Strain Fitness in Sphingobium sp. HT1-2 around GFF5328

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,320,126	-		GFF5327	0.59	+1.0
5,320,126	-		GFF5327	0.59	-1.8
5,320,131	-		GFF5327	0.59	-0.8
5,320,155	-		GFF5327	0.61	-0.4
5,320,158	+		GFF5327	0.62	-2.1
5,320,187	+		GFF5327	0.65	+1.4
5,320,192	+		GFF5327	0.65	+0.7
5,320,195	+		GFF5327	0.65	+1.2
5,320,200	+		GFF5327	0.66	-0.1
5,320,200	+		GFF5327	0.66	-0.7
5,320,219	-		GFF5327	0.68	+1.8
5,320,220	+		GFF5327	0.68	-0.8
5,320,229	+		GFF5327	0.69	+0.1
5,320,229	+		GFF5327	0.69	+1.4
5,320,237	-		GFF5327	0.70	-1.7
5,320,237	-		GFF5327	0.70	-0.8
5,320,239	+		GFF5327	0.70	-0.6
5,320,239	+		GFF5327	0.70	-1.0
5,320,239	+		GFF5327	0.70	-2.4
5,320,239	+		GFF5327	0.70	+0.5
5,320,239	+		GFF5327	0.70	+0.4
5,320,239	+		GFF5327	0.70	+0.4
5,320,239	+		GFF5327	0.70	+0.0
5,320,239	+		GFF5327	0.70	-1.0
5,320,239	+		GFF5327	0.70	-0.9
5,320,239	+		GFF5327	0.70	-0.6
5,320,244	+		GFF5327	0.70	-1.2
5,320,247	-		GFF5327	0.71	-1.2
5,320,247	-		GFF5327	0.71	-0.0
5,320,247	-		GFF5327	0.71	-0.5
5,320,247	-		GFF5327	0.71	-1.0
5,320,247	-		GFF5327	0.71	+0.1
5,320,247	-		GFF5327	0.71	-0.3
5,320,247	-		GFF5327	0.71	-2.2
5,320,249	+		GFF5327	0.71	-0.5
5,320,249	+		GFF5327	0.71	-0.3
5,320,249	+		GFF5327	0.71	+0.3
5,320,249	+		GFF5327	0.71	-0.2
5,320,249	+		GFF5327	0.71	-0.4
5,320,249	+		GFF5327	0.71	-0.6
5,320,249	+		GFF5327	0.71	+0.0
5,320,249	+		GFF5327	0.71	-1.0
5,320,249	+		GFF5327	0.71	-0.6
5,320,249	+		GFF5327	0.71	-0.2
5,320,249	+		GFF5327	0.71	-0.8
5,320,249	+		GFF5327	0.71	-0.5
5,320,254	+		GFF5327	0.71	+0.4
5,320,256	+		GFF5327	0.71	-0.3
5,320,256	+		GFF5327	0.71	-0.7
5,320,256	+		GFF5327	0.71	+0.7
5,320,257	-		GFF5327	0.71	-0.2
5,320,257	-		GFF5327	0.71	+0.6
5,320,257	-		GFF5327	0.71	+0.1
5,320,257	-		GFF5327	0.71	-1.3
5,320,257	-		GFF5327	0.71	+0.4
5,320,257	-		GFF5327	0.71	-2.3
5,320,257	-		GFF5327	0.71	-0.9
5,320,257	-		GFF5327	0.71	-1.6
5,320,257	-		GFF5327	0.71	-0.3
5,320,257	-		GFF5327	0.71	-1.8
5,320,261	+		GFF5327	0.72	+0.7
5,320,264	+		GFF5327	0.72	-0.1
5,320,264	-		GFF5327	0.72	+0.3
5,320,264	-		GFF5327	0.72	-1.0
5,320,267	-		GFF5327	0.72	+0.6
5,320,269	-		GFF5327	0.73	-1.4
5,320,269	-		GFF5327	0.73	-0.2
5,320,274	-		GFF5327	0.73	-0.4
5,320,293	-		GFF5327	0.75	-0.3
5,320,293	-		GFF5327	0.75	-0.6
5,320,303	+		GFF5327	0.76	+1.1
5,320,307	-		GFF5327	0.76	+0.9
5,320,318	+		GFF5327	0.78	-2.5
5,320,318	+		GFF5327	0.78	+0.4
5,320,318	+		GFF5327	0.78	-1.5
5,320,326	+		GFF5327	0.78	-0.3
5,320,326	-		GFF5327	0.78	-0.3
5,320,326	-		GFF5327	0.78	-1.2
5,320,326	-		GFF5327	0.78	+1.1
5,320,328	-		GFF5327	0.79	-1.0
5,320,348	+		GFF5327	0.80	-0.1
5,320,348	+		GFF5327	0.80	-0.3
5,320,356	-		GFF5327	0.81	-0.8
5,320,356	-		GFF5327	0.81	-0.4
5,320,357	+		GFF5327	0.81	+0.5
5,320,375	+		GFF5327	0.83	-1.1
5,320,375	+		GFF5327	0.83	+0.4
5,320,375	+		GFF5327	0.83	-0.4
5,320,375	+		GFF5327	0.83	-0.8
5,320,375	+		GFF5327	0.83	-0.1
5,320,383	-		GFF5327	0.84	-0.0
5,320,383	-		GFF5327	0.84	+0.2
5,320,383	-		GFF5327	0.84	-1.0
5,320,390	-		GFF5327	0.85	-2.6
5,320,408	-		GFF5327	0.86	-1.4
5,320,425	-		GFF5327	0.88	-1.4
5,320,425	-		GFF5327	0.88	-1.2
5,320,425	-		GFF5327	0.88	-1.0
5,320,427	-		GFF5327	0.88	-1.0
5,320,433	+		GFF5327	0.89	-1.6
5,320,433	+		GFF5327	0.89	+0.3
5,320,433	+		GFF5327	0.89	+1.0
5,320,433	+		GFF5327	0.89	-0.9
5,320,433	+		GFF5327	0.89	+0.6
5,320,433	+		GFF5327	0.89	+0.1
5,320,433	+		GFF5327	0.89	-2.4
5,320,433	+		GFF5327	0.89	-0.5
5,320,433	+		GFF5327	0.89	-0.7
5,320,433	+		GFF5327	0.89	-0.6
5,320,438	+		GFF5327	0.89	+0.1
5,320,440	-		GFF5327	0.90	-1.8
5,320,441	-		GFF5327	0.90	-1.6
5,320,441	-		GFF5327	0.90	-2.6
5,320,441	-		GFF5327	0.90	+0.0
5,320,441	-		GFF5327	0.90	-1.1
5,320,441	-		GFF5327	0.90	-0.8
5,320,441	-		GFF5327	0.90	+0.7
5,320,441	-		GFF5327	0.90	-1.1
5,320,441	-		GFF5327	0.90	-0.1
5,320,441	-		GFF5327	0.90	+0.1
5,320,441	-		GFF5327	0.90	+0.4
5,320,441	-		GFF5327	0.90	+0.4
5,320,441	-		GFF5327	0.90	-0.7
5,320,456	+				-1.6
5,320,456	+				-1.9
5,320,464	-				+2.1
5,320,492	+				-0.6
5,320,500	-				-1.9
5,320,500	-				-0.5
5,320,518	-				+0.1
5,320,573	+				-0.2
5,320,573	+				-0.8
5,320,573	+				-0.3
5,320,573	+				+0.3
5,320,573	+				+1.0
5,320,573	+				+0.4
5,320,573	+				-0.9
5,320,573	+				-1.7
5,320,580	-				+1.1
5,320,581	-				-1.4
5,320,581	-				+0.6
5,320,581	-				-1.8
5,320,587	+				+0.7
5,320,595	-				-1.2
5,320,630	-				-0.5
5,320,636	-				-0.8
5,320,647	+				+0.4
5,320,655	+				-0.0
5,320,655	+				-0.5
5,320,655	+				-1.2
5,320,657	+				-1.1
5,320,693	+				-1.6
5,320,718	+				+0.0
5,320,763	+				+0.3
5,320,763	+				+0.5
5,320,770	-				-0.8
5,320,771	-				-1.5
5,320,771	-				-0.6
5,320,771	-				-0.5
5,320,773	+				-1.2
5,320,781	-				-2.5
5,320,781	-				+0.6
5,320,781	-				+0.6
5,320,824	+				-0.0
5,320,829	+				+0.3
5,320,829	+				-1.7
5,320,831	-				-0.9
5,320,844	-				+0.2
5,320,855	+				-1.2
5,320,855	+				+0.1
5,320,863	-				-0.1
5,320,893	+				-0.5
5,320,893	+				-0.9
5,320,893	+				-0.7
5,320,893	+				-1.5
5,320,893	+				-0.9
5,320,893	+				-0.9
5,320,893	+				+1.0
5,320,893	+				+0.4
5,320,893	+				-0.0
5,320,893	+				+0.5
5,320,893	+				+0.4
5,320,893	+				-0.4
5,320,893	+				-0.7
5,320,893	+				+0.4
5,320,893	+				-1.1
5,320,893	+				+0.0
5,320,893	+				-0.6
5,320,893	+				-0.5
5,320,893	+				-1.7
5,320,893	+				-1.5
5,320,893	+				+0.1
5,320,893	+				-0.7
5,320,893	+				-0.8
5,320,894	+				-1.7
5,320,901	-				-1.0
5,320,901	-				-1.6
5,320,901	-				-0.3
5,320,901	-				-2.2
5,320,901	-				-1.0
5,320,901	-				-0.5
5,320,901	-				+0.0
5,320,901	-				-1.3
5,320,901	-				-0.8
5,320,901	-				-0.3
5,320,901	-				+0.5
5,320,901	-				-1.6
5,320,901	-				-0.8
5,320,901	-				-1.6
5,320,901	-				-1.5
5,320,901	-				-0.4
5,320,901	-				+0.8
5,320,901	-				-2.1
5,320,901	-				-0.7
5,320,901	-				-1.5
5,320,901	-				-0.8
5,320,973	+				-0.5
5,320,973	+				-0.6
5,320,981	-				-0.0
5,320,990	+				+1.2
5,320,991	-				+0.5
5,320,998	-				-0.8
5,321,016	+				-0.1
5,321,016	+				-1.2
5,321,016	+				+0.0
5,321,016	+				+0.1
5,321,016	+				-1.6
5,321,016	+				+0.9
5,321,016	+				-0.8
5,321,019	-				-3.1
5,321,024	-				+0.4
5,321,024	-				-0.8
5,321,024	-				-0.6
5,321,024	-				-1.6
5,321,024	-				-0.3
5,321,024	-				+0.7
5,321,024	-				+0.4
5,321,024	-				+0.5
5,321,024	-				+1.1
5,321,043	+				+0.0
5,321,043	+				-0.8
5,321,043	+				-0.1
5,321,051	-				+0.2
5,321,051	-				+1.3
5,321,056	+				+0.6
5,321,057	-				+0.1
5,321,061	+				+0.8
5,321,069	-				-0.6
5,321,074	+				+0.9
5,321,085	+				-0.4
5,321,093	-				+0.3
5,321,094	-				-0.8
5,321,300	+		GFF5328	0.71	-0.0
5,321,318	-		GFF5328	0.78	-0.1
5,321,333	-		GFF5328	0.84	+0.1
5,321,347	-				-1.3
5,321,357	-				-0.0
5,321,361	+				-0.2
5,321,369	-				-1.0
5,321,372	+				-0.2
5,321,378	+				-0.7
5,321,379	-				-0.3
5,321,393	+				-0.9
5,321,394	+				-1.4
5,321,402	-				-0.9
5,321,408	+				+0.3
5,321,408	+				+0.6
5,321,413	+				-0.1
5,321,413	+				+0.6
5,321,416	-				-1.6
5,321,416	-				-1.3
5,321,416	-				-2.3
5,321,421	+				+0.6
5,321,421	+				-0.3
5,321,421	-				-0.5
5,321,426	+				-1.1
5,321,429	-				-0.7
5,321,429	-				-2.1
5,321,431	+				-1.0
5,321,439	-				-1.9
5,321,444	+				-1.2
5,321,476	-				+0.5
5,321,478	-				-1.2
5,321,479	+				-1.0
5,321,480	+				+0.7
5,321,481	+				-0.7
5,321,481	+				-1.3
5,321,481	+				-1.1
5,321,486	+				-0.4
5,321,486	+				-0.5
5,321,487	-				-0.7
5,321,491	+				-0.8
5,321,491	+				+0.2
5,321,492	+				-0.7
5,321,492	+				+0.5
5,321,492	+				-0.8
5,321,492	+				-0.3
5,321,492	+				+0.5
5,321,492	+				-0.4
5,321,492	+				-1.0
5,321,492	+				-0.5
5,321,492	+				+0.5
5,321,492	+				-2.9
5,321,492	+				-1.7
5,321,492	+				-1.3
5,321,492	+				-0.0
5,321,492	+				+1.1
5,321,492	+				-1.8
5,321,492	+				-0.5
5,321,492	+				-1.3
5,321,492	+				+0.3
5,321,492	+				-0.5
5,321,492	+				-1.2
5,321,492	+				-0.5
5,321,492	+				-0.3
5,321,492	+				+0.1
5,321,492	+				+1.0
5,321,492	+				-1.9
5,321,494	-				+1.0
5,321,494	-				-1.7
5,321,499	-				+1.0
5,321,500	-				+0.8
5,321,500	-				-0.8
5,321,500	-				+0.6
5,321,500	-				-1.0
5,321,500	-				+0.4
5,321,500	-				+0.4
5,321,500	-				-0.8
5,321,500	-				-3.3
5,321,500	-				+0.3
5,321,500	-				-0.9
5,321,500	-				-0.3
5,321,500	-				+0.5
5,321,500	-				-0.0
5,321,500	-				-0.8
5,321,500	-				-0.1
5,321,500	-				-0.7
5,321,500	-				-0.4
5,321,500	-				+0.8
5,321,500	-				-0.7
5,321,500	-				-1.5
5,321,500	-				-0.3
5,321,500	-				-0.5
5,321,500	-				-1.3
5,321,504	+				+0.6
5,321,530	-				-0.9
5,321,540	-				+1.4
5,321,545	-				-1.9
5,321,546	+				+0.2
5,321,546	+				+0.8
5,321,546	+				-0.5
5,321,546	+				+0.3
5,321,546	+				-2.0
5,321,546	+				-0.4
5,321,546	+				-1.4
5,321,546	+				+0.7
5,321,546	+				-1.7
5,321,548	+				-3.2
5,321,551	+				-0.7
5,321,552	+				-0.0
5,321,554	-				-0.5
5,321,554	-				-2.4
5,321,554	-				-0.4
5,321,554	-				-0.0
5,321,554	-				-0.2
5,321,554	-				+0.8
5,321,554	-				+0.8
5,321,554	-				+1.8
5,321,556	-				-2.4
5,321,556	-				-0.2
5,321,556	-				+0.3
5,321,556	-				-1.2
5,321,584	+				+0.6
5,321,584	+				+0.1
5,321,594	+				-0.9
5,321,594	+				-0.9
5,321,597	-				-0.7
5,321,597	-				-1.7
5,321,599	+				-1.5
5,321,599	+				+1.3
5,321,599	+				-1.6
5,321,599	+				+1.0
5,321,599	+				-0.5
5,321,599	+				+0.2
5,321,607	-				+0.4
5,321,609	+				-0.9
5,321,609	+				+0.7
5,321,617	-				-2.4
5,321,617	-				-1.7
5,321,623	+				+1.0
5,321,628	-				-0.8
5,321,630	+				+0.3
5,321,641	-				+0.8
5,321,646	+				+0.1
5,321,653	-				+0.8
5,321,654	-				+0.4
5,321,654	-				-2.0
5,321,656	+				-0.4
5,321,656	+				-0.4
5,321,667	-				+0.5
5,321,681	+		GFF5329	0.11	-0.7
5,321,688	+		GFF5329	0.11	-0.5
5,321,688	+		GFF5329	0.11	-0.7
5,321,713	+		GFF5329	0.14	-1.5
5,321,719	+		GFF5329	0.15	-0.6
5,321,722	-		GFF5329	0.15	-0.3
5,321,733	+		GFF5329	0.17	+0.2
5,321,733	+		GFF5329	0.17	-1.3
5,321,747	+		GFF5329	0.18	+0.2
5,321,747	+		GFF5329	0.18	-1.4
5,321,755	-		GFF5329	0.19	-0.4
5,321,755	-		GFF5329	0.19	-2.5
5,321,755	-		GFF5329	0.19	-2.0
5,321,755	-		GFF5329	0.19	-1.2
5,321,781	-		GFF5329	0.22	-1.5
5,321,790	-		GFF5329	0.23	-0.6
5,321,792	-		GFF5329	0.23	-0.4
5,321,797	+		GFF5329	0.24	-1.1
5,321,797	+		GFF5329	0.24	-1.9
5,321,805	-		GFF5329	0.25	+1.3
5,321,805	-		GFF5329	0.25	-2.1
5,321,807	-		GFF5329	0.25	+0.0
5,321,818	-		GFF5329	0.26	-0.3
5,321,819	-		GFF5329	0.27	-0.0
5,321,838	+		GFF5329	0.29	+0.3
5,321,839	+		GFF5329	0.29	+0.2
5,321,846	+		GFF5329	0.30	-0.4
5,321,846	+		GFF5329	0.30	-0.7
5,321,846	-		GFF5329	0.30	-0.4
5,321,858	+		GFF5329	0.31	+0.1
5,321,858	-		GFF5329	0.31	+0.0
5,321,864	-		GFF5329	0.32	-0.2
5,321,865	-		GFF5329	0.32	-0.6
5,321,865	-		GFF5329	0.32	-0.1
5,321,865	-		GFF5329	0.32	+0.1
5,321,865	-		GFF5329	0.32	-1.3
5,321,919	-		GFF5329	0.38	+0.1
5,321,923	+		GFF5329	0.39	-0.1
5,321,943	+		GFF5329	0.41	+0.8
5,321,945	+		GFF5329	0.41	-0.3
5,321,951	-		GFF5329	0.42	-2.3
5,321,951	-		GFF5329	0.42	+0.2
5,321,955	+		GFF5329	0.42	-1.0
5,321,962	+		GFF5329	0.43	+0.7
5,321,962	+		GFF5329	0.43	-1.5
5,321,962	+		GFF5329	0.43	-1.0
5,321,968	+		GFF5329	0.44	+0.7
5,321,970	-		GFF5329	0.44	-0.9
5,321,970	-		GFF5329	0.44	+0.8
5,321,994	-		GFF5329	0.47	+0.2
5,321,994	-		GFF5329	0.47	-2.3
5,322,007	-		GFF5329	0.48	-1.5
5,322,010	+		GFF5329	0.49	-0.0
5,322,013	+		GFF5329	0.49	+0.7
5,322,013	+		GFF5329	0.49	-0.7
5,322,013	+		GFF5329	0.49	+0.6
5,322,031	+		GFF5329	0.51	-0.6
5,322,093	+		GFF5329	0.58	-0.7
5,322,152	+		GFF5329	0.65	+1.0
5,322,160	-		GFF5329	0.66	-1.5
5,322,160	-		GFF5329	0.66	-0.4
5,322,233	+		GFF5329	0.74	-0.1
5,322,241	-		GFF5329	0.75	-0.7
5,322,241	-		GFF5329	0.75	+0.9
5,322,251	-		GFF5329	0.77	-2.0
5,322,259	-		GFF5329	0.77	-1.2
5,322,275	-		GFF5329	0.79	+0.7
5,322,277	-		GFF5329	0.80	+0.4
5,322,312	-		GFF5329	0.84	+0.4
5,322,317	+		GFF5329	0.84	-0.4
5,322,317	+		GFF5329	0.84	-1.6
5,322,325	-		GFF5329	0.85	+0.4
5,322,356	+		GFF5329	0.89	-0.1
5,322,366	+		GFF5329	0.90	-1.7