Strain Fitness in Sphingobium sp. HT1-2 around GFF535

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF533 and GFF534 are separated by 13 nucleotidesGFF534 and GFF535 overlap by 1 nucleotidesGFF535 and GFF536 are separated by 14 nucleotidesGFF536 and GFF537 are separated by 3 nucleotides GFF533 - 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25), at 530,195 to 530,980 GFF533 GFF534 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5), at 530,994 to 531,701 GFF534 GFF535 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5), at 531,701 to 532,348 GFF535 GFF536 - Ferredoxin, 2Fe-2S, at 532,363 to 532,680 GFF536 GFF537 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 532,684 to 533,454 GFF537 Position (kb) 531 532 533Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 530.715 kb on + strand, within GFF533at 530.722 kb on + strand, within GFF533at 530.758 kb on + strand, within GFF533at 530.760 kb on + strand, within GFF533at 530.763 kb on + strand, within GFF533at 530.766 kb on - strand, within GFF533at 530.768 kb on + strand, within GFF533at 530.771 kb on - strand, within GFF533at 530.771 kb on - strand, within GFF533at 530.771 kb on - strand, within GFF533at 530.771 kb on - strand, within GFF533at 530.771 kb on - strand, within GFF533at 530.771 kb on - strand, within GFF533at 530.771 kb on - strand, within GFF533at 530.793 kb on - strand, within GFF533at 530.805 kb on + strand, within GFF533at 530.806 kb on - strand, within GFF533at 530.818 kb on + strand, within GFF533at 530.826 kb on - strand, within GFF533at 530.852 kb on + strand, within GFF533at 530.893 kb on + strand, within GFF533at 530.916 kb on + strandat 530.916 kb on + strandat 530.921 kb on + strandat 530.924 kb on - strandat 530.924 kb on - strandat 530.924 kb on - strandat 530.943 kb on + strandat 530.943 kb on + strandat 530.951 kb on - strandat 530.951 kb on - strandat 530.951 kb on - strandat 530.955 kb on - strandat 530.956 kb on - strandat 530.956 kb on - strandat 530.991 kb on - strandat 531.033 kb on + strandat 531.070 kb on + strand, within GFF534at 531.070 kb on + strand, within GFF534at 531.070 kb on + strand, within GFF534at 531.070 kb on + strand, within GFF534at 531.070 kb on + strand, within GFF534at 531.078 kb on - strand, within GFF534at 531.078 kb on - strand, within GFF534at 531.078 kb on - strand, within GFF534at 531.078 kb on - strand, within GFF534at 531.078 kb on - strand, within GFF534at 531.088 kb on + strand, within GFF534at 531.091 kb on + strand, within GFF534at 531.169 kb on + strand, within GFF534at 531.169 kb on + strand, within GFF534at 531.220 kb on + strand, within GFF534at 531.228 kb on - strand, within GFF534at 531.235 kb on + strand, within GFF534at 531.243 kb on - strand, within GFF534at 531.245 kb on + strand, within GFF534at 531.291 kb on - strand, within GFF534at 531.345 kb on + strand, within GFF534at 531.367 kb on + strand, within GFF534at 531.439 kb on + strand, within GFF534at 531.439 kb on + strand, within GFF534at 531.439 kb on + strand, within GFF534at 531.439 kb on + strand, within GFF534at 531.444 kb on + strand, within GFF534at 531.447 kb on - strand, within GFF534at 531.452 kb on - strand, within GFF534at 531.463 kb on - strand, within GFF534at 531.497 kb on + strand, within GFF534at 531.497 kb on + strand, within GFF534at 531.497 kb on + strand, within GFF534at 531.497 kb on + strand, within GFF534at 531.505 kb on - strand, within GFF534at 531.505 kb on - strand, within GFF534at 531.522 kb on - strand, within GFF534at 531.545 kb on + strand, within GFF534at 531.545 kb on + strand, within GFF534at 531.545 kb on + strand, within GFF534at 531.550 kb on + strand, within GFF534at 531.553 kb on - strand, within GFF534at 531.554 kb on + strand, within GFF534at 531.581 kb on + strand, within GFF534at 531.584 kb on - strand, within GFF534at 531.587 kb on + strand, within GFF534at 531.594 kb on - strand, within GFF534at 531.594 kb on - strand, within GFF534at 531.601 kb on - strand, within GFF534at 531.612 kb on + strand, within GFF534at 531.636 kb on + strandat 531.644 kb on - strandat 531.647 kb on - strandat 531.777 kb on - strand, within GFF535at 531.810 kb on - strand, within GFF535at 531.822 kb on + strand, within GFF535at 531.824 kb on - strand, within GFF535at 531.873 kb on - strand, within GFF535at 531.873 kb on - strand, within GFF535at 531.887 kb on + strand, within GFF535at 531.887 kb on + strand, within GFF535at 531.888 kb on + strand, within GFF535at 531.888 kb on + strand, within GFF535at 531.896 kb on - strand, within GFF535at 531.898 kb on + strand, within GFF535at 531.901 kb on - strand, within GFF535at 531.901 kb on - strand, within GFF535at 531.906 kb on - strand, within GFF535at 531.932 kb on - strand, within GFF535at 531.956 kb on + strand, within GFF535at 531.963 kb on + strand, within GFF535at 531.964 kb on - strand, within GFF535at 532.003 kb on + strand, within GFF535at 532.043 kb on + strand, within GFF535at 532.066 kb on + strand, within GFF535at 532.073 kb on + strand, within GFF535at 532.073 kb on + strand, within GFF535at 532.080 kb on - strand, within GFF535at 532.081 kb on - strand, within GFF535at 532.090 kb on + strand, within GFF535at 532.096 kb on + strand, within GFF535at 532.104 kb on - strand, within GFF535at 532.124 kb on + strand, within GFF535at 532.162 kb on - strand, within GFF535at 532.186 kb on - strand, within GFF535at 532.203 kb on - strand, within GFF535at 532.218 kb on - strand, within GFF535at 532.250 kb on - strand, within GFF535at 532.254 kb on - strand, within GFF535at 532.256 kb on + strand, within GFF535at 532.257 kb on + strand, within GFF535at 532.257 kb on + strand, within GFF535at 532.265 kb on - strand, within GFF535at 532.265 kb on - strand, within GFF535at 532.265 kb on - strand, within GFF535at 532.265 kb on - strand, within GFF535at 532.265 kb on - strand, within GFF535at 532.265 kb on - strand, within GFF535at 532.265 kb on - strand, within GFF535at 532.265 kb on - strand, within GFF535at 532.265 kb on - strand, within GFF535at 532.279 kb on - strand, within GFF535at 532.363 kb on - strandat 532.373 kb on - strandat 532.378 kb on + strandat 532.378 kb on + strandat 532.428 kb on + strand, within GFF536at 532.431 kb on - strand, within GFF536at 532.442 kb on - strand, within GFF536at 532.442 kb on - strand, within GFF536at 532.464 kb on - strand, within GFF536at 532.465 kb on - strand, within GFF536at 532.479 kb on + strand, within GFF536at 532.527 kb on + strand, within GFF536at 532.527 kb on + strand, within GFF536at 532.535 kb on - strand, within GFF536at 532.535 kb on - strand, within GFF536at 532.573 kb on - strand, within GFF536at 532.609 kb on + strand, within GFF536at 532.609 kb on + strand, within GFF536at 532.617 kb on - strand, within GFF536at 532.623 kb on + strand, within GFF536at 532.651 kb on - strandat 532.656 kb on - strandat 532.674 kb on + strandat 532.674 kb on + strandat 532.682 kb on - strandat 532.688 kb on + strandat 532.688 kb on + strandat 532.688 kb on + strandat 532.688 kb on + strandat 532.689 kb on - strandat 532.689 kb on - strandat 532.689 kb on - strandat 532.693 kb on + strandat 532.696 kb on - strandat 532.696 kb on - strandat 532.696 kb on - strandat 532.696 kb on - strandat 532.698 kb on + strandat 532.698 kb on + strandat 532.706 kb on - strandat 532.706 kb on - strandat 532.721 kb on - strandat 532.721 kb on - strandat 532.721 kb on - strandat 532.721 kb on - strandat 532.721 kb on - strandat 532.759 kb on + strandat 532.761 kb on + strand, within GFF537at 532.761 kb on + strand, within GFF537at 532.831 kb on + strand, within GFF537at 532.833 kb on + strand, within GFF537at 532.834 kb on - strand, within GFF537at 532.838 kb on + strand, within GFF537at 532.841 kb on - strand, within GFF537at 532.891 kb on + strand, within GFF537at 532.899 kb on - strand, within GFF537at 532.920 kb on - strand, within GFF537at 532.936 kb on - strand, within GFF537at 532.991 kb on + strand, within GFF537at 532.993 kb on - strand, within GFF537at 533.034 kb on + strand, within GFF537at 533.043 kb on - strand, within GFF537at 533.045 kb on - strand, within GFF537at 533.050 kb on + strand, within GFF537at 533.050 kb on + strand, within GFF537at 533.050 kb on + strand, within GFF537at 533.050 kb on + strand, within GFF537at 533.050 kb on - strand, within GFF537at 533.058 kb on - strand, within GFF537at 533.082 kb on - strand, within GFF537at 533.088 kb on + strand, within GFF537at 533.096 kb on - strand, within GFF537at 533.100 kb on + strand, within GFF537at 533.102 kb on - strand, within GFF537at 533.132 kb on + strand, within GFF537at 533.168 kb on + strand, within GFF537at 533.190 kb on + strand, within GFF537at 533.195 kb on + strand, within GFF537at 533.195 kb on + strand, within GFF537at 533.203 kb on + strand, within GFF537at 533.203 kb on + strand, within GFF537at 533.203 kb on + strand, within GFF537at 533.203 kb on + strand, within GFF537at 533.203 kb on + strand, within GFF537at 533.203 kb on - strand, within GFF537at 533.203 kb on - strand, within GFF537at 533.208 kb on + strand, within GFF537at 533.208 kb on + strand, within GFF537at 533.211 kb on - strand, within GFF537at 533.211 kb on - strand, within GFF537at 533.211 kb on - strand, within GFF537at 533.211 kb on - strand, within GFF537at 533.211 kb on - strand, within GFF537at 533.211 kb on - strand, within GFF537at 533.216 kb on - strand, within GFF537at 533.216 kb on - strand, within GFF537at 533.216 kb on - strand, within GFF537at 533.240 kb on + strand, within GFF537at 533.240 kb on + strand, within GFF537at 533.240 kb on + strand, within GFF537at 533.248 kb on - strand, within GFF537at 533.252 kb on - strand, within GFF537at 533.276 kb on + strand, within GFF537at 533.276 kb on + strand, within GFF537at 533.276 kb on + strand, within GFF537at 533.276 kb on + strand, within GFF537at 533.283 kb on - strand, within GFF537at 533.301 kb on + strand, within GFF537at 533.310 kb on + strand, within GFF537at 533.318 kb on + strand, within GFF537at 533.326 kb on - strand, within GFF537at 533.326 kb on - strand, within GFF537at 533.346 kb on - strand, within GFF537

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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530,715 + GFF533 0.66 +1.1
530,722 + GFF533 0.67 +1.2
530,758 + GFF533 0.72 +0.0
530,760 + GFF533 0.72 -0.5
530,763 + GFF533 0.72 -0.9
530,766 - GFF533 0.73 -0.6
530,768 + GFF533 0.73 +0.3
530,771 - GFF533 0.73 +0.4
530,771 - GFF533 0.73 -1.6
530,771 - GFF533 0.73 -0.8
530,771 - GFF533 0.73 +1.7
530,771 - GFF533 0.73 +0.2
530,771 - GFF533 0.73 +1.8
530,771 - GFF533 0.73 -0.3
530,793 - GFF533 0.76 +0.2
530,805 + GFF533 0.78 +0.5
530,806 - GFF533 0.78 -0.3
530,818 + GFF533 0.79 -0.3
530,826 - GFF533 0.80 -0.9
530,852 + GFF533 0.84 -1.5
530,893 + GFF533 0.89 +0.8
530,916 + +1.5
530,916 + -0.4
530,921 + +0.2
530,924 - -0.1
530,924 - +0.1
530,924 - +1.0
530,943 + -0.5
530,943 + -1.9
530,951 - -0.7
530,951 - +0.3
530,951 - -0.3
530,955 - -1.5
530,956 - +0.9
530,956 - -1.4
530,991 - +0.5
531,033 + -1.4
531,070 + GFF534 0.11 +1.1
531,070 + GFF534 0.11 +0.3
531,070 + GFF534 0.11 -0.0
531,070 + GFF534 0.11 +1.0
531,070 + GFF534 0.11 -0.5
531,078 - GFF534 0.12 -0.0
531,078 - GFF534 0.12 +1.4
531,078 - GFF534 0.12 +2.1
531,078 - GFF534 0.12 +0.6
531,078 - GFF534 0.12 -0.7
531,088 + GFF534 0.13 -0.2
531,091 + GFF534 0.14 -3.5
531,169 + GFF534 0.25 +0.5
531,169 + GFF534 0.25 +0.5
531,220 + GFF534 0.32 -1.5
531,228 - GFF534 0.33 -0.3
531,235 + GFF534 0.34 +1.7
531,243 - GFF534 0.35 -0.6
531,245 + GFF534 0.35 -1.5
531,291 - GFF534 0.42 +0.7
531,345 + GFF534 0.50 -2.7
531,367 + GFF534 0.53 +1.2
531,439 + GFF534 0.63 +0.4
531,439 + GFF534 0.63 +0.6
531,439 + GFF534 0.63 +0.9
531,439 + GFF534 0.63 +0.5
531,444 + GFF534 0.64 -1.7
531,447 - GFF534 0.64 +0.3
531,452 - GFF534 0.65 -1.8
531,463 - GFF534 0.66 -0.1
531,497 + GFF534 0.71 -1.3
531,497 + GFF534 0.71 +0.2
531,497 + GFF534 0.71 -0.0
531,497 + GFF534 0.71 -0.0
531,505 - GFF534 0.72 -1.3
531,505 - GFF534 0.72 -0.6
531,522 - GFF534 0.75 -0.3
531,545 + GFF534 0.78 -2.4
531,545 + GFF534 0.78 -0.9
531,545 + GFF534 0.78 -0.7
531,550 + GFF534 0.79 +0.8
531,553 - GFF534 0.79 +0.9
531,554 + GFF534 0.79 +0.5
531,581 + GFF534 0.83 -2.5
531,584 - GFF534 0.83 -1.8
531,587 + GFF534 0.84 +1.2
531,594 - GFF534 0.85 +0.6
531,594 - GFF534 0.85 +0.3
531,601 - GFF534 0.86 +0.2
531,612 + GFF534 0.87 +0.8
531,636 + +0.6
531,644 - -1.0
531,647 - +1.0
531,777 - GFF535 0.12 +0.8
531,810 - GFF535 0.17 -0.0
531,822 + GFF535 0.19 -0.8
531,824 - GFF535 0.19 +0.9
531,873 - GFF535 0.27 -0.7
531,873 - GFF535 0.27 -1.5
531,887 + GFF535 0.29 -2.1
531,887 + GFF535 0.29 -1.5
531,888 + GFF535 0.29 +1.0
531,888 + GFF535 0.29 +0.4
531,896 - GFF535 0.30 -1.4
531,898 + GFF535 0.30 +0.0
531,901 - GFF535 0.31 -0.6
531,901 - GFF535 0.31 -1.9
531,906 - GFF535 0.32 -0.4
531,932 - GFF535 0.36 -0.7
531,956 + GFF535 0.39 -0.4
531,963 + GFF535 0.40 +1.1
531,964 - GFF535 0.41 -0.8
532,003 + GFF535 0.47 +0.4
532,043 + GFF535 0.53 -2.0
532,066 + GFF535 0.56 -0.8
532,073 + GFF535 0.57 +1.1
532,073 + GFF535 0.57 +0.4
532,080 - GFF535 0.58 -0.3
532,081 - GFF535 0.59 +0.0
532,090 + GFF535 0.60 -1.3
532,096 + GFF535 0.61 -0.1
532,104 - GFF535 0.62 +2.5
532,124 + GFF535 0.65 -0.6
532,162 - GFF535 0.71 +0.0
532,186 - GFF535 0.75 -2.0
532,203 - GFF535 0.77 +0.5
532,218 - GFF535 0.80 +1.0
532,250 - GFF535 0.85 -0.0
532,254 - GFF535 0.85 +0.1
532,256 + GFF535 0.86 +0.2
532,257 + GFF535 0.86 +1.6
532,257 + GFF535 0.86 +0.5
532,265 - GFF535 0.87 +0.6
532,265 - GFF535 0.87 +1.1
532,265 - GFF535 0.87 -1.6
532,265 - GFF535 0.87 -1.2
532,265 - GFF535 0.87 -0.6
532,265 - GFF535 0.87 -0.5
532,265 - GFF535 0.87 -0.6
532,265 - GFF535 0.87 +2.1
532,265 - GFF535 0.87 -0.9
532,279 - GFF535 0.89 -1.3
532,363 - -0.2
532,373 - -1.0
532,378 + +0.4
532,378 + +1.5
532,428 + GFF536 0.20 +0.3
532,431 - GFF536 0.21 +1.8
532,442 - GFF536 0.25 +1.2
532,442 - GFF536 0.25 +0.2
532,464 - GFF536 0.32 -1.7
532,465 - GFF536 0.32 -1.6
532,479 + GFF536 0.36 +0.3
532,527 + GFF536 0.52 -1.4
532,527 + GFF536 0.52 -0.3
532,535 - GFF536 0.54 -2.2
532,535 - GFF536 0.54 -0.6
532,573 - GFF536 0.66 -1.2
532,609 + GFF536 0.77 -0.0
532,609 + GFF536 0.77 -0.0
532,617 - GFF536 0.80 -0.2
532,623 + GFF536 0.82 -0.7
532,651 - -0.2
532,656 - -0.8
532,674 + -1.5
532,674 + +1.4
532,682 - +1.8
532,688 + +0.5
532,688 + -0.5
532,688 + -0.8
532,688 + +0.6
532,689 - +0.2
532,689 - +0.1
532,689 - +0.5
532,693 + -0.9
532,696 - -0.8
532,696 - -0.1
532,696 - -2.5
532,696 - -0.2
532,698 + -0.2
532,698 + -0.2
532,706 - +1.0
532,706 - +0.3
532,721 - +0.8
532,721 - -0.0
532,721 - -0.9
532,721 - +0.5
532,721 - -0.4
532,759 + +1.1
532,761 + GFF537 0.10 +1.5
532,761 + GFF537 0.10 -1.5
532,831 + GFF537 0.19 +1.7
532,833 + GFF537 0.19 -0.3
532,834 - GFF537 0.19 -0.6
532,838 + GFF537 0.20 +0.3
532,841 - GFF537 0.20 -0.7
532,891 + GFF537 0.27 +1.0
532,899 - GFF537 0.28 -0.6
532,920 - GFF537 0.31 +1.0
532,936 - GFF537 0.33 +0.6
532,991 + GFF537 0.40 +1.8
532,993 - GFF537 0.40 -1.1
533,034 + GFF537 0.45 +0.0
533,043 - GFF537 0.47 -0.0
533,045 - GFF537 0.47 -1.5
533,050 + GFF537 0.47 -0.5
533,050 + GFF537 0.47 +0.2
533,050 + GFF537 0.47 -1.8
533,050 + GFF537 0.47 +0.1
533,050 - GFF537 0.47 +0.1
533,058 - GFF537 0.49 +0.7
533,082 - GFF537 0.52 -0.7
533,088 + GFF537 0.52 +0.2
533,096 - GFF537 0.53 +0.2
533,100 + GFF537 0.54 -0.4
533,102 - GFF537 0.54 +1.1
533,132 + GFF537 0.58 +0.5
533,168 + GFF537 0.63 -0.5
533,190 + GFF537 0.66 +2.1
533,195 + GFF537 0.66 -1.0
533,195 + GFF537 0.66 -0.0
533,203 + GFF537 0.67 +0.9
533,203 + GFF537 0.67 -1.0
533,203 + GFF537 0.67 +0.0
533,203 + GFF537 0.67 +1.2
533,203 + GFF537 0.67 +0.2
533,203 - GFF537 0.67 -0.7
533,203 - GFF537 0.67 +2.9
533,208 + GFF537 0.68 -0.8
533,208 + GFF537 0.68 -0.2
533,211 - GFF537 0.68 -0.0
533,211 - GFF537 0.68 +0.2
533,211 - GFF537 0.68 +0.5
533,211 - GFF537 0.68 +0.7
533,211 - GFF537 0.68 +1.1
533,211 - GFF537 0.68 -0.4
533,216 - GFF537 0.69 -0.3
533,216 - GFF537 0.69 -1.2
533,216 - GFF537 0.69 +0.1
533,240 + GFF537 0.72 +0.1
533,240 + GFF537 0.72 +0.1
533,240 + GFF537 0.72 -0.5
533,248 - GFF537 0.73 +0.2
533,252 - GFF537 0.74 -1.0
533,276 + GFF537 0.77 +0.3
533,276 + GFF537 0.77 +0.4
533,276 + GFF537 0.77 +1.1
533,276 + GFF537 0.77 -0.5
533,283 - GFF537 0.78 +1.2
533,301 + GFF537 0.80 +1.2
533,310 + GFF537 0.81 -0.7
533,318 + GFF537 0.82 -0.8
533,326 - GFF537 0.83 -1.3
533,326 - GFF537 0.83 -1.0
533,346 - GFF537 0.86 +0.4

Or see this region's nucleotide sequence