Strain Fitness in Sphingobium sp. HT1-2 around GFF528

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF527 and GFF528 are separated by 111 nucleotidesGFF528 and GFF529 are separated by 5 nucleotidesGFF529 and GFF530 are separated by 38 nucleotides GFF527 - Aromatic hydrocarbon utilization transcriptional regulator CatR (LysR family), at 524,843 to 525,766 GFF527 GFF528 - Muconate cycloisomerase (EC 5.5.1.1), at 525,878 to 527,035 GFF528 GFF529 - Muconolactone isomerase (EC 5.3.3.4), at 527,041 to 527,331 GFF529 GFF530 - Catechol 1,2-dioxygenase (EC 1.13.11.1), at 527,370 to 528,296 GFF530 Position (kb) 525 526 527 528Strain fitness (log2 ratio) -2 -1 0 1 2at 524.880 kb on - strandat 524.880 kb on - strandat 524.880 kb on - strandat 524.880 kb on - strandat 524.880 kb on - strandat 524.912 kb on - strandat 524.928 kb on - strandat 524.953 kb on + strand, within GFF527at 524.955 kb on - strand, within GFF527at 524.979 kb on + strand, within GFF527at 524.989 kb on + strand, within GFF527at 524.998 kb on + strand, within GFF527at 524.998 kb on + strand, within GFF527at 525.012 kb on - strand, within GFF527at 525.025 kb on + strand, within GFF527at 525.078 kb on - strand, within GFF527at 525.088 kb on - strand, within GFF527at 525.105 kb on - strand, within GFF527at 525.112 kb on - strand, within GFF527at 525.115 kb on + strand, within GFF527at 525.141 kb on + strand, within GFF527at 525.149 kb on - strand, within GFF527at 525.149 kb on - strand, within GFF527at 525.149 kb on - strand, within GFF527at 525.162 kb on - strand, within GFF527at 525.196 kb on - strand, within GFF527at 525.272 kb on + strand, within GFF527at 525.272 kb on - strand, within GFF527at 525.289 kb on + strand, within GFF527at 525.289 kb on + strand, within GFF527at 525.289 kb on + strand, within GFF527at 525.289 kb on + strand, within GFF527at 525.302 kb on + strand, within GFF527at 525.330 kb on - strand, within GFF527at 525.371 kb on - strand, within GFF527at 525.373 kb on + strand, within GFF527at 525.373 kb on + strand, within GFF527at 525.373 kb on + strand, within GFF527at 525.373 kb on + strand, within GFF527at 525.373 kb on + strand, within GFF527at 525.373 kb on + strand, within GFF527at 525.373 kb on + strand, within GFF527at 525.373 kb on + strand, within GFF527at 525.376 kb on - strand, within GFF527at 525.379 kb on + strand, within GFF527at 525.381 kb on - strand, within GFF527at 525.381 kb on - strand, within GFF527at 525.381 kb on - strand, within GFF527at 525.381 kb on - strand, within GFF527at 525.381 kb on - strand, within GFF527at 525.381 kb on - strand, within GFF527at 525.393 kb on + strand, within GFF527at 525.393 kb on + strand, within GFF527at 525.401 kb on - strand, within GFF527at 525.401 kb on - strand, within GFF527at 525.401 kb on - strand, within GFF527at 525.488 kb on - strand, within GFF527at 525.537 kb on + strand, within GFF527at 525.631 kb on - strand, within GFF527at 525.668 kb on + strand, within GFF527at 525.668 kb on + strand, within GFF527at 525.668 kb on + strand, within GFF527at 525.668 kb on + strand, within GFF527at 525.668 kb on + strand, within GFF527at 525.668 kb on + strand, within GFF527at 525.668 kb on + strand, within GFF527at 525.668 kb on + strand, within GFF527at 525.676 kb on - strandat 525.676 kb on - strandat 525.676 kb on - strandat 525.676 kb on - strandat 525.676 kb on - strandat 525.676 kb on - strandat 525.676 kb on - strandat 525.690 kb on - strandat 525.736 kb on + strandat 525.779 kb on - strandat 525.795 kb on - strandat 525.831 kb on + strandat 525.951 kb on - strandat 525.964 kb on - strandat 525.969 kb on - strandat 525.982 kb on - strandat 526.004 kb on + strand, within GFF528at 526.010 kb on - strand, within GFF528at 526.010 kb on - strand, within GFF528at 526.010 kb on - strand, within GFF528at 526.012 kb on - strand, within GFF528at 526.038 kb on - strand, within GFF528at 526.045 kb on - strand, within GFF528at 526.046 kb on - strand, within GFF528at 526.047 kb on - strand, within GFF528at 526.067 kb on - strand, within GFF528at 526.097 kb on - strand, within GFF528at 526.121 kb on - strand, within GFF528at 526.132 kb on - strand, within GFF528at 526.144 kb on + strand, within GFF528at 526.144 kb on + strand, within GFF528at 526.202 kb on + strand, within GFF528at 526.226 kb on + strand, within GFF528at 526.252 kb on + strand, within GFF528at 526.260 kb on - strand, within GFF528at 526.260 kb on - strand, within GFF528at 526.270 kb on + strand, within GFF528at 526.270 kb on - strand, within GFF528at 526.300 kb on + strand, within GFF528at 526.308 kb on - strand, within GFF528at 526.314 kb on - strand, within GFF528at 526.314 kb on - strand, within GFF528at 526.314 kb on - strand, within GFF528at 526.318 kb on + strand, within GFF528at 526.323 kb on + strand, within GFF528at 526.342 kb on - strand, within GFF528at 526.405 kb on - strand, within GFF528at 526.405 kb on - strand, within GFF528at 526.406 kb on + strand, within GFF528at 526.437 kb on - strand, within GFF528at 526.472 kb on + strand, within GFF528at 526.472 kb on + strand, within GFF528at 526.472 kb on + strand, within GFF528at 526.482 kb on + strand, within GFF528at 526.495 kb on + strand, within GFF528at 526.501 kb on + strand, within GFF528at 526.517 kb on - strand, within GFF528at 526.519 kb on + strand, within GFF528at 526.538 kb on - strand, within GFF528at 526.602 kb on - strand, within GFF528at 526.642 kb on - strand, within GFF528at 526.652 kb on - strand, within GFF528at 526.659 kb on + strand, within GFF528at 526.667 kb on - strand, within GFF528at 526.688 kb on + strand, within GFF528at 526.722 kb on - strand, within GFF528at 526.831 kb on + strand, within GFF528at 526.878 kb on - strand, within GFF528at 526.904 kb on - strand, within GFF528at 526.938 kb on + strandat 526.938 kb on + strandat 526.938 kb on + strandat 526.938 kb on + strandat 526.943 kb on + strandat 526.943 kb on + strandat 526.946 kb on - strandat 526.946 kb on - strandat 526.946 kb on - strandat 526.946 kb on - strandat 526.951 kb on - strandat 526.951 kb on - strandat 526.951 kb on - strandat 526.956 kb on + strandat 526.963 kb on - strandat 526.964 kb on - strandat 526.964 kb on - strandat 526.964 kb on - strandat 526.966 kb on + strandat 526.974 kb on - strandat 527.032 kb on - strandat 527.036 kb on + strandat 527.044 kb on - strandat 527.044 kb on - strandat 527.106 kb on + strand, within GFF529at 527.114 kb on - strand, within GFF529at 527.114 kb on - strand, within GFF529at 527.171 kb on + strand, within GFF529at 527.197 kb on + strand, within GFF529at 527.217 kb on + strand, within GFF529at 527.217 kb on + strand, within GFF529at 527.217 kb on + strand, within GFF529at 527.225 kb on - strand, within GFF529at 527.230 kb on - strand, within GFF529at 527.263 kb on + strand, within GFF529at 527.294 kb on + strand, within GFF529at 527.300 kb on - strand, within GFF529at 527.328 kb on - strandat 527.334 kb on + strandat 527.353 kb on + strandat 527.361 kb on - strandat 527.361 kb on - strandat 527.377 kb on - strandat 527.409 kb on + strandat 527.409 kb on + strandat 527.427 kb on + strandat 527.464 kb on - strand, within GFF530at 527.481 kb on + strand, within GFF530at 527.488 kb on - strand, within GFF530at 527.489 kb on - strand, within GFF530at 527.517 kb on - strand, within GFF530at 527.526 kb on + strand, within GFF530at 527.531 kb on + strand, within GFF530at 527.534 kb on + strand, within GFF530at 527.534 kb on - strand, within GFF530at 527.540 kb on - strand, within GFF530at 527.578 kb on + strand, within GFF530at 527.578 kb on + strand, within GFF530at 527.586 kb on - strand, within GFF530at 527.601 kb on - strand, within GFF530at 527.613 kb on - strand, within GFF530at 527.627 kb on + strand, within GFF530at 527.635 kb on - strand, within GFF530at 527.693 kb on + strand, within GFF530at 527.693 kb on + strand, within GFF530at 527.701 kb on - strand, within GFF530at 527.723 kb on + strand, within GFF530at 527.766 kb on + strand, within GFF530at 527.766 kb on + strand, within GFF530at 527.768 kb on + strand, within GFF530at 527.768 kb on + strand, within GFF530at 527.768 kb on + strand, within GFF530at 527.768 kb on + strand, within GFF530at 527.776 kb on - strand, within GFF530at 527.776 kb on - strand, within GFF530at 527.776 kb on - strand, within GFF530at 527.776 kb on - strand, within GFF530at 527.817 kb on + strand, within GFF530at 527.825 kb on - strand, within GFF530at 527.830 kb on - strand, within GFF530at 527.831 kb on - strand, within GFF530at 527.859 kb on - strand, within GFF530at 527.877 kb on + strand, within GFF530at 527.883 kb on - strand, within GFF530at 527.883 kb on - strand, within GFF530at 527.930 kb on + strand, within GFF530at 527.932 kb on + strand, within GFF530at 527.938 kb on - strand, within GFF530at 527.944 kb on + strand, within GFF530at 527.945 kb on - strand, within GFF530at 527.965 kb on + strand, within GFF530at 527.978 kb on - strand, within GFF530at 528.007 kb on - strand, within GFF530at 528.007 kb on - strand, within GFF530

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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524,880 - -0.8
524,880 - -0.3
524,880 - -0.7
524,880 - -1.2
524,880 - -0.1
524,912 - +0.7
524,928 - -0.5
524,953 + GFF527 0.12 +0.4
524,955 - GFF527 0.12 +0.4
524,979 + GFF527 0.15 -1.4
524,989 + GFF527 0.16 +0.5
524,998 + GFF527 0.17 +0.1
524,998 + GFF527 0.17 -2.3
525,012 - GFF527 0.18 +1.0
525,025 + GFF527 0.20 -1.4
525,078 - GFF527 0.25 -0.5
525,088 - GFF527 0.27 -2.1
525,105 - GFF527 0.28 +0.4
525,112 - GFF527 0.29 -1.8
525,115 + GFF527 0.29 +0.5
525,141 + GFF527 0.32 +1.1
525,149 - GFF527 0.33 -1.7
525,149 - GFF527 0.33 -0.5
525,149 - GFF527 0.33 -1.2
525,162 - GFF527 0.35 +0.7
525,196 - GFF527 0.38 +0.3
525,272 + GFF527 0.46 -1.3
525,272 - GFF527 0.46 -0.5
525,289 + GFF527 0.48 -1.2
525,289 + GFF527 0.48 -0.8
525,289 + GFF527 0.48 +0.0
525,289 + GFF527 0.48 +1.7
525,302 + GFF527 0.50 +0.3
525,330 - GFF527 0.53 +1.2
525,371 - GFF527 0.57 -0.2
525,373 + GFF527 0.57 +0.2
525,373 + GFF527 0.57 -0.0
525,373 + GFF527 0.57 +0.2
525,373 + GFF527 0.57 -0.5
525,373 + GFF527 0.57 -1.3
525,373 + GFF527 0.57 +0.2
525,373 + GFF527 0.57 -0.3
525,373 + GFF527 0.57 +0.3
525,376 - GFF527 0.58 -0.5
525,379 + GFF527 0.58 -0.7
525,381 - GFF527 0.58 +0.7
525,381 - GFF527 0.58 -1.0
525,381 - GFF527 0.58 -1.0
525,381 - GFF527 0.58 -0.0
525,381 - GFF527 0.58 +0.5
525,381 - GFF527 0.58 -0.4
525,393 + GFF527 0.60 +1.0
525,393 + GFF527 0.60 +0.9
525,401 - GFF527 0.60 +1.1
525,401 - GFF527 0.60 -1.2
525,401 - GFF527 0.60 -0.5
525,488 - GFF527 0.70 -1.9
525,537 + GFF527 0.75 +0.4
525,631 - GFF527 0.85 -1.2
525,668 + GFF527 0.89 -0.9
525,668 + GFF527 0.89 -0.7
525,668 + GFF527 0.89 -0.2
525,668 + GFF527 0.89 +0.3
525,668 + GFF527 0.89 +1.1
525,668 + GFF527 0.89 -0.6
525,668 + GFF527 0.89 +1.1
525,668 + GFF527 0.89 +0.2
525,676 - -0.5
525,676 - +0.3
525,676 - -0.3
525,676 - +0.2
525,676 - -1.1
525,676 - +0.4
525,676 - +0.6
525,690 - -0.2
525,736 + +0.5
525,779 - -0.1
525,795 - -1.3
525,831 + -0.3
525,951 - +1.4
525,964 - -0.0
525,969 - -0.6
525,982 - +0.7
526,004 + GFF528 0.11 -0.0
526,010 - GFF528 0.11 +0.5
526,010 - GFF528 0.11 +0.4
526,010 - GFF528 0.11 +0.2
526,012 - GFF528 0.12 -0.5
526,038 - GFF528 0.14 -0.6
526,045 - GFF528 0.14 -1.0
526,046 - GFF528 0.15 +0.8
526,047 - GFF528 0.15 -2.0
526,067 - GFF528 0.16 -0.6
526,097 - GFF528 0.19 -0.0
526,121 - GFF528 0.21 -0.9
526,132 - GFF528 0.22 +1.6
526,144 + GFF528 0.23 -0.3
526,144 + GFF528 0.23 -0.7
526,202 + GFF528 0.28 -0.2
526,226 + GFF528 0.30 +0.1
526,252 + GFF528 0.32 +0.7
526,260 - GFF528 0.33 +0.6
526,260 - GFF528 0.33 -1.0
526,270 + GFF528 0.34 +0.2
526,270 - GFF528 0.34 -0.7
526,300 + GFF528 0.36 -0.3
526,308 - GFF528 0.37 +0.6
526,314 - GFF528 0.38 +0.5
526,314 - GFF528 0.38 +1.1
526,314 - GFF528 0.38 -0.0
526,318 + GFF528 0.38 +1.0
526,323 + GFF528 0.38 -1.1
526,342 - GFF528 0.40 +0.5
526,405 - GFF528 0.46 +0.0
526,405 - GFF528 0.46 -0.2
526,406 + GFF528 0.46 +0.3
526,437 - GFF528 0.48 -1.9
526,472 + GFF528 0.51 -2.1
526,472 + GFF528 0.51 -0.3
526,472 + GFF528 0.51 +1.2
526,482 + GFF528 0.52 -2.2
526,495 + GFF528 0.53 -0.0
526,501 + GFF528 0.54 -0.2
526,517 - GFF528 0.55 -0.3
526,519 + GFF528 0.55 -0.3
526,538 - GFF528 0.57 +1.0
526,602 - GFF528 0.63 -0.0
526,642 - GFF528 0.66 -0.5
526,652 - GFF528 0.67 -0.2
526,659 + GFF528 0.67 -1.3
526,667 - GFF528 0.68 -0.4
526,688 + GFF528 0.70 -1.1
526,722 - GFF528 0.73 -0.2
526,831 + GFF528 0.82 -0.3
526,878 - GFF528 0.86 +0.1
526,904 - GFF528 0.89 -1.0
526,938 + -0.9
526,938 + +0.3
526,938 + +0.6
526,938 + +1.5
526,943 + -1.0
526,943 + -0.8
526,946 - +1.3
526,946 - -0.3
526,946 - +0.5
526,946 - -0.3
526,951 - +2.4
526,951 - -1.6
526,951 - +2.5
526,956 + -0.3
526,963 - -0.6
526,964 - -2.5
526,964 - +0.2
526,964 - +1.2
526,966 + -1.3
526,974 - +0.5
527,032 - +0.3
527,036 + -0.1
527,044 - -1.0
527,044 - +0.2
527,106 + GFF529 0.22 +1.2
527,114 - GFF529 0.25 +0.3
527,114 - GFF529 0.25 -0.3
527,171 + GFF529 0.45 -0.4
527,197 + GFF529 0.54 +0.4
527,217 + GFF529 0.60 -0.2
527,217 + GFF529 0.60 -0.3
527,217 + GFF529 0.60 +0.5
527,225 - GFF529 0.63 -0.4
527,230 - GFF529 0.65 -0.5
527,263 + GFF529 0.76 +1.4
527,294 + GFF529 0.87 +1.2
527,300 - GFF529 0.89 -0.1
527,328 - +0.4
527,334 + -0.2
527,353 + -0.6
527,361 - -0.2
527,361 - -1.2
527,377 - +0.1
527,409 + -0.3
527,409 + -0.4
527,427 + -0.0
527,464 - GFF530 0.10 +0.0
527,481 + GFF530 0.12 -0.4
527,488 - GFF530 0.13 +1.1
527,489 - GFF530 0.13 +0.3
527,517 - GFF530 0.16 +0.2
527,526 + GFF530 0.17 +0.4
527,531 + GFF530 0.17 +2.7
527,534 + GFF530 0.18 +0.1
527,534 - GFF530 0.18 -0.7
527,540 - GFF530 0.18 -1.5
527,578 + GFF530 0.22 +1.2
527,578 + GFF530 0.22 +1.4
527,586 - GFF530 0.23 +1.5
527,601 - GFF530 0.25 -1.4
527,613 - GFF530 0.26 -0.4
527,627 + GFF530 0.28 -1.5
527,635 - GFF530 0.29 +1.9
527,693 + GFF530 0.35 +0.3
527,693 + GFF530 0.35 +0.5
527,701 - GFF530 0.36 -0.2
527,723 + GFF530 0.38 +0.2
527,766 + GFF530 0.43 -1.4
527,766 + GFF530 0.43 +0.7
527,768 + GFF530 0.43 -0.2
527,768 + GFF530 0.43 +0.3
527,768 + GFF530 0.43 -0.5
527,768 + GFF530 0.43 +1.0
527,776 - GFF530 0.44 -1.2
527,776 - GFF530 0.44 -0.4
527,776 - GFF530 0.44 -0.4
527,776 - GFF530 0.44 -0.0
527,817 + GFF530 0.48 -0.6
527,825 - GFF530 0.49 -1.2
527,830 - GFF530 0.50 -1.9
527,831 - GFF530 0.50 +0.5
527,859 - GFF530 0.53 +0.2
527,877 + GFF530 0.55 +0.2
527,883 - GFF530 0.55 -0.0
527,883 - GFF530 0.55 -1.0
527,930 + GFF530 0.60 +1.7
527,932 + GFF530 0.61 -0.5
527,938 - GFF530 0.61 -2.1
527,944 + GFF530 0.62 -0.3
527,945 - GFF530 0.62 -2.1
527,965 + GFF530 0.64 -0.3
527,978 - GFF530 0.66 -1.6
528,007 - GFF530 0.69 -1.0
528,007 - GFF530 0.69 +1.0

Or see this region's nucleotide sequence