Strain Fitness in Sphingobium sp. HT1-2 around GFF5211

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,206,094	+		GFF5210	0.45	+1.8
5,206,094	+		GFF5210	0.45	+0.7
5,206,094	+		GFF5210	0.45	+0.5
5,206,094	+		GFF5210	0.45	+0.4
5,206,094	+		GFF5210	0.45	+0.6
5,206,094	+		GFF5210	0.45	+1.1
5,206,094	+		GFF5210	0.45	+0.8
5,206,096	+		GFF5210	0.45	-0.2
5,206,102	-		GFF5210	0.46	+1.4
5,206,102	-		GFF5210	0.46	-0.3
5,206,102	-		GFF5210	0.46	+0.8
5,206,102	-		GFF5210	0.46	-0.3
5,206,102	-		GFF5210	0.46	-0.4
5,206,102	-		GFF5210	0.46	+0.1
5,206,102	-		GFF5210	0.46	+0.8
5,206,102	-		GFF5210	0.46	-0.4
5,206,102	-		GFF5210	0.46	+0.7
5,206,102	-		GFF5210	0.46	-1.8
5,206,104	-		GFF5210	0.46	-0.4
5,206,129	-		GFF5210	0.47	-0.4
5,206,133	-		GFF5210	0.47	+0.3
5,206,179	-		GFF5210	0.50	+0.2
5,206,180	-		GFF5210	0.50	-1.2
5,206,306	-		GFF5210	0.57	-0.4
5,206,315	+		GFF5210	0.58	-1.2
5,206,325	+		GFF5210	0.58	-1.3
5,206,330	-		GFF5210	0.59	-0.2
5,206,360	+		GFF5210	0.60	+1.3
5,206,360	+		GFF5210	0.60	-0.0
5,206,378	-		GFF5210	0.61	-0.0
5,206,406	+		GFF5210	0.63	+1.2
5,206,423	+		GFF5210	0.64	-0.4
5,206,442	+		GFF5210	0.65	+0.2
5,206,476	+		GFF5210	0.67	+0.1
5,206,554	+		GFF5210	0.71	-0.4
5,206,566	+		GFF5210	0.72	+0.4
5,206,574	-		GFF5210	0.73	+0.0
5,206,596	-		GFF5210	0.74	+1.4
5,206,634	+		GFF5210	0.76	+0.5
5,206,671	+		GFF5210	0.78	-0.4
5,206,689	-		GFF5210	0.79	-0.2
5,206,820	+		GFF5210	0.87	+1.7
5,206,878	+		GFF5210	0.90	+0.4
5,206,879	+				+0.0
5,206,888	-				-1.0
5,206,889	-				+0.7
5,206,890	+				-0.7
5,206,891	+				+0.5
5,206,898	-				+0.2
5,206,900	+				+1.1
5,206,917	+				+0.1
5,206,917	+				+1.0
5,206,918	-				+0.4
5,206,925	-				+2.6
5,206,925	-				-0.3
5,206,925	-				-0.3
5,207,006	-				+0.1
5,207,011	-				+1.3
5,207,020	+				+0.9
5,207,028	-				+0.9
5,207,056	-				-1.4
5,207,063	-				+0.2
5,207,063	-				+0.3
5,207,063	-				-0.4
5,207,063	-				+0.4
5,207,063	-				-1.3
5,207,063	-				+1.5
5,207,065	+				-1.8
5,207,065	+				-0.5
5,207,073	-				-1.2
5,207,073	-				+0.7
5,207,122	+				-0.5
5,207,140	+				+2.3
5,207,149	+				-0.1
5,207,151	+				+0.6
5,207,177	-				+0.9
5,207,205	+		GFF5211	0.10	+0.0
5,207,205	+		GFF5211	0.10	+1.4
5,207,212	-		GFF5211	0.11	-2.0
5,207,243	-		GFF5211	0.13	+0.9
5,207,270	-		GFF5211	0.15	+0.1
5,207,275	-		GFF5211	0.15	+0.5
5,207,275	-		GFF5211	0.15	+0.4
5,207,302	-		GFF5211	0.17	-0.3
5,207,439	-		GFF5211	0.27	+1.2
5,207,445	+		GFF5211	0.27	-0.5
5,207,469	+		GFF5211	0.29	+0.3
5,207,576	+		GFF5211	0.36	+0.8
5,207,576	+		GFF5211	0.36	-0.2
5,207,581	+		GFF5211	0.37	+0.8
5,207,591	+		GFF5211	0.37	-0.7
5,207,598	+		GFF5211	0.38	+0.8
5,207,647	-		GFF5211	0.41	-1.1
5,207,647	-		GFF5211	0.41	-0.8
5,207,683	+		GFF5211	0.44	-0.6
5,207,765	-		GFF5211	0.50	-0.8
5,207,770	-		GFF5211	0.50	+0.7
5,207,842	+		GFF5211	0.55	-0.0
5,207,852	+		GFF5211	0.56	+0.8
5,207,862	+		GFF5211	0.56	-0.7
5,207,899	+		GFF5211	0.59	+0.2
5,207,913	+		GFF5211	0.60	-0.3
5,207,914	+		GFF5211	0.60	-0.8
5,207,935	+		GFF5211	0.61	-0.1
5,207,948	+		GFF5211	0.62	-0.8
5,207,985	+		GFF5211	0.65	+1.5
5,207,985	+		GFF5211	0.65	+0.2
5,207,985	+		GFF5211	0.65	-1.1
5,207,990	+		GFF5211	0.65	+0.7
5,207,990	+		GFF5211	0.65	+0.7
5,207,993	-		GFF5211	0.65	-0.9
5,207,993	-		GFF5211	0.65	+0.1
5,207,998	-		GFF5211	0.66	+1.2
5,208,022	+		GFF5211	0.68	-0.4
5,208,022	+		GFF5211	0.68	+1.3
5,208,030	-		GFF5211	0.68	+0.2
5,208,040	+		GFF5211	0.69	-1.3
5,208,048	-		GFF5211	0.69	-0.2
5,208,050	+		GFF5211	0.69	-0.2
5,208,050	+		GFF5211	0.69	+0.4
5,208,050	+		GFF5211	0.69	+0.3
5,208,050	+		GFF5211	0.69	-1.3
5,208,050	+		GFF5211	0.69	+1.5
5,208,050	+		GFF5211	0.69	+0.4
5,208,050	+		GFF5211	0.69	+0.4
5,208,058	-		GFF5211	0.70	+2.7
5,208,058	-		GFF5211	0.70	-0.1
5,208,058	-		GFF5211	0.70	+0.8
5,208,058	-		GFF5211	0.70	+1.9
5,208,058	-		GFF5211	0.70	-0.4
5,208,103	+		GFF5211	0.73	+0.2
5,208,133	-		GFF5211	0.75	-0.3
5,208,133	-		GFF5211	0.75	+0.9
5,208,133	-		GFF5211	0.75	-0.0
5,208,133	-		GFF5211	0.75	+0.6
5,208,134	+		GFF5211	0.75	+0.4
5,208,149	+		GFF5211	0.76	+0.1
5,208,149	+		GFF5211	0.76	+0.3
5,208,149	+		GFF5211	0.76	+0.2
5,208,157	-		GFF5211	0.77	+0.3
5,208,157	-		GFF5211	0.77	-1.2
5,208,172	-		GFF5211	0.78	+0.8
5,208,349	+				-0.6
5,208,354	-				+1.7
5,208,363	+				-0.2
5,208,442	-				-0.0
5,208,460	+				+1.3
5,208,460	+				-0.4
5,208,468	-				-1.0
5,208,468	-				+0.8
5,208,478	-				-0.3
5,208,496	-				-0.2
5,208,550	+				-0.2
5,208,550	+				+0.4
5,208,556	-				+0.2
5,208,560	+				+1.2
5,208,593	+				-0.7
5,208,606	+		GFF5212	0.11	+0.9
5,208,637	-		GFF5212	0.13	-0.4
5,208,637	-		GFF5212	0.13	-0.2
5,208,637	-		GFF5212	0.13	+0.4
5,208,637	-		GFF5212	0.13	+1.7
5,208,648	-		GFF5212	0.14	+1.2
5,208,695	-		GFF5212	0.18	+0.3
5,208,717	-		GFF5212	0.20	+0.8
5,208,733	-		GFF5212	0.21	-0.4
5,208,748	-		GFF5212	0.23	+1.3
5,208,748	-		GFF5212	0.23	-0.8
5,208,765	-		GFF5212	0.24	+1.7
5,208,804	+		GFF5212	0.27	-0.7
5,208,813	-		GFF5212	0.28	+0.9
5,208,825	+		GFF5212	0.29	-0.2
5,208,833	-		GFF5212	0.30	-0.7
5,208,881	+		GFF5212	0.34	+1.4
5,208,881	+		GFF5212	0.34	+0.3
5,209,072	+		GFF5212	0.50	+0.2
5,209,086	-		GFF5212	0.51	+1.2
5,209,189	+		GFF5212	0.60	+0.9
5,209,219	-		GFF5212	0.62	-0.5
5,209,224	+		GFF5212	0.63	-0.1
5,209,239	+		GFF5212	0.64	+0.8
5,209,245	+		GFF5212	0.64	+1.0
5,209,262	+		GFF5212	0.66	+0.0
5,209,264	+		GFF5212	0.66	+1.2
5,209,275	+		GFF5212	0.67	+0.0
5,209,283	-		GFF5212	0.68	-0.5
5,209,294	-		GFF5212	0.69	+0.3
5,209,377	-		GFF5212	0.75	+1.2
5,209,429	+		GFF5212	0.80	+0.3
5,209,443	+		GFF5212	0.81	+0.5
5,209,482	-		GFF5212	0.84	+1.3