Strain Fitness in Sphingobium sp. HT1-2 around GFF5343

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,333,550	+		GFF5340	0.29	-0.8
5,333,577	+		GFF5340	0.33	+1.1
5,333,585	-		GFF5340	0.35	-2.3
5,333,616	-		GFF5340	0.39	-2.0
5,333,634	+		GFF5340	0.42	+0.6
5,333,649	+		GFF5340	0.45	-1.1
5,333,649	+		GFF5340	0.45	-1.8
5,333,650	+		GFF5340	0.45	-1.9
5,333,657	-		GFF5340	0.46	-0.3
5,333,672	+		GFF5340	0.48	-1.9
5,333,673	+		GFF5340	0.48	-0.2
5,333,720	-		GFF5340	0.56	-0.4
5,333,720	-		GFF5340	0.56	+1.1
5,333,720	-		GFF5340	0.56	-0.4
5,333,722	-		GFF5340	0.56	-0.3
5,333,737	-		GFF5340	0.59	-1.1
5,333,748	+		GFF5340	0.60	-1.6
5,333,753	+		GFF5340	0.61	-0.2
5,333,753	+		GFF5340	0.61	-1.4
5,333,758	+		GFF5340	0.62	-0.6
5,333,758	+		GFF5340	0.62	+0.6
5,333,758	+		GFF5340	0.62	-0.5
5,333,761	-		GFF5340	0.62	-0.3
5,333,761	-		GFF5340	0.62	-0.6
5,333,761	-		GFF5340	0.62	+0.1
5,333,761	-		GFF5340	0.62	+0.1
5,333,761	-		GFF5340	0.62	-2.6
5,333,761	-		GFF5340	0.62	-2.0
5,333,764	-		GFF5340	0.63	-0.1
5,333,766	-		GFF5340	0.63	+1.1
5,333,777	-		GFF5340	0.65	-0.1
5,333,777	-		GFF5340	0.65	-1.4
5,333,805	+		GFF5340	0.69	-0.2
5,333,810	+		GFF5340	0.70	-1.9
5,333,813	-		GFF5340	0.71	-1.6
5,333,815	+		GFF5340	0.71	-1.8
5,333,815	+		GFF5340	0.71	-0.2
5,333,818	-		GFF5340	0.71	-1.8
5,333,825	+		GFF5340	0.73	+0.3
5,333,827	+		GFF5340	0.73	-1.2
5,333,827	+		GFF5340	0.73	+0.5
5,333,827	+		GFF5340	0.73	-1.1
5,333,827	+		GFF5340	0.73	-0.7
5,333,833	+		GFF5340	0.74	+0.5
5,333,833	+		GFF5340	0.74	+0.0
5,333,838	+		GFF5340	0.75	-1.8
5,333,841	+		GFF5340	0.75	-0.6
5,333,841	+		GFF5340	0.75	+1.1
5,333,841	+		GFF5340	0.75	-1.3
5,333,841	+		GFF5340	0.75	-1.0
5,333,841	-		GFF5340	0.75	-2.1
5,333,843	+		GFF5340	0.75	-0.3
5,333,849	-		GFF5340	0.76	-0.7
5,333,851	+		GFF5340	0.77	+0.0
5,333,851	+		GFF5340	0.77	+0.3
5,333,857	+		GFF5340	0.78	-0.9
5,333,868	+		GFF5340	0.79	-0.4
5,333,869	+		GFF5340	0.79	-0.0
5,333,876	-		GFF5340	0.81	-0.6
5,333,897	+		GFF5340	0.84	-1.3
5,333,897	+		GFF5340	0.84	-1.9
5,333,897	+		GFF5340	0.84	+0.1
5,333,905	-		GFF5340	0.85	-1.2
5,333,913	+		GFF5340	0.86	-0.0
5,333,936	+				-0.9
5,333,936	+				-1.1
5,333,936	+				-1.7
5,333,944	-				-0.4
5,333,944	-				-1.7
5,333,944	-				-0.9
5,333,944	-				-0.0
5,333,949	+				+0.8
5,333,949	+				-1.1
5,333,952	-				-0.2
5,333,952	-				-2.4
5,333,967	+				-1.8
5,333,983	-				+0.2
5,333,991	-				+0.3
5,334,000	-				+0.5
5,334,026	+				-0.9
5,334,033	+				+0.1
5,334,035	-				-1.0
5,334,036	-				-1.0
5,334,038	+				-1.4
5,334,038	+				-0.8
5,334,041	-				-0.2
5,334,059	-				+0.5
5,334,073	+		GFF5341	0.14	-1.9
5,334,083	+		GFF5341	0.20	-0.4
5,334,090	+		GFF5341	0.24	-0.9
5,334,091	-		GFF5341	0.24	-0.2
5,334,095	+		GFF5341	0.27	-1.0
5,334,126	+		GFF5341	0.45	-1.0
5,334,126	+		GFF5341	0.45	-2.4
5,334,134	+		GFF5341	0.50	-1.5
5,334,134	+		GFF5341	0.50	-2.6
5,334,134	+		GFF5341	0.50	-0.4
5,334,134	+		GFF5341	0.50	-0.3
5,334,134	-		GFF5341	0.50	-1.6
5,334,139	+		GFF5341	0.53	-0.3
5,334,142	-		GFF5341	0.55	-1.4
5,334,142	-		GFF5341	0.55	-1.4
5,334,142	-		GFF5341	0.55	-0.9
5,334,142	-		GFF5341	0.55	-0.7
5,334,142	-		GFF5341	0.55	-0.4
5,334,142	-		GFF5341	0.55	-1.7
5,334,154	-		GFF5341	0.62	-0.1
5,334,156	+		GFF5341	0.63	-1.5
5,334,160	+		GFF5341	0.65	-0.0
5,334,161	+		GFF5341	0.66	+0.1
5,334,165	+		GFF5341	0.68	-1.2
5,334,168	-		GFF5341	0.70	-1.1
5,334,168	-		GFF5341	0.70	-0.7
5,334,168	-		GFF5341	0.70	-0.4
5,334,168	-		GFF5341	0.70	-0.8
5,334,173	-		GFF5341	0.73	-0.6
5,334,175	+		GFF5341	0.74	+0.5
5,334,175	+		GFF5341	0.74	-1.7
5,334,175	+		GFF5341	0.74	-0.7
5,334,175	+		GFF5341	0.74	+1.1
5,334,175	+		GFF5341	0.74	-1.5
5,334,175	+		GFF5341	0.74	-0.3
5,334,183	-		GFF5341	0.79	-1.2
5,334,183	-		GFF5341	0.79	-0.4
5,334,183	-		GFF5341	0.79	-1.2
5,334,183	-		GFF5341	0.79	-1.7
5,334,183	-		GFF5341	0.79	-1.8
5,334,202	+				-0.5
5,334,202	-				-0.1
5,334,241	-				-1.0
5,334,281	+		GFF5342	0.36	-0.5
5,334,281	+		GFF5342	0.36	+0.4
5,334,281	+		GFF5342	0.36	-0.7
5,334,286	+		GFF5342	0.40	-1.3
5,334,287	+		GFF5342	0.40	-1.7
5,334,287	+		GFF5342	0.40	-3.3
5,334,287	+		GFF5342	0.40	-1.5
5,334,287	+		GFF5342	0.40	-0.0
5,334,287	+		GFF5342	0.40	-1.0
5,334,287	+		GFF5342	0.40	-1.7
5,334,289	-		GFF5342	0.42	+0.5
5,334,292	+		GFF5342	0.44	-0.3
5,334,292	+		GFF5342	0.44	-0.0
5,334,295	-		GFF5342	0.47	+0.1
5,334,295	-		GFF5342	0.47	-2.1
5,334,295	-		GFF5342	0.47	-0.0
5,334,295	-		GFF5342	0.47	-0.9
5,334,297	+		GFF5342	0.48	-0.9
5,334,297	+		GFF5342	0.48	-1.5
5,334,305	-		GFF5342	0.54	+0.1
5,334,305	-		GFF5342	0.54	+1.6
5,334,305	-		GFF5342	0.54	-0.2
5,334,305	-		GFF5342	0.54	+1.2
5,334,315	-		GFF5342	0.62	-3.2
5,334,334	+		GFF5342	0.77	-0.8
5,334,341	+		GFF5342	0.82	+1.0
5,334,341	+		GFF5342	0.82	-0.8
5,334,341	+		GFF5342	0.82	-0.9
5,334,341	+		GFF5342	0.82	+0.4
5,334,341	+		GFF5342	0.82	-0.4
5,334,341	+		GFF5342	0.82	-0.5
5,334,341	+		GFF5342	0.82	+0.0
5,334,341	+		GFF5342	0.82	+0.6
5,334,349	-		GFF5342	0.88	-0.3
5,334,349	-		GFF5342	0.88	-1.2
5,334,349	-		GFF5342	0.88	-0.3
5,334,349	-		GFF5342	0.88	-2.6
5,334,349	-		GFF5342	0.88	+0.0
5,334,349	-		GFF5342	0.88	+0.1
5,334,349	-		GFF5342	0.88	-1.1
5,334,349	-		GFF5342	0.88	+0.1
5,334,349	-		GFF5342	0.88	-0.8
5,334,349	-		GFF5342	0.88	-1.6
5,334,349	-		GFF5342	0.88	-3.0
5,334,349	-		GFF5342	0.88	-0.5
5,334,349	-		GFF5342	0.88	-2.2
5,334,367	+				-1.8
5,334,367	+				-0.4
5,334,374	+				-2.0
5,334,374	+				-0.3
5,334,374	+				-1.9
5,334,374	+				+0.8
5,334,374	+				-0.7
5,334,374	+				-0.4
5,334,374	+				-0.8
5,334,374	+				-1.1
5,334,374	+				-0.7
5,334,374	+				-0.6
5,334,374	+				+0.5
5,334,374	+				-0.9
5,334,374	+				-1.5
5,334,374	+				-0.4
5,334,374	+				-0.9
5,334,375	+				-0.3
5,334,382	-				-2.3
5,334,382	-				+0.7
5,334,382	-				-1.9
5,334,382	-				-0.3
5,334,382	-				-0.9
5,334,382	-				-0.4
5,334,382	-				-2.3
5,334,382	-				-1.0
5,334,382	-				+0.1
5,334,382	-				+0.6
5,334,382	-				+0.8
5,334,382	-				-0.3
5,334,382	-				+0.5
5,334,393	-				+0.1
5,334,402	+				+0.2
5,334,409	+				-1.6
5,334,409	+				-2.7
5,334,410	-				-0.5
5,334,410	-				-1.1
5,334,411	-				-1.5
5,334,411	-				-0.5
5,334,411	-				-0.5
5,334,426	-				-2.1
5,334,428	-				+0.1
5,334,438	-				-0.4
5,334,440	-				-0.2
5,334,440	-				+0.5
5,334,661	+				+0.4
5,334,806	+				-0.6
5,334,826	+				+0.3
5,334,826	+				-0.9
5,334,826	+				-0.4
5,334,826	+				+0.5
5,334,826	+				-1.9
5,334,826	+				+0.7
5,334,826	+				-0.5
5,334,826	+				-0.5
5,334,845	+				-0.6
5,334,865	-				-0.5
5,334,869	+				-0.0
5,334,869	+				-1.2
5,334,869	+				-1.2
5,334,871	-				-1.7
5,334,874	+		GFF5344	0.10	+0.6
5,334,882	-		GFF5344	0.11	-1.5
5,334,897	+		GFF5344	0.12	-0.0
5,334,897	+		GFF5344	0.12	-0.8
5,334,897	+		GFF5344	0.12	-0.5
5,334,905	-		GFF5344	0.13	+1.3
5,334,905	-		GFF5344	0.13	-1.8
5,334,905	-		GFF5344	0.13	+0.2
5,334,905	-		GFF5344	0.13	+1.5
5,334,905	-		GFF5344	0.13	-0.6
5,334,905	-		GFF5344	0.13	+1.4
5,334,912	+		GFF5344	0.13	-0.2
5,334,912	+		GFF5344	0.13	-1.4
5,334,912	+		GFF5344	0.13	-1.1
5,334,912	+		GFF5344	0.13	+0.5
5,334,920	-		GFF5344	0.14	+0.2
5,334,920	-		GFF5344	0.14	-0.6
5,334,920	-		GFF5344	0.14	+0.0
5,334,920	-		GFF5344	0.14	+1.7
5,334,920	-		GFF5344	0.14	-1.7
5,334,920	-		GFF5344	0.14	+1.1
5,334,920	-		GFF5344	0.14	+0.0
5,334,920	-		GFF5344	0.14	-1.4
5,334,920	-		GFF5344	0.14	-0.5
5,334,920	-		GFF5344	0.14	-1.2
5,334,920	-		GFF5344	0.14	+1.0
5,334,925	-		GFF5344	0.14	+1.8
5,334,941	+		GFF5344	0.16	+0.6
5,334,948	+		GFF5344	0.16	+0.2
5,334,948	+		GFF5344	0.16	+1.5
5,334,948	+		GFF5344	0.16	+0.2
5,334,948	+		GFF5344	0.16	+1.2
5,334,948	+		GFF5344	0.16	-1.2
5,334,949	+		GFF5344	0.16	-0.7
5,334,956	-		GFF5344	0.17	-0.1
5,334,956	-		GFF5344	0.17	-0.5
5,334,956	-		GFF5344	0.17	-1.0
5,334,957	+		GFF5344	0.17	-1.8
5,334,957	+		GFF5344	0.17	+1.0
5,334,965	+		GFF5344	0.18	-2.0
5,334,980	+		GFF5344	0.19	-0.8
5,335,003	+		GFF5344	0.21	+1.2
5,335,010	+		GFF5344	0.21	-0.2
5,335,015	+		GFF5344	0.22	-0.5
5,335,018	-		GFF5344	0.22	+0.9
5,335,031	-		GFF5344	0.23	-0.6
5,335,036	-		GFF5344	0.23	-1.9
5,335,041	+		GFF5344	0.24	-1.4
5,335,096	+		GFF5344	0.28	-0.8
5,335,096	+		GFF5344	0.28	+0.7
5,335,104	-		GFF5344	0.29	+0.5
5,335,104	-		GFF5344	0.29	-0.7
5,335,113	-		GFF5344	0.30	+0.4
5,335,113	-		GFF5344	0.30	-0.4
5,335,113	-		GFF5344	0.30	+1.0
5,335,114	+		GFF5344	0.30	-0.5
5,335,117	+		GFF5344	0.30	-2.0
5,335,117	+		GFF5344	0.30	+1.2
5,335,125	-		GFF5344	0.31	-0.1
5,335,134	+		GFF5344	0.31	+1.1
5,335,134	+		GFF5344	0.31	+0.8
5,335,134	+		GFF5344	0.31	+0.7
5,335,136	+		GFF5344	0.32	-0.4
5,335,142	-		GFF5344	0.32	-0.6
5,335,144	-		GFF5344	0.32	-0.0
5,335,144	-		GFF5344	0.32	+0.1
5,335,149	-		GFF5344	0.33	-1.5
5,335,158	+		GFF5344	0.33	+0.6
5,335,163	+		GFF5344	0.34	+0.1
5,335,163	+		GFF5344	0.34	+1.1
5,335,171	-		GFF5344	0.34	+0.0
5,335,175	+		GFF5344	0.35	-0.3
5,335,175	+		GFF5344	0.35	-0.7
5,335,175	+		GFF5344	0.35	+0.1
5,335,175	+		GFF5344	0.35	-0.4
5,335,175	+		GFF5344	0.35	+1.0
5,335,175	+		GFF5344	0.35	-1.4
5,335,175	+		GFF5344	0.35	+0.2
5,335,175	+		GFF5344	0.35	+1.2
5,335,181	-		GFF5344	0.35	-1.0
5,335,181	-		GFF5344	0.35	-1.1
5,335,183	-		GFF5344	0.35	-0.9
5,335,183	-		GFF5344	0.35	+0.7
5,335,183	-		GFF5344	0.35	-0.5
5,335,183	-		GFF5344	0.35	-0.8
5,335,193	-		GFF5344	0.36	+0.2
5,335,196	+		GFF5344	0.36	+0.1
5,335,196	+		GFF5344	0.36	-1.9
5,335,201	+		GFF5344	0.37	+0.4
5,335,204	+		GFF5344	0.37	-2.0
5,335,204	-		GFF5344	0.37	+0.1
5,335,214	-		GFF5344	0.38	+1.2
5,335,214	-		GFF5344	0.38	-0.6
5,335,222	-		GFF5344	0.39	-0.1
5,335,237	-		GFF5344	0.40	-1.5
5,335,241	+		GFF5344	0.40	+0.9
5,335,249	-		GFF5344	0.41	-2.1
5,335,270	+		GFF5344	0.42	+0.8
5,335,279	+		GFF5344	0.43	-0.6
5,335,287	+		GFF5344	0.44	-0.8
5,335,287	-		GFF5344	0.44	-1.0
5,335,292	+		GFF5344	0.44	-0.4
5,335,295	-		GFF5344	0.45	-0.2
5,335,295	-		GFF5344	0.45	-0.6
5,335,295	-		GFF5344	0.45	+1.3
5,335,300	-		GFF5344	0.45	+0.1
5,335,301	+		GFF5344	0.45	-0.4
5,335,306	+		GFF5344	0.45	+0.7
5,335,306	+		GFF5344	0.45	-0.2
5,335,306	+		GFF5344	0.45	+0.1
5,335,306	+		GFF5344	0.45	-0.8
5,335,306	+		GFF5344	0.45	-0.3
5,335,306	+		GFF5344	0.45	-1.3
5,335,311	+		GFF5344	0.46	+0.8
5,335,311	+		GFF5344	0.46	-0.3
5,335,314	-		GFF5344	0.46	+1.2
5,335,314	-		GFF5344	0.46	-2.1
5,335,314	-		GFF5344	0.46	-0.1
5,335,319	-		GFF5344	0.46	+0.5
5,335,333	+		GFF5344	0.48	-0.4
5,335,333	+		GFF5344	0.48	+0.1
5,335,333	+		GFF5344	0.48	+0.2
5,335,333	+		GFF5344	0.48	+0.7
5,335,333	+		GFF5344	0.48	-1.5
5,335,333	+		GFF5344	0.48	-1.8
5,335,333	+		GFF5344	0.48	-0.3
5,335,333	+		GFF5344	0.48	+0.4
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5,335,341	-		GFF5344	0.48	-0.9
5,335,341	-		GFF5344	0.48	+1.1
5,335,341	-		GFF5344	0.48	-0.3
5,335,341	-		GFF5344	0.48	+0.3
5,335,341	-		GFF5344	0.48	+0.3
5,335,341	-		GFF5344	0.48	-0.4
5,335,341	-		GFF5344	0.48	-1.3
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5,335,375	-		GFF5344	0.51	-0.8
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5,335,375	-		GFF5344	0.51	-0.7
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5,335,395	-		GFF5344	0.53	-3.2
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5,335,430	-		GFF5344	0.56	-1.7
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5,335,503	+		GFF5344	0.62	-0.3
5,335,503	+		GFF5344	0.62	-1.3
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5,335,511	-		GFF5344	0.62	+0.4
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5,335,511	-		GFF5344	0.62	+0.7
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5,335,511	-		GFF5344	0.62	+1.5
5,335,511	-		GFF5344	0.62	-1.7
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5,335,511	-		GFF5344	0.62	-0.3
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5,335,511	-		GFF5344	0.62	-0.5
5,335,511	-		GFF5344	0.62	+1.0
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5,335,511	-		GFF5344	0.62	+1.4
5,335,511	-		GFF5344	0.62	-1.7
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5,335,654	+		GFF5344	0.74	-1.9
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5,335,654	+		GFF5344	0.74	-0.7
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5,335,662	-		GFF5344	0.75	-1.6
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