Strain Fitness in Sphingobium sp. HT1-2 around GFF5237

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,229,953	-		GFF5235	0.83	+0.3
5,229,953	-		GFF5235	0.83	+0.5
5,229,958	-		GFF5235	0.84	-0.1
5,229,968	-		GFF5235	0.85	-1.5
5,229,993	-		GFF5235	0.87	-0.9
5,229,994	-		GFF5235	0.87	-0.3
5,230,030	+		GFF5235	0.90	-0.1
5,230,030	+		GFF5235	0.90	-0.2
5,230,030	+		GFF5235	0.90	-0.7
5,230,030	+		GFF5235	0.90	+0.5
5,230,038	-				-2.0
5,230,038	-				+0.2
5,230,038	-				+0.5
5,230,038	-				-0.8
5,230,038	-				+0.7
5,230,038	-				-0.2
5,230,038	-				-0.1
5,230,050	+				+0.2
5,230,061	+				-1.1
5,230,066	+				-2.0
5,230,066	+				+0.3
5,230,071	+				-0.6
5,230,071	+				-1.3
5,230,074	-				-0.6
5,230,076	+				+0.2
5,230,076	+				+0.8
5,230,076	+				+0.0
5,230,076	+				-0.1
5,230,076	+				+0.7
5,230,076	+				+0.5
5,230,076	+				+0.4
5,230,076	+				-1.6
5,230,076	+				-0.2
5,230,076	+				-2.2
5,230,076	+				-1.9
5,230,076	+				+0.0
5,230,076	+				-1.9
5,230,076	+				+0.4
5,230,076	+				-0.8
5,230,076	+				+0.1
5,230,079	-				+0.6
5,230,079	-				-1.6
5,230,084	-				-0.1
5,230,084	-				-1.0
5,230,084	-				+0.6
5,230,084	-				-0.1
5,230,084	-				+1.5
5,230,084	-				-0.2
5,230,084	-				+0.9
5,230,084	-				-0.3
5,230,084	-				-0.0
5,230,084	-				-0.1
5,230,084	-				+1.8
5,230,084	-				-2.0
5,230,084	-				-0.6
5,230,084	-				-0.7
5,230,084	-				-0.9
5,230,084	-				-0.5
5,230,084	-				+0.6
5,230,086	+				-1.3
5,230,111	+				+0.7
5,230,119	-				+0.3
5,230,121	+				-1.6
5,230,130	+				-0.6
5,230,130	+				-0.1
5,230,132	+				-0.4
5,230,138	-				+0.6
5,230,145	-				-0.3
5,230,145	-				-0.3
5,230,151	-				-1.5
5,230,160	+				+0.1
5,230,168	-				+0.3
5,230,222	+				+0.2
5,230,276	+		GFF5236	0.16	+1.3
5,230,317	+		GFF5236	0.21	-1.2
5,230,339	+		GFF5236	0.24	-1.1
5,230,354	+		GFF5236	0.26	+0.6
5,230,368	-		GFF5236	0.28	+0.6
5,230,372	-		GFF5236	0.28	-0.2
5,230,400	-		GFF5236	0.32	-1.9
5,230,402	+		GFF5236	0.32	-1.9
5,230,403	+		GFF5236	0.32	+1.6
5,230,420	+		GFF5236	0.34	-1.6
5,230,428	-		GFF5236	0.36	+0.6
5,230,438	-		GFF5236	0.37	-0.2
5,230,447	-		GFF5236	0.38	-1.1
5,230,448	+		GFF5236	0.38	+0.8
5,230,449	+		GFF5236	0.38	-0.1
5,230,456	-		GFF5236	0.39	+0.4
5,230,458	-		GFF5236	0.39	-0.8
5,230,458	-		GFF5236	0.39	+0.4
5,230,464	-		GFF5236	0.40	-0.2
5,230,464	-		GFF5236	0.40	+0.1
5,230,473	-		GFF5236	0.41	+0.3
5,230,478	+		GFF5236	0.42	+0.6
5,230,478	+		GFF5236	0.42	-0.4
5,230,478	+		GFF5236	0.42	-0.6
5,230,478	+		GFF5236	0.42	+1.2
5,230,479	+		GFF5236	0.42	+0.7
5,230,480	+		GFF5236	0.42	+0.4
5,230,485	+		GFF5236	0.43	-1.1
5,230,486	-		GFF5236	0.43	+0.6
5,230,486	-		GFF5236	0.43	+1.1
5,230,486	-		GFF5236	0.43	-1.5
5,230,488	-		GFF5236	0.43	+0.3
5,230,497	+		GFF5236	0.44	+0.5
5,230,541	-		GFF5236	0.50	-0.0
5,230,559	-		GFF5236	0.52	+0.8
5,230,572	+		GFF5236	0.54	+1.1
5,230,585	+		GFF5236	0.56	+0.2
5,230,585	+		GFF5236	0.56	-1.4
5,230,597	+		GFF5236	0.57	+0.5
5,230,597	+		GFF5236	0.57	+0.9
5,230,597	+		GFF5236	0.57	+1.3
5,230,597	+		GFF5236	0.57	-0.7
5,230,605	-		GFF5236	0.58	+0.5
5,230,605	-		GFF5236	0.58	+0.3
5,230,605	-		GFF5236	0.58	-1.3
5,230,605	-		GFF5236	0.58	+0.8
5,230,605	-		GFF5236	0.58	+0.8
5,230,605	-		GFF5236	0.58	+0.7
5,230,612	+		GFF5236	0.59	-1.8
5,230,620	-		GFF5236	0.60	-1.6
5,230,623	-		GFF5236	0.61	+1.0
5,230,623	-		GFF5236	0.61	+0.1
5,230,632	+		GFF5236	0.62	+1.4
5,230,632	+		GFF5236	0.62	-1.1
5,230,653	+		GFF5236	0.65	-2.3
5,230,661	-		GFF5236	0.66	-0.6
5,230,665	+		GFF5236	0.66	-1.1
5,230,678	-		GFF5236	0.68	+0.1
5,230,690	+		GFF5236	0.69	+0.3
5,230,719	+		GFF5236	0.73	-2.6
5,230,725	-		GFF5236	0.74	+0.3
5,230,729	+		GFF5236	0.74	+0.3
5,230,734	+		GFF5236	0.75	-0.8
5,230,734	+		GFF5236	0.75	-0.1
5,230,734	+		GFF5236	0.75	-1.1
5,230,742	-		GFF5236	0.76	-0.8
5,230,742	-		GFF5236	0.76	-1.2
5,230,742	-		GFF5236	0.76	+0.1
5,230,742	-		GFF5236	0.76	+0.3
5,230,769	+		GFF5236	0.80	-1.3
5,230,775	+		GFF5236	0.80	+1.0
5,230,775	+		GFF5236	0.80	-0.9
5,230,775	+		GFF5236	0.80	-0.3
5,230,775	+		GFF5236	0.80	-0.7
5,230,777	-		GFF5236	0.81	-0.9
5,230,783	-		GFF5236	0.81	-1.3
5,230,783	-		GFF5236	0.81	-1.9
5,230,806	-		GFF5236	0.84	-0.6
5,230,820	+		GFF5236	0.86	-0.1
5,230,820	+		GFF5236	0.86	-1.7
5,230,887	-				-0.9
5,230,903	+				-1.9
5,230,911	-				+0.0
5,230,920	+				+0.9
5,230,922	+				+0.6
5,230,922	+				+0.3
5,230,941	-				-1.9
5,230,946	+				-1.2
5,230,948	-				+0.7
5,230,999	+				+0.2
5,230,999	+				-1.7
5,231,000	+				-0.7
5,231,010	+				-1.3
5,231,020	+				-0.3
5,231,025	+				-0.2
5,231,025	+				-0.4
5,231,044	+		GFF5237	0.10	-2.1
5,231,044	+		GFF5237	0.10	+0.1
5,231,052	-		GFF5237	0.11	-1.6
5,231,093	+		GFF5237	0.14	-0.4
5,231,093	+		GFF5237	0.14	-0.1
5,231,093	+		GFF5237	0.14	-1.3
5,231,093	+		GFF5237	0.14	+0.4
5,231,093	+		GFF5237	0.14	-0.1
5,231,093	+		GFF5237	0.14	+0.7
5,231,093	+		GFF5237	0.14	-0.9
5,231,101	-		GFF5237	0.15	-0.3
5,231,101	-		GFF5237	0.15	-0.2
5,231,101	-		GFF5237	0.15	+0.3
5,231,101	-		GFF5237	0.15	+0.3
5,231,101	-		GFF5237	0.15	-0.8
5,231,101	-		GFF5237	0.15	+0.5
5,231,101	-		GFF5237	0.15	+1.7
5,231,101	-		GFF5237	0.15	-1.2
5,231,101	-		GFF5237	0.15	-1.9
5,231,101	-		GFF5237	0.15	+0.4
5,231,101	-		GFF5237	0.15	-0.8
5,231,103	+		GFF5237	0.15	-0.8
5,231,111	-		GFF5237	0.16	+1.1
5,231,149	-		GFF5237	0.19	+0.7
5,231,150	+		GFF5237	0.19	-2.2
5,231,158	+		GFF5237	0.20	+0.7
5,231,158	+		GFF5237	0.20	+1.3
5,231,158	-		GFF5237	0.20	-0.5
5,231,160	+		GFF5237	0.20	-2.1
5,231,160	+		GFF5237	0.20	-1.2
5,231,166	-		GFF5237	0.20	-0.2
5,231,166	-		GFF5237	0.20	+1.0
5,231,187	-		GFF5237	0.22	+0.4
5,231,195	-		GFF5237	0.23	+0.2
5,231,205	+		GFF5237	0.24	-0.0
5,231,242	-		GFF5237	0.27	-0.8
5,231,244	+		GFF5237	0.27	-2.1
5,231,249	+		GFF5237	0.27	-1.5
5,231,249	+		GFF5237	0.27	-0.4
5,231,302	-		GFF5237	0.32	-1.4
5,231,319	-		GFF5237	0.33	+1.0
5,231,342	-		GFF5237	0.35	-2.7
5,231,343	+		GFF5237	0.35	+0.4
5,231,371	-		GFF5237	0.38	+1.0
5,231,375	+		GFF5237	0.38	-1.3
5,231,375	+		GFF5237	0.38	+2.0
5,231,375	+		GFF5237	0.38	-0.0
5,231,383	-		GFF5237	0.39	-1.0
5,231,427	+		GFF5237	0.42	+1.2
5,231,427	+		GFF5237	0.42	-0.4
5,231,427	+		GFF5237	0.42	+0.5
5,231,427	+		GFF5237	0.42	-0.2
5,231,435	-		GFF5237	0.43	+0.4
5,231,435	-		GFF5237	0.43	+0.2
5,231,435	-		GFF5237	0.43	-0.5
5,231,435	-		GFF5237	0.43	+0.9
5,231,453	-		GFF5237	0.44	+2.0
5,231,453	-		GFF5237	0.44	+0.4
5,231,456	+		GFF5237	0.45	+0.3
5,231,464	+		GFF5237	0.45	+0.4
5,231,471	+		GFF5237	0.46	+0.6
5,231,484	+		GFF5237	0.47	+0.9
5,231,484	+		GFF5237	0.47	+1.2
5,231,484	+		GFF5237	0.47	-0.2
5,231,484	+		GFF5237	0.47	-0.5
5,231,484	+		GFF5237	0.47	-0.2
5,231,484	+		GFF5237	0.47	+0.4
5,231,484	+		GFF5237	0.47	+0.6
5,231,484	+		GFF5237	0.47	+1.7
5,231,489	+		GFF5237	0.47	-1.8
5,231,492	-		GFF5237	0.48	-1.9
5,231,492	-		GFF5237	0.48	-0.4
5,231,492	-		GFF5237	0.48	-1.2
5,231,492	-		GFF5237	0.48	-0.2
5,231,492	-		GFF5237	0.48	-0.4
5,231,492	-		GFF5237	0.48	+0.4
5,231,497	+		GFF5237	0.48	+0.0
5,231,497	+		GFF5237	0.48	-1.1
5,231,497	-		GFF5237	0.48	+0.9
5,231,505	-		GFF5237	0.49	-1.3
5,231,505	-		GFF5237	0.49	+0.8
5,231,517	-		GFF5237	0.50	-1.0
5,231,519	+		GFF5237	0.50	-0.4
5,231,522	-		GFF5237	0.50	-0.2
5,231,522	-		GFF5237	0.50	-0.2
5,231,558	-		GFF5237	0.53	+1.2
5,231,593	+		GFF5237	0.56	-1.1
5,231,595	-		GFF5237	0.56	-1.9
5,231,606	+		GFF5237	0.57	+1.0
5,231,639	-		GFF5237	0.60	+0.3
5,231,639	-		GFF5237	0.60	-0.1
5,231,641	+		GFF5237	0.60	+0.4
5,231,641	+		GFF5237	0.60	-1.6
5,231,677	+		GFF5237	0.63	+0.2
5,231,685	-		GFF5237	0.64	-0.7
5,231,685	-		GFF5237	0.64	+0.4
5,231,685	-		GFF5237	0.64	-0.6
5,231,685	-		GFF5237	0.64	-0.3
5,231,685	-		GFF5237	0.64	-1.4
5,231,685	-		GFF5237	0.64	+0.2
5,231,685	-		GFF5237	0.64	+0.3
5,231,698	+		GFF5237	0.65	-2.1
5,231,698	+		GFF5237	0.65	+0.9
5,231,706	-		GFF5237	0.66	+0.3
5,231,726	+		GFF5237	0.67	+1.5
5,231,726	+		GFF5237	0.67	+1.0
5,231,726	+		GFF5237	0.67	-0.4
5,231,734	-		GFF5237	0.68	+0.4
5,231,734	-		GFF5237	0.68	-1.4
5,231,823	+		GFF5237	0.75	-1.4
5,231,823	+		GFF5237	0.75	-0.3
5,231,831	-		GFF5237	0.76	-0.2
5,231,831	-		GFF5237	0.76	+0.2
5,231,836	-		GFF5237	0.76	-1.2
5,231,855	+		GFF5237	0.78	+0.1
5,231,856	+		GFF5237	0.78	-0.6
5,231,856	+		GFF5237	0.78	-0.7
5,231,862	+		GFF5237	0.79	-0.2
5,231,919	+		GFF5237	0.83	-0.2
5,231,919	+		GFF5237	0.83	-0.5
5,231,919	+		GFF5237	0.83	-0.4
5,231,919	+		GFF5237	0.83	-0.2
5,231,919	+		GFF5237	0.83	+0.1
5,231,919	+		GFF5237	0.83	-0.1
5,231,919	+		GFF5237	0.83	-0.1
5,231,919	+		GFF5237	0.83	+0.2
5,231,924	+		GFF5237	0.84	-0.4
5,231,924	+		GFF5237	0.84	+0.9
5,231,924	+		GFF5237	0.84	+1.1
5,231,924	+		GFF5237	0.84	+0.2
5,231,924	+		GFF5237	0.84	-0.8
5,231,924	+		GFF5237	0.84	-2.5
5,231,924	+		GFF5237	0.84	-0.4
5,231,924	+		GFF5237	0.84	-1.1
5,231,924	+		GFF5237	0.84	-0.3
5,231,926	-		GFF5237	0.84	+0.0
5,231,927	-		GFF5237	0.84	-1.5
5,231,927	-		GFF5237	0.84	-1.2
5,231,927	-		GFF5237	0.84	+0.1
5,231,927	-		GFF5237	0.84	+1.2
5,231,927	-		GFF5237	0.84	+0.1
5,231,927	-		GFF5237	0.84	-1.6
5,231,927	-		GFF5237	0.84	-0.4
5,231,927	-		GFF5237	0.84	+0.5
5,231,932	-		GFF5237	0.85	+0.3
5,231,932	-		GFF5237	0.85	-2.0
5,231,932	-		GFF5237	0.85	+1.1
5,231,932	-		GFF5237	0.85	-0.1
5,231,932	-		GFF5237	0.85	+0.1
5,231,932	-		GFF5237	0.85	-2.1
5,231,932	-		GFF5237	0.85	+0.6
5,231,932	-		GFF5237	0.85	+0.3
5,231,932	-		GFF5237	0.85	-1.3
5,231,946	-		GFF5237	0.86	+0.2
5,231,946	-		GFF5237	0.86	+0.9
5,231,957	+		GFF5237	0.87	-0.1
5,231,957	+		GFF5237	0.87	+0.7
5,231,957	+		GFF5237	0.87	+0.8
5,231,957	+		GFF5237	0.87	-1.0
5,231,957	+		GFF5237	0.87	+0.4
5,231,957	+		GFF5237	0.87	-0.2
5,231,957	+		GFF5237	0.87	-0.4
5,231,965	-		GFF5237	0.87	+0.7
5,231,965	-		GFF5237	0.87	+0.6
5,231,965	-		GFF5237	0.87	-0.7
5,231,965	-		GFF5237	0.87	+0.2
5,231,965	-		GFF5237	0.87	+1.0
5,231,965	-		GFF5237	0.87	+0.1
5,231,965	-		GFF5237	0.87	-1.4
5,231,974	+		GFF5237	0.88	+1.1
5,231,990	-		GFF5237	0.89	+1.8
5,231,990	-		GFF5237	0.89	+1.0
5,231,990	-		GFF5237	0.89	-0.7
5,232,006	-				-2.2
5,232,051	-				+0.2
5,232,064	+				-0.4
5,232,110	+				+0.7
5,232,118	-				-1.0
5,232,120	+				+1.7
5,232,120	-				-1.3
5,232,128	-				-1.4
5,232,144	-				+1.4
5,232,144	-				+0.5
5,232,151	+				-0.4
5,232,178	+				-0.3
5,232,234	+				+1.2
5,232,253	+				+0.3
5,232,284	-		GFF5238	0.12	-0.7
5,232,290	-		GFF5238	0.12	+1.3
5,232,293	-		GFF5238	0.13	-0.4
5,232,308	+		GFF5238	0.14	+0.4
5,232,308	+		GFF5238	0.14	-1.3
5,232,308	+		GFF5238	0.14	-0.7
5,232,308	+		GFF5238	0.14	-1.1
5,232,350	+		GFF5238	0.17	+1.2
5,232,358	-		GFF5238	0.17	+0.1
5,232,358	-		GFF5238	0.17	-0.8
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