Strain Fitness in Sphingobium sp. HT1-2 around GFF5241

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,235,650	+		GFF5240	0.35	-2.2
5,235,658	-		GFF5240	0.36	-1.8
5,235,663	-		GFF5240	0.37	-0.7
5,235,684	+		GFF5240	0.40	-1.3
5,235,684	+		GFF5240	0.40	-0.4
5,235,684	+		GFF5240	0.40	+0.1
5,235,684	+		GFF5240	0.40	-0.1
5,235,684	+		GFF5240	0.40	+0.8
5,235,684	+		GFF5240	0.40	-0.1
5,235,684	+		GFF5240	0.40	+0.3
5,235,684	+		GFF5240	0.40	+0.2
5,235,689	+		GFF5240	0.41	-0.6
5,235,689	+		GFF5240	0.41	-0.7
5,235,692	-		GFF5240	0.41	+1.2
5,235,692	-		GFF5240	0.41	-1.2
5,235,692	-		GFF5240	0.41	-1.6
5,235,692	-		GFF5240	0.41	+0.7
5,235,692	-		GFF5240	0.41	+0.1
5,235,692	-		GFF5240	0.41	+0.4
5,235,692	-		GFF5240	0.41	-0.6
5,235,692	-		GFF5240	0.41	+0.1
5,235,692	-		GFF5240	0.41	-0.8
5,235,692	-		GFF5240	0.41	+0.1
5,235,692	-		GFF5240	0.41	+1.3
5,235,697	-		GFF5240	0.42	-0.0
5,235,697	-		GFF5240	0.42	+0.2
5,235,697	-		GFF5240	0.42	+0.5
5,235,697	-		GFF5240	0.42	+0.1
5,235,697	-		GFF5240	0.42	+0.3
5,235,699	-		GFF5240	0.43	+1.0
5,235,730	+		GFF5240	0.47	-0.2
5,235,767	-		GFF5240	0.53	+0.8
5,235,781	+		GFF5240	0.55	-1.3
5,235,789	-		GFF5240	0.56	+1.1
5,235,789	-		GFF5240	0.56	-0.7
5,235,789	-		GFF5240	0.56	-0.4
5,235,796	+		GFF5240	0.57	-0.4
5,235,844	+		GFF5240	0.64	-1.8
5,235,849	+		GFF5240	0.65	-1.4
5,235,849	+		GFF5240	0.65	-2.0
5,235,849	+		GFF5240	0.65	-1.3
5,235,857	-		GFF5240	0.66	-0.3
5,235,857	-		GFF5240	0.66	+0.1
5,235,857	-		GFF5240	0.66	+0.0
5,235,877	-		GFF5240	0.69	+1.1
5,235,907	+		GFF5240	0.73	-1.7
5,235,913	+		GFF5240	0.74	-0.6
5,235,921	-		GFF5240	0.75	+0.4
5,235,946	+		GFF5240	0.79	-0.7
5,235,946	+		GFF5240	0.79	-0.6
5,235,946	+		GFF5240	0.79	-1.7
5,235,946	+		GFF5240	0.79	-2.3
5,235,954	-		GFF5240	0.80	-0.1
5,235,954	-		GFF5240	0.80	+0.4
5,235,954	-		GFF5240	0.80	-0.1
5,235,954	-		GFF5240	0.80	-1.5
5,235,959	-		GFF5240	0.81	-0.4
5,235,959	-		GFF5240	0.81	-1.2
5,235,988	+		GFF5240	0.85	+0.3
5,235,988	+		GFF5240	0.85	+0.1
5,236,022	+				+0.9
5,236,030	-				+0.2
5,236,050	-				-0.9
5,236,070	-				-1.0
5,236,130	+				+0.4
5,236,174	+				-0.8
5,236,179	-				+0.5
5,236,179	-				-1.1
5,236,188	-				-2.1
5,236,212	+				-0.6
5,236,250	+				+1.0
5,236,250	+				+0.8
5,236,250	+				+0.7
5,236,250	+				+1.4
5,236,254	-				+0.5
5,236,258	-				-1.7
5,236,258	-				+0.2
5,236,258	-				-1.6
5,236,261	-				+0.2
5,236,261	-				-0.5
5,236,263	+				-0.5
5,236,263	+				-0.7
5,236,274	+				-0.8
5,236,279	+				-1.3
5,236,282	-				-2.3
5,236,282	-				-0.6
5,236,282	-				-0.6
5,236,282	-				+0.4
5,236,310	-				-2.0
5,236,315	+				-0.4
5,236,323	-				-0.0
5,236,331	-				+0.4
5,236,331	-				+0.8
5,236,331	-				-0.2
5,236,338	-				-0.6
5,236,338	-				-1.5
5,236,364	-				+0.2
5,236,364	-				+1.4
5,236,366	+				-0.4
5,236,366	+				+0.7
5,236,366	+				+0.6
5,236,366	+				-1.0
5,236,366	-				-0.8
5,236,368	+				+0.3
5,236,374	-				-0.6
5,236,374	-				-0.4
5,236,423	+				-0.3
5,236,424	+				+0.4
5,236,432	-				-0.0
5,236,445	-				-0.4
5,236,450	+				-0.2
5,236,450	+				-0.0
5,236,456	+				+0.0
5,236,456	+				-0.7
5,236,456	+				-0.0
5,236,456	+				-1.4
5,236,463	+				+0.8
5,236,490	-				+0.3
5,236,492	-				+1.3
5,236,492	-				-0.9
5,236,553	+				+0.3
5,236,563	+				+0.7
5,236,607	+				+1.2
5,236,623	-				+0.4
5,236,651	+				-0.2
5,236,651	+				+0.0
5,236,651	+				-0.3
5,236,651	+				+0.4
5,236,651	+				-0.2
5,236,651	+				+0.3
5,236,651	+				-0.7
5,236,651	+				+0.9
5,236,651	+				-0.4
5,236,651	+				+1.0
5,236,651	+				+0.2
5,236,651	+				-0.5
5,236,651	+				-1.6
5,236,651	+				-0.1
5,236,651	+				+0.3
5,236,651	+				+1.3
5,236,651	+				-0.7
5,236,651	+				-2.1
5,236,651	+				-0.6
5,236,651	+				+2.0
5,236,651	+				-0.9
5,236,651	+				+1.9
5,236,651	+				-0.5
5,236,651	+				-1.6
5,236,651	+				-0.6
5,236,651	+				-0.8
5,236,659	-				-0.0
5,236,659	-				-1.8
5,236,659	-				-0.3
5,236,659	-				-1.1
5,236,659	-				-0.6
5,236,659	-				+0.7
5,236,659	-				-0.4
5,236,659	-				-0.6
5,236,659	-				-0.3
5,236,659	-				-1.9
5,236,659	-				+0.2
5,236,659	-				+0.6
5,236,659	-				-1.0
5,236,659	-				-0.3
5,236,695	+		GFF5241	0.14	-0.9
5,236,703	-		GFF5241	0.15	-2.3
5,236,708	-		GFF5241	0.16	-0.8
5,236,710	+		GFF5241	0.16	+0.5
5,236,743	+		GFF5241	0.22	-1.0
5,236,747	-		GFF5241	0.23	-2.3
5,236,754	-		GFF5241	0.24	-0.9
5,236,776	+		GFF5241	0.28	-0.1
5,236,787	-		GFF5241	0.30	-2.4
5,236,797	+		GFF5241	0.32	+0.7
5,236,871	+		GFF5241	0.45	-0.7
5,236,874	-		GFF5241	0.45	-2.4
5,236,879	-		GFF5241	0.46	-0.5
5,236,879	-		GFF5241	0.46	-0.2
5,236,879	-		GFF5241	0.46	-0.8
5,236,890	+		GFF5241	0.48	+1.9
5,236,913	+		GFF5241	0.52	+1.0
5,236,913	+		GFF5241	0.52	-0.9
5,236,921	-		GFF5241	0.53	-1.6
5,236,924	+		GFF5241	0.54	-1.8
5,236,930	+		GFF5241	0.55	+0.1
5,236,938	+		GFF5241	0.56	-2.0
5,236,938	-		GFF5241	0.56	-1.7
5,236,951	+		GFF5241	0.59	-0.8
5,236,971	-		GFF5241	0.62	-2.1
5,236,973	+		GFF5241	0.63	+0.9
5,236,973	+		GFF5241	0.63	-2.6
5,236,978	+		GFF5241	0.63	+0.4
5,236,978	+		GFF5241	0.63	-1.4
5,236,981	-		GFF5241	0.64	-1.1
5,236,983	+		GFF5241	0.64	-0.9
5,236,983	+		GFF5241	0.64	-1.1
5,236,983	+		GFF5241	0.64	-1.6
5,236,983	+		GFF5241	0.64	-1.4
5,236,983	+		GFF5241	0.64	-0.3
5,236,983	+		GFF5241	0.64	-0.9
5,236,983	+		GFF5241	0.64	-2.6
5,236,983	+		GFF5241	0.64	-0.2
5,236,986	-		GFF5241	0.65	-1.2
5,236,988	+		GFF5241	0.65	-0.7
5,236,991	-		GFF5241	0.66	+0.0
5,236,991	-		GFF5241	0.66	-2.1
5,236,991	-		GFF5241	0.66	-0.8
5,236,991	-		GFF5241	0.66	-2.2
5,236,991	-		GFF5241	0.66	-2.6
5,236,991	-		GFF5241	0.66	-1.7
5,236,991	-		GFF5241	0.66	-1.8
5,236,991	-		GFF5241	0.66	-1.8
5,236,991	-		GFF5241	0.66	-0.6
5,236,991	-		GFF5241	0.66	-2.3
5,236,991	-		GFF5241	0.66	-1.8
5,237,017	-		GFF5241	0.70	-1.7
5,237,021	+		GFF5241	0.71	-0.0
5,237,031	+		GFF5241	0.73	+1.2
5,237,031	+		GFF5241	0.73	-1.6
5,237,039	-		GFF5241	0.74	-0.7
5,237,039	-		GFF5241	0.74	-1.1
5,237,045	-		GFF5241	0.75	-1.7
5,237,054	+		GFF5241	0.77	-2.0
5,237,098	+		GFF5241	0.85	-1.7
5,237,118	+		GFF5241	0.88	-1.3
5,237,135	+				-1.6
5,237,135	+				+0.3
5,237,143	-				-0.2
5,237,148	-				-1.6
5,237,165	-				-0.8
5,237,169	-				+1.0
5,237,178	+				+0.5
5,237,178	+				-0.6
5,237,178	+				-2.3
5,237,241	+				-0.3
5,237,243	+				+0.6
5,237,243	+				+0.1
5,237,243	+				-1.2
5,237,243	+				-1.4
5,237,243	+				-1.8
5,237,243	+				-1.2
5,237,245	+				+0.1
5,237,251	-				-0.1
5,237,251	-				-0.9
5,237,280	+				-1.8
5,237,281	-				-0.8
5,237,293	+				-0.6
5,237,293	+				+0.6
5,237,293	+				+0.7
5,237,301	-				-0.4
5,237,301	-				-1.3
5,237,301	-				+0.4
5,237,323	-				-0.3
5,237,324	-				-0.6
5,237,326	+				+0.2
5,237,334	-		GFF5242	0.10	+0.9
5,237,334	-		GFF5242	0.10	-0.8
5,237,347	+		GFF5242	0.12	-0.6
5,237,352	+		GFF5242	0.12	+0.7
5,237,355	-		GFF5242	0.12	-0.3
5,237,372	+		GFF5242	0.14	-1.2
5,237,374	+		GFF5242	0.14	+0.0
5,237,393	+		GFF5242	0.16	+0.6
5,237,395	+		GFF5242	0.17	+1.6
5,237,396	-		GFF5242	0.17	-0.8
5,237,401	-		GFF5242	0.17	-0.1
5,237,410	+		GFF5242	0.18	+0.2
5,237,433	+		GFF5242	0.21	+1.3
5,237,450	+		GFF5242	0.22	+0.3
5,237,458	+		GFF5242	0.23	-2.1
5,237,458	+		GFF5242	0.23	+0.5
5,237,463	+		GFF5242	0.24	-0.4
5,237,466	-		GFF5242	0.24	+0.3
5,237,471	-		GFF5242	0.24	-0.6
5,237,471	-		GFF5242	0.24	-1.5
5,237,471	-		GFF5242	0.24	+0.2
5,237,472	+		GFF5242	0.25	-1.6
5,237,476	-		GFF5242	0.25	-0.6
5,237,476	-		GFF5242	0.25	+0.2
5,237,476	-		GFF5242	0.25	-0.3
5,237,483	+		GFF5242	0.26	+0.4
5,237,502	-		GFF5242	0.28	+0.4
5,237,511	+		GFF5242	0.29	+0.0
5,237,511	+		GFF5242	0.29	+0.2
5,237,524	+		GFF5242	0.30	+0.3
5,237,598	+		GFF5242	0.38	+0.4
5,237,598	+		GFF5242	0.38	-1.8
5,237,602	+		GFF5242	0.38	-0.2
5,237,632	+		GFF5242	0.41	+0.3
5,237,637	+		GFF5242	0.42	-0.9
5,237,637	+		GFF5242	0.42	+0.0
5,237,640	-		GFF5242	0.42	+0.6
5,237,640	-		GFF5242	0.42	-0.1
5,237,645	-		GFF5242	0.42	-0.6
5,237,650	-		GFF5242	0.43	+0.2
5,237,685	+		GFF5242	0.47	-1.7
5,237,685	+		GFF5242	0.47	+1.1
5,237,685	+		GFF5242	0.47	+0.7
5,237,685	+		GFF5242	0.47	-1.7
5,237,685	+		GFF5242	0.47	-0.7
5,237,685	+		GFF5242	0.47	-0.7
5,237,685	+		GFF5242	0.47	-1.1
5,237,685	+		GFF5242	0.47	+0.6
5,237,685	+		GFF5242	0.47	+1.3
5,237,685	+		GFF5242	0.47	-1.4
5,237,685	+		GFF5242	0.47	-2.1
5,237,685	+		GFF5242	0.47	-0.9
5,237,685	+		GFF5242	0.47	+0.5
5,237,685	+		GFF5242	0.47	+0.1
5,237,685	+		GFF5242	0.47	+0.4
5,237,685	+		GFF5242	0.47	+0.8
5,237,685	+		GFF5242	0.47	+0.2
5,237,692	-		GFF5242	0.47	+0.4
5,237,693	-		GFF5242	0.47	+0.4
5,237,693	-		GFF5242	0.47	-1.6
5,237,693	-		GFF5242	0.47	+0.9
5,237,693	-		GFF5242	0.47	+1.6
5,237,693	-		GFF5242	0.47	-1.8
5,237,693	-		GFF5242	0.47	+0.1
5,237,693	-		GFF5242	0.47	-1.0
5,237,693	-		GFF5242	0.47	+0.2
5,237,703	-		GFF5242	0.48	+0.6
5,237,738	+		GFF5242	0.52	+0.3
5,237,740	-		GFF5242	0.52	-2.6
5,237,751	-		GFF5242	0.53	-2.4
5,237,751	-		GFF5242	0.53	-2.2
5,237,756	-		GFF5242	0.54	-0.2
5,237,797	-		GFF5242	0.58	+0.2
5,237,830	+		GFF5242	0.62	-2.0
5,237,831	+		GFF5242	0.62	-0.2
5,237,832	+		GFF5242	0.62	-1.6
5,237,832	+		GFF5242	0.62	+0.3
5,237,836	+		GFF5242	0.62	-1.2
5,237,846	+		GFF5242	0.63	+0.2
5,237,867	-		GFF5242	0.65	-2.2
5,237,877	+		GFF5242	0.66	+0.3
5,237,885	-		GFF5242	0.67	+0.7
5,237,894	+		GFF5242	0.68	+0.2
5,237,912	+		GFF5242	0.70	-2.2
5,237,920	-		GFF5242	0.71	-2.2
5,237,923	+		GFF5242	0.71	+0.3
5,237,935	-		GFF5242	0.72	+1.0
5,237,940	+		GFF5242	0.73	-1.2
5,237,940	+		GFF5242	0.73	-0.4
5,237,940	+		GFF5242	0.73	-0.2
5,237,940	+		GFF5242	0.73	+0.4
5,237,946	+		GFF5242	0.73	-0.9
5,237,948	-		GFF5242	0.74	+0.7
5,237,948	-		GFF5242	0.74	-0.6
5,237,948	-		GFF5242	0.74	+0.0
5,237,948	-		GFF5242	0.74	+0.2
5,237,951	+		GFF5242	0.74	-0.8
5,237,951	+		GFF5242	0.74	+0.6
5,237,951	+		GFF5242	0.74	+0.9
5,237,951	+		GFF5242	0.74	-0.2
5,237,954	-		GFF5242	0.74	+0.2
5,237,956	+		GFF5242	0.75	-1.1
5,237,956	+		GFF5242	0.75	-1.9
5,237,956	+		GFF5242	0.75	+1.0
5,237,959	-		GFF5242	0.75	-0.0
5,237,959	-		GFF5242	0.75	-1.4
5,237,959	-		GFF5242	0.75	-0.5
5,237,959	-		GFF5242	0.75	+0.4
5,237,961	+		GFF5242	0.75	-0.1
5,237,961	+		GFF5242	0.75	+0.3
5,237,961	+		GFF5242	0.75	+1.2
5,237,961	+		GFF5242	0.75	-0.3
5,237,964	-		GFF5242	0.75	+0.1
5,237,969	-		GFF5242	0.76	-0.7
5,237,989	+		GFF5242	0.78	-0.3
5,237,992	-		GFF5242	0.78	+0.4
5,237,997	-		GFF5242	0.79	+0.3
5,238,039	+		GFF5242	0.83	-0.0
5,238,039	+		GFF5242	0.83	+0.3
5,238,039	+		GFF5242	0.83	+0.1
5,238,039	+		GFF5242	0.83	-0.9
5,238,039	+		GFF5242	0.83	-1.1
5,238,039	-		GFF5242	0.83	-1.9
5,238,047	-		GFF5242	0.84	-0.1
5,238,047	-		GFF5242	0.84	+0.2
5,238,047	-		GFF5242	0.84	+0.5
5,238,073	-		GFF5242	0.87	-0.7
5,238,081	-		GFF5242	0.87	-0.3
5,238,127	-				-0.1
5,238,145	+				-3.0
5,238,155	+				+0.3
5,238,155	+				-1.1
5,238,155	+				+1.1
5,238,155	+				-1.8
5,238,155	+				-0.0
5,238,155	+				+0.4
5,238,163	-				-0.3
5,238,163	-				-1.1
5,238,174	-				+0.2