Strain Fitness in Sphingobium sp. HT1-2 around GFF5185

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,176,247	+		GFF5182	0.78	-0.0
5,176,274	+		GFF5182	0.85	-2.7
5,176,274	+		GFF5182	0.85	+0.8
5,176,282	-		GFF5182	0.87	-2.7
5,176,282	-		GFF5182	0.87	-2.7
5,176,282	-		GFF5182	0.87	+0.1
5,176,309	-				-0.5
5,176,352	-				+0.0
5,176,733	+				+0.7
5,176,760	+				-0.7
5,176,791	-		GFF5184	0.19	-0.7
5,176,793	+		GFF5184	0.20	-2.4
5,176,816	+		GFF5184	0.29	+1.3
5,176,816	+		GFF5184	0.29	-2.2
5,176,816	+		GFF5184	0.29	+0.1
5,176,816	+		GFF5184	0.29	-0.0
5,176,816	+		GFF5184	0.29	+0.0
5,176,816	+		GFF5184	0.29	+0.6
5,176,816	+		GFF5184	0.29	+0.8
5,176,816	+		GFF5184	0.29	+1.2
5,176,816	+		GFF5184	0.29	-0.4
5,176,816	+		GFF5184	0.29	+1.6
5,176,816	+		GFF5184	0.29	-0.7
5,176,816	+		GFF5184	0.29	+0.7
5,176,816	+		GFF5184	0.29	-1.9
5,176,824	-		GFF5184	0.33	+0.1
5,176,824	-		GFF5184	0.33	+1.1
5,176,824	-		GFF5184	0.33	+0.9
5,176,824	-		GFF5184	0.33	+0.8
5,176,824	-		GFF5184	0.33	-0.2
5,176,824	-		GFF5184	0.33	-1.5
5,176,824	-		GFF5184	0.33	+0.6
5,176,824	-		GFF5184	0.33	-0.6
5,176,824	-		GFF5184	0.33	-0.6
5,176,824	-		GFF5184	0.33	+0.5
5,176,824	-		GFF5184	0.33	+0.4
5,176,824	-		GFF5184	0.33	+0.5
5,176,843	+		GFF5184	0.40	-0.7
5,176,851	+		GFF5184	0.43	+0.3
5,176,851	-		GFF5184	0.43	-1.2
5,176,872	-		GFF5184	0.52	-0.2
5,176,908	+		GFF5184	0.66	-2.7
5,176,961	+		GFF5184	0.88	-1.2
5,176,973	+				+0.1
5,176,973	+				-0.8
5,176,981	-				+0.4
5,176,981	-				-1.0
5,176,981	-				-0.3
5,176,988	-				+0.4
5,176,996	-				-0.7
5,176,997	+				-1.7
5,177,011	-				-0.4
5,177,016	+				+0.4
5,177,024	-				-0.4
5,177,039	+				-0.5
5,177,044	+				+0.8
5,177,047	-				+0.4
5,177,061	-				+0.5
5,177,068	+				-0.5
5,177,076	+				+0.4
5,177,076	+				-0.6
5,177,076	+				-2.3
5,177,076	+				+1.1
5,177,076	+				-2.3
5,177,076	+				+1.0
5,177,076	+				+0.8
5,177,079	+				-0.6
5,177,084	-				-1.5
5,177,084	-				+0.3
5,177,084	-				-0.8
5,177,084	-				-1.9
5,177,084	-				-1.6
5,177,087	-				-1.0
5,177,111	+				-1.0
5,177,113	-				-0.5
5,177,120	-				-1.5
5,177,142	-				+0.1
5,177,178	+				+0.1
5,177,193	+				+0.1
5,177,220	-				-2.6
5,177,239	-				+0.1
5,177,241	-				-1.5
5,177,242	+				+0.5
5,177,249	+				-0.6
5,177,250	+				+0.4
5,177,250	-				+0.4
5,177,255	+				-0.5
5,177,255	+				-1.3
5,177,258	-				+0.1
5,177,268	-				+0.9
5,177,270	+				+0.7
5,177,270	+				-0.6
5,177,270	+				-0.4
5,177,273	-				-0.6
5,177,276	-				+1.8
5,177,278	-				+0.0
5,177,278	-				-1.5
5,177,289	+				-1.4
5,177,308	+				+0.5
5,177,371	+				-0.3
5,177,373	+				-1.3
5,177,381	-				-1.1
5,177,383	+				+0.3
5,177,422	+				-0.2
5,177,426	-				+0.1
5,177,436	-				+0.6
5,177,442	+		GFF5185	0.10	-1.4
5,177,443	-		GFF5185	0.10	+0.2
5,177,478	-		GFF5185	0.12	+0.2
5,177,491	+		GFF5185	0.13	-0.2
5,177,499	-		GFF5185	0.13	-0.8
5,177,510	-		GFF5185	0.14	-0.5
5,177,532	+		GFF5185	0.15	-0.5
5,177,544	+		GFF5185	0.15	+0.2
5,177,549	+		GFF5185	0.16	-0.0
5,177,549	+		GFF5185	0.16	-1.0
5,177,550	+		GFF5185	0.16	-0.6
5,177,550	+		GFF5185	0.16	-0.6
5,177,550	+		GFF5185	0.16	-0.9
5,177,550	+		GFF5185	0.16	+0.0
5,177,552	+		GFF5185	0.16	+1.3
5,177,558	-		GFF5185	0.16	-2.0
5,177,610	+		GFF5185	0.19	+1.4
5,177,616	-		GFF5185	0.19	-0.0
5,177,631	-		GFF5185	0.20	+0.2
5,177,632	-		GFF5185	0.20	-0.5
5,177,634	+		GFF5185	0.20	+1.1
5,177,666	-		GFF5185	0.22	-1.0
5,177,671	+		GFF5185	0.22	-1.5
5,177,690	+		GFF5185	0.23	+1.0
5,177,698	-		GFF5185	0.23	+0.6
5,177,698	-		GFF5185	0.23	-0.2
5,177,709	+		GFF5185	0.24	+0.6
5,177,712	-		GFF5185	0.24	-0.6
5,177,750	+		GFF5185	0.26	-1.5
5,177,751	-		GFF5185	0.26	+0.4
5,177,755	+		GFF5185	0.26	-0.0
5,177,758	-		GFF5185	0.26	-0.1
5,177,765	+		GFF5185	0.27	+1.5
5,177,765	+		GFF5185	0.27	+0.7
5,177,765	+		GFF5185	0.27	-2.2
5,177,765	+		GFF5185	0.27	+0.2
5,177,765	+		GFF5185	0.27	-0.9
5,177,766	+		GFF5185	0.27	-0.3
5,177,766	+		GFF5185	0.27	-0.4
5,177,770	+		GFF5185	0.27	-1.0
5,177,773	-		GFF5185	0.27	+0.4
5,177,773	-		GFF5185	0.27	-0.8
5,177,799	+		GFF5185	0.28	-1.0
5,177,809	+		GFF5185	0.29	-0.9
5,177,809	+		GFF5185	0.29	+0.4
5,177,809	+		GFF5185	0.29	-0.7
5,177,809	+		GFF5185	0.29	+0.8
5,177,809	+		GFF5185	0.29	-1.1
5,177,817	-		GFF5185	0.29	-0.7
5,177,817	-		GFF5185	0.29	+0.4
5,177,817	-		GFF5185	0.29	-0.1
5,177,817	-		GFF5185	0.29	+0.7
5,177,817	-		GFF5185	0.29	-1.6
5,177,817	-		GFF5185	0.29	+0.0
5,177,817	-		GFF5185	0.29	-0.4
5,177,817	-		GFF5185	0.29	+0.5
5,177,823	+		GFF5185	0.30	-0.0
5,177,828	+		GFF5185	0.30	+0.0
5,177,828	+		GFF5185	0.30	+0.7
5,177,831	-		GFF5185	0.30	-0.8
5,177,831	-		GFF5185	0.30	+0.1
5,177,832	+		GFF5185	0.30	-0.6
5,177,833	+		GFF5185	0.30	+0.1
5,177,836	-		GFF5185	0.30	-2.0
5,177,836	-		GFF5185	0.30	+0.3
5,177,836	-		GFF5185	0.30	-2.1
5,177,838	+		GFF5185	0.30	-0.4
5,177,838	+		GFF5185	0.30	+0.0
5,177,846	-		GFF5185	0.31	-0.4
5,177,851	+		GFF5185	0.31	-0.4
5,177,859	-		GFF5185	0.31	-0.1
5,177,859	-		GFF5185	0.31	-0.1
5,177,908	+		GFF5185	0.34	-1.5
5,177,952	+		GFF5185	0.36	-1.1
5,177,994	+		GFF5185	0.38	-0.9
5,177,994	+		GFF5185	0.38	-0.3
5,178,000	+		GFF5185	0.39	-1.2
5,178,000	+		GFF5185	0.39	+0.7
5,178,066	+		GFF5185	0.42	-0.6
5,178,072	+		GFF5185	0.42	+0.1
5,178,072	+		GFF5185	0.42	+0.9
5,178,072	+		GFF5185	0.42	+1.1
5,178,078	+		GFF5185	0.43	-0.8
5,178,080	-		GFF5185	0.43	+0.8
5,178,086	-		GFF5185	0.43	+0.8
5,178,099	-		GFF5185	0.44	+0.0
5,178,103	+		GFF5185	0.44	-0.6
5,178,111	+		GFF5185	0.44	+1.0
5,178,113	+		GFF5185	0.44	-0.4
5,178,119	-		GFF5185	0.45	+0.5
5,178,126	+		GFF5185	0.45	-0.6
5,178,126	+		GFF5185	0.45	-1.6
5,178,134	-		GFF5185	0.45	+0.0
5,178,137	+		GFF5185	0.45	+0.3
5,178,145	-		GFF5185	0.46	+0.2
5,178,171	+		GFF5185	0.47	-0.6
5,178,180	-		GFF5185	0.48	-0.8
5,178,180	-		GFF5185	0.48	-1.0
5,178,186	+		GFF5185	0.48	+0.5
5,178,199	-		GFF5185	0.49	+0.1
5,178,239	+		GFF5185	0.51	-2.2
5,178,248	-		GFF5185	0.51	-0.3
5,178,277	+		GFF5185	0.53	-1.3
5,178,285	+		GFF5185	0.53	-0.1
5,178,293	+		GFF5185	0.53	-0.0
5,178,306	+		GFF5185	0.54	-0.3
5,178,311	-		GFF5185	0.54	-1.0
5,178,339	-		GFF5185	0.56	+0.3
5,178,354	+		GFF5185	0.56	+0.1
5,178,354	+		GFF5185	0.56	+1.0
5,178,362	-		GFF5185	0.57	-0.0
5,178,382	+		GFF5185	0.58	-0.3
5,178,390	-		GFF5185	0.58	-2.1
5,178,392	-		GFF5185	0.58	-0.6
5,178,423	+		GFF5185	0.60	-0.7
5,178,451	-		GFF5185	0.61	+0.6
5,178,458	+		GFF5185	0.62	-0.8
5,178,468	-		GFF5185	0.62	-1.6
5,178,476	+		GFF5185	0.63	-0.2
5,178,476	+		GFF5185	0.63	+0.2
5,178,524	-		GFF5185	0.65	-1.6
5,178,533	+		GFF5185	0.66	-0.3
5,178,543	+		GFF5185	0.66	-0.8
5,178,548	+		GFF5185	0.66	+0.8
5,178,551	-		GFF5185	0.66	-1.3
5,178,556	-		GFF5185	0.67	-0.7
5,178,600	+		GFF5185	0.69	+1.2
5,178,615	+		GFF5185	0.70	-0.1
5,178,643	+		GFF5185	0.71	+0.8
5,178,700	+		GFF5185	0.74	+1.7
5,178,723	+		GFF5185	0.75	+0.5
5,178,792	-		GFF5185	0.79	-2.3
5,178,792	-		GFF5185	0.79	-1.5
5,178,812	-		GFF5185	0.80	-3.3
5,178,819	+		GFF5185	0.80	-0.5
5,178,822	-		GFF5185	0.80	+0.7
5,178,831	+		GFF5185	0.81	-1.6
5,178,886	+		GFF5185	0.83	+0.4
5,178,886	+		GFF5185	0.83	+0.1
5,178,888	+		GFF5185	0.84	+0.3
5,178,921	-		GFF5185	0.85	-2.0
5,178,923	-		GFF5185	0.85	-1.9
5,178,925	+		GFF5185	0.85	+0.8
5,178,930	+		GFF5185	0.86	-0.7
5,178,938	-		GFF5185	0.86	-1.9
5,178,938	-		GFF5185	0.86	+0.1
5,178,938	-		GFF5185	0.86	+1.0
5,178,943	+		GFF5185	0.86	-0.4
5,178,948	+		GFF5185	0.87	-1.3
5,178,989	+		GFF5185	0.89	-0.6
5,178,989	+		GFF5185	0.89	+0.1
5,178,989	+		GFF5185	0.89	-1.7
5,178,989	+		GFF5185	0.89	+0.6
5,178,989	+		GFF5185	0.89	-0.7
5,178,989	+		GFF5185	0.89	-0.7
5,178,989	+		GFF5185	0.89	+1.0
5,178,991	+		GFF5185	0.89	-0.2
5,178,997	-		GFF5185	0.89	-2.1
5,178,997	-		GFF5185	0.89	+1.5
5,178,997	-		GFF5185	0.89	-0.5
5,178,997	-		GFF5185	0.89	-0.1
5,178,997	-		GFF5185	0.89	+0.1
5,178,997	-		GFF5185	0.89	-0.6
5,178,997	-		GFF5185	0.89	-1.5
5,178,997	-		GFF5185	0.89	+0.1
5,179,013	+		GFF5185	0.90	+0.4
5,179,013	+		GFF5185	0.90	-0.7
5,179,013	+		GFF5185	0.90	+0.8
5,179,020	-				-0.0
5,179,021	-				+0.6
5,179,021	-				+0.4
5,179,040	-				-1.7
5,179,051	-				+0.5
5,179,064	+				+0.5
5,179,069	-				-0.0
5,179,080	+				+0.8
5,179,080	+				-0.0
5,179,084	+				-2.5
5,179,087	+				-0.6
5,179,088	-				-0.6
5,179,093	+				+1.2
5,179,103	+				+0.4
5,179,103	+				+0.1
5,179,111	-				+0.1
5,179,111	-				+0.5
5,179,111	-				-0.5
5,179,113	+				-1.5
5,179,113	+				+1.1
5,179,113	+				+0.7
5,179,113	+				-0.1
5,179,113	+				-2.8
5,179,113	+				+0.2
5,179,113	-				-0.1
5,179,119	-				+1.0
5,179,122	+				+0.1
5,179,127	+				-0.6
5,179,127	+				-0.4
5,179,130	-				+0.4
5,179,130	-				-0.6
5,179,130	-				-0.0
5,179,132	+				-2.6
5,179,132	+				-0.5
5,179,132	+				-0.0
5,179,132	+				+0.4
5,179,132	+				-2.4
5,179,140	-				+0.4
5,179,140	-				-0.6
5,179,140	-				-1.5
5,179,140	-				-0.4
5,179,140	-				+0.6
5,179,143	+				+0.7
5,179,151	-				-0.7
5,179,196	-				+0.3
5,179,231	+				-0.5
5,179,234	-				+1.7
5,179,236	+				-0.4
5,179,236	+				-0.5
5,179,236	+				-0.5
5,179,243	+				-2.3
5,179,244	-				-0.6
5,179,244	-				+0.8
5,179,244	-				+0.1
5,179,244	-				+0.0
5,179,273	-				+0.0
5,179,279	+				+0.8
5,179,292	-				-1.2
5,179,293	+				-1.5
5,179,331	-				-0.3
5,179,336	+				-1.6
5,179,352	+				-2.3
5,179,360	-				-0.6
5,179,395	-				+0.4
5,179,403	+				+0.1
5,179,403	+				-1.0
5,179,420	+				-0.1
5,179,459	-				-1.4
5,179,499	+		GFF5186	0.19	-0.0
5,179,499	+		GFF5186	0.19	+1.1
5,179,499	+		GFF5186	0.19	-0.7
5,179,499	+		GFF5186	0.19	-2.7
5,179,499	+		GFF5186	0.19	-0.9
5,179,499	+		GFF5186	0.19	-0.1
5,179,499	+		GFF5186	0.19	+1.0
5,179,499	+		GFF5186	0.19	+0.1
5,179,499	+		GFF5186	0.19	-0.2
5,179,499	+		GFF5186	0.19	-2.2
5,179,499	+		GFF5186	0.19	+0.3
5,179,499	+		GFF5186	0.19	+0.3
5,179,499	+		GFF5186	0.19	+0.4
5,179,499	+		GFF5186	0.19	-0.1
5,179,499	+		GFF5186	0.19	-0.0
5,179,499	+		GFF5186	0.19	-0.4
5,179,499	+		GFF5186	0.19	+0.4
5,179,507	-		GFF5186	0.21	-0.1
5,179,507	-		GFF5186	0.21	-2.1
5,179,507	-		GFF5186	0.21	+0.8
5,179,507	-		GFF5186	0.21	-0.7
5,179,507	-		GFF5186	0.21	+0.7
5,179,507	-		GFF5186	0.21	-0.0
5,179,507	-		GFF5186	0.21	-0.5
5,179,507	-		GFF5186	0.21	-0.3
5,179,507	-		GFF5186	0.21	-0.6
5,179,507	-		GFF5186	0.21	-2.2
5,179,507	-		GFF5186	0.21	-1.0
5,179,507	-		GFF5186	0.21	+0.1
5,179,507	-		GFF5186	0.21	+0.4
5,179,507	-		GFF5186	0.21	-0.7
5,179,507	-		GFF5186	0.21	-0.7
5,179,507	-		GFF5186	0.21	-1.7
5,179,507	-		GFF5186	0.21	-1.1
5,179,507	-		GFF5186	0.21	-1.0
5,179,507	-		GFF5186	0.21	-0.0
5,179,507	-		GFF5186	0.21	+1.1
5,179,507	-		GFF5186	0.21	+0.1
5,179,508	-		GFF5186	0.21	-0.7
5,179,509	+		GFF5186	0.21	+0.6
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5,179,517	-		GFF5186	0.23	-1.2
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5,179,527	-		GFF5186	0.25	-1.7
5,179,564	-		GFF5186	0.34	+1.3
5,179,571	-		GFF5186	0.36	-0.4
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5,179,573	+		GFF5186	0.36	-0.5
5,179,581	-		GFF5186	0.38	-2.2
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5,179,618	+		GFF5186	0.47	-1.7
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5,179,667	+		GFF5186	0.59	+0.4
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5,179,851	+				-0.4
5,179,856	+				-1.4
5,179,856	+				+0.1
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5,179,880	+				+0.3
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5,179,890	+				+0.3
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5,179,924	+				+0.1
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5,179,932	-				-1.1
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5,179,974	+				-0.2
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5,180,030	+				+0.4
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5,180,042	+				-0.8
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5,180,043	-				-1.0
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5,180,050	-				-1.2
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5,180,059	-				-1.5
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5,180,116	-				-0.0
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5,180,136	+				-0.0
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5,180,163	+		GFF5187	0.11	-2.4
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5,180,163	+		GFF5187	0.11	-0.3
5,180,163	+		GFF5187	0.11	-2.9
5,180,163	+		GFF5187	0.11	+0.4
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