 0.24 +0.1 5,352,533 + GFF5369 0.37 +0.9 5,352,577 + GFF5369 0.55 +1.0 5,352,674 + -1.1 5,352,674 + -0.3 5,352,724 + -0.3 5,352,739 + -0.0 5,352,811 - -0.8 5,352,829 - +0.3 5,352,829 - +0.4 5,352,924 - +0.9 5,352,930 + -2.0 5,352,930 + +0.2 5,352,930 + -0.6 5,352,938 - +0.7 5,352,938 - +0.8 5,352,938 - -0.5 5,352,938 - -0.4 5,352,943 - -0.1 5,352,945 + +0.1 5,352,945 - +0.2 5,352,950 + +1.1 5,352,953 - +1.1 5,352,968 + GFF5370 0.11 +0.4 5,352,968 + GFF5370 0.11 +0.6 5,352,968 + GFF5370 0.11 -1.0 5,352,968 + GFF5370 0.11 -0.6 5,352,968 + GFF5370 0.11 +1.6 5,352,968 + GFF5370 0.11 -0.4 5,352,968 + GFF5370 0.11 +1.8 5,352,968 + GFF5370 0.11 +0.3 5,352,971 - GFF5370 0.11 +1.1 5,352,976 - GFF5370 0.12 +0.4 5,352,976 - GFF5370 0.12 +1.0 5,352,976 - GFF5370 0.12 +1.6
Or see this region's nucleotide sequence