Strain Fitness in Sphingobium sp. HT1-2 around GFF5168

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,158,597	+				-1.0
5,158,603	-				-2.2
5,158,605	-				-1.2
5,158,605	-				-0.8
5,158,607	+				+0.5
5,158,608	+				-0.8
5,158,633	+				-0.1
5,158,641	-				+0.5
5,158,653	-				-0.7
5,158,672	+				+0.9
5,158,672	+				-2.3
5,158,703	+				+0.3
5,158,711	-				+0.0
5,158,715	+				-1.8
5,158,716	+				-0.6
5,158,716	+				+0.6
5,158,716	+				-2.6
5,158,716	-				-2.1
5,158,716	-				-1.4
5,158,721	-				-0.3
5,158,724	-				-0.0
5,158,733	+				-1.7
5,158,741	-				-1.0
5,158,741	-				-1.9
5,158,750	+				-0.4
5,158,755	+				-0.2
5,158,755	+				-1.5
5,158,755	+				-1.2
5,158,755	+				-1.6
5,158,758	-				-0.5
5,158,760	+				-0.0
5,158,763	-				-0.4
5,158,763	-				-2.0
5,158,763	-				+1.1
5,158,763	-				-2.1
5,158,763	-				+0.5
5,158,763	-				-0.8
5,158,768	+				-0.9
5,158,768	-				-1.4
5,158,776	-				+0.7
5,158,776	-				+0.2
5,158,795	-				+0.9
5,158,797	-				+0.7
5,158,856	+		GFF5167	0.12	-2.2
5,158,866	+		GFF5167	0.13	-0.5
5,158,866	+		GFF5167	0.13	+1.3
5,158,866	+		GFF5167	0.13	-2.2
5,158,869	+		GFF5167	0.13	-1.8
5,158,871	+		GFF5167	0.14	-1.7
5,158,871	+		GFF5167	0.14	-0.2
5,158,871	+		GFF5167	0.14	-2.3
5,158,871	+		GFF5167	0.14	-0.8
5,158,874	-		GFF5167	0.14	-1.3
5,158,874	-		GFF5167	0.14	-0.9
5,158,874	-		GFF5167	0.14	-0.6
5,158,874	-		GFF5167	0.14	+0.7
5,158,877	-		GFF5167	0.14	+0.1
5,158,879	-		GFF5167	0.15	-2.9
5,158,879	-		GFF5167	0.15	-1.7
5,158,879	-		GFF5167	0.15	-0.1
5,158,880	+		GFF5167	0.15	-2.8
5,158,908	+		GFF5167	0.18	-0.3
5,158,919	+		GFF5167	0.20	+0.7
5,158,926	+		GFF5167	0.21	-2.8
5,158,928	+		GFF5167	0.21	+0.7
5,158,928	+		GFF5167	0.21	-1.4
5,158,928	+		GFF5167	0.21	-0.2
5,158,928	+		GFF5167	0.21	-2.3
5,158,928	+		GFF5167	0.21	-0.5
5,158,928	+		GFF5167	0.21	-2.2
5,158,928	+		GFF5167	0.21	+0.2
5,158,934	-		GFF5167	0.22	-0.7
5,158,936	-		GFF5167	0.22	+0.2
5,158,936	-		GFF5167	0.22	+0.7
5,158,936	-		GFF5167	0.22	-1.4
5,158,936	-		GFF5167	0.22	-0.5
5,158,936	-		GFF5167	0.22	-0.2
5,158,936	-		GFF5167	0.22	+0.5
5,158,936	-		GFF5167	0.22	+0.5
5,158,936	-		GFF5167	0.22	-0.6
5,158,936	-		GFF5167	0.22	-1.0
5,158,936	-		GFF5167	0.22	+0.4
5,158,936	-		GFF5167	0.22	-1.5
5,158,941	-		GFF5167	0.23	+0.3
5,158,942	-		GFF5167	0.23	-0.2
5,158,984	+		GFF5167	0.28	-1.4
5,158,984	+		GFF5167	0.28	+0.1
5,158,984	+		GFF5167	0.28	-0.2
5,158,984	+		GFF5167	0.28	-0.2
5,158,984	+		GFF5167	0.28	-0.7
5,158,984	+		GFF5167	0.28	-2.5
5,158,984	+		GFF5167	0.28	-0.6
5,158,984	+		GFF5167	0.28	+0.1
5,158,984	+		GFF5167	0.28	+0.4
5,158,992	-		GFF5167	0.29	-0.5
5,158,992	-		GFF5167	0.29	-0.4
5,158,992	-		GFF5167	0.29	-1.8
5,158,992	-		GFF5167	0.29	-0.1
5,158,992	-		GFF5167	0.29	-0.8
5,158,992	-		GFF5167	0.29	-0.5
5,158,997	-		GFF5167	0.30	+0.8
5,159,019	+		GFF5167	0.33	+0.5
5,159,019	-		GFF5167	0.33	-0.1
5,159,019	-		GFF5167	0.33	+1.2
5,159,019	-		GFF5167	0.33	-0.1
5,159,027	-		GFF5167	0.34	+0.7
5,159,027	-		GFF5167	0.34	-0.4
5,159,068	+		GFF5167	0.39	-2.0
5,159,081	+		GFF5167	0.41	-1.0
5,159,081	+		GFF5167	0.41	-1.6
5,159,081	+		GFF5167	0.41	-0.6
5,159,084	-		GFF5167	0.41	-0.5
5,159,084	-		GFF5167	0.41	+0.6
5,159,087	-		GFF5167	0.41	-0.0
5,159,089	-		GFF5167	0.42	+1.1
5,159,089	-		GFF5167	0.42	+0.9
5,159,089	-		GFF5167	0.42	-0.0
5,159,089	-		GFF5167	0.42	+0.0
5,159,094	-		GFF5167	0.42	-0.1
5,159,113	-		GFF5167	0.45	-0.4
5,159,113	-		GFF5167	0.45	-1.3
5,159,129	+		GFF5167	0.47	+0.6
5,159,129	+		GFF5167	0.47	+0.3
5,159,131	-		GFF5167	0.47	-1.0
5,159,136	-		GFF5167	0.48	-0.2
5,159,142	+		GFF5167	0.49	+0.2
5,159,142	+		GFF5167	0.49	-2.3
5,159,174	+		GFF5167	0.53	-0.1
5,159,187	+		GFF5167	0.54	-0.5
5,159,188	+		GFF5167	0.55	-1.2
5,159,196	-		GFF5167	0.56	-1.6
5,159,196	-		GFF5167	0.56	-0.1
5,159,196	-		GFF5167	0.56	-0.9
5,159,196	-		GFF5167	0.56	-3.2
5,159,196	-		GFF5167	0.56	+1.1
5,159,203	+		GFF5167	0.56	-2.8
5,159,203	+		GFF5167	0.56	-1.6
5,159,203	-		GFF5167	0.56	-2.1
5,159,211	-		GFF5167	0.57	-2.3
5,159,211	-		GFF5167	0.57	-0.9
5,159,246	-		GFF5167	0.62	+0.3
5,159,266	+		GFF5167	0.65	-0.5
5,159,276	-		GFF5167	0.66	-1.7
5,159,276	-		GFF5167	0.66	-0.9
5,159,293	+		GFF5167	0.68	-0.5
5,159,298	+		GFF5167	0.69	-0.1
5,159,298	+		GFF5167	0.69	+0.9
5,159,301	-		GFF5167	0.69	-1.0
5,159,306	-		GFF5167	0.70	-1.1
5,159,306	-		GFF5167	0.70	-0.5
5,159,306	-		GFF5167	0.70	-2.5
5,159,309	+		GFF5167	0.70	+0.1
5,159,321	+		GFF5167	0.72	-3.1
5,159,343	+		GFF5167	0.75	-0.6
5,159,351	-		GFF5167	0.76	-1.5
5,159,357	+		GFF5167	0.76	-0.5
5,159,357	+		GFF5167	0.76	-1.4
5,159,375	-		GFF5167	0.79	-0.8
5,159,375	-		GFF5167	0.79	-0.5
5,159,375	-		GFF5167	0.79	-1.6
5,159,375	-		GFF5167	0.79	-0.8
5,159,378	+		GFF5167	0.79	-1.1
5,159,378	+		GFF5167	0.79	+0.7
5,159,384	+		GFF5167	0.80	-0.1
5,159,384	+		GFF5167	0.80	-0.6
5,159,386	-		GFF5167	0.80	-0.6
5,159,386	-		GFF5167	0.80	+1.1
5,159,386	-		GFF5167	0.80	+0.4
5,159,392	-		GFF5167	0.81	-0.0
5,159,394	+		GFF5167	0.81	-1.2
5,159,397	-		GFF5167	0.82	-0.2
5,159,397	-		GFF5167	0.82	-1.6
5,159,402	-		GFF5167	0.82	-0.0
5,159,432	-		GFF5167	0.86	-0.6
5,159,432	-		GFF5167	0.86	-1.1
5,159,444	+		GFF5167	0.88	+0.2
5,159,464	+				-1.8
5,159,465	+				+1.6
5,159,465	+				-0.6
5,159,473	-				-0.7
5,159,474	+				+0.5
5,159,475	+				+0.2
5,159,482	-				-1.0
5,159,491	-				-0.6
5,159,510	+				-0.6
5,159,534	+				-0.5
5,159,579	-				+0.7
5,159,581	+				-1.8
5,159,589	-				+0.5
5,159,589	-				-1.8
5,159,589	-				-1.7
5,159,624	+				-1.2
5,159,668	-		GFF5168	0.11	-1.8
5,159,675	-		GFF5168	0.12	-0.4
5,159,695	+		GFF5168	0.14	-0.9
5,159,702	-		GFF5168	0.15	-0.2
5,159,703	-		GFF5168	0.16	-1.5
5,159,736	-		GFF5168	0.20	-2.6
5,159,770	-		GFF5168	0.25	+0.9
5,159,805	+		GFF5168	0.31	-1.9
5,159,805	+		GFF5168	0.31	-1.5
5,159,805	+		GFF5168	0.31	-0.4
5,159,805	+		GFF5168	0.31	-0.8
5,159,805	+		GFF5168	0.31	-0.4
5,159,805	+		GFF5168	0.31	-0.1
5,159,805	+		GFF5168	0.31	-0.9
5,159,805	+		GFF5168	0.31	-1.2
5,159,805	+		GFF5168	0.31	-1.3
5,159,805	+		GFF5168	0.31	-0.1
5,159,805	+		GFF5168	0.31	-1.4
5,159,805	+		GFF5168	0.31	-0.6
5,159,805	+		GFF5168	0.31	-1.1
5,159,805	+		GFF5168	0.31	-0.6
5,159,805	+		GFF5168	0.31	-0.4
5,159,805	+		GFF5168	0.31	+0.1
5,159,805	+		GFF5168	0.31	-0.6
5,159,812	+		GFF5168	0.32	-2.5
5,159,813	-		GFF5168	0.32	+0.4
5,159,813	-		GFF5168	0.32	-0.1
5,159,813	-		GFF5168	0.32	-0.2
5,159,813	-		GFF5168	0.32	-0.4
5,159,813	-		GFF5168	0.32	+0.1
5,159,813	-		GFF5168	0.32	-0.2
5,159,813	-		GFF5168	0.32	-1.1
5,159,813	-		GFF5168	0.32	-0.0
5,159,813	-		GFF5168	0.32	+0.8
5,159,813	-		GFF5168	0.32	-2.0
5,159,813	-		GFF5168	0.32	-0.5
5,159,813	-		GFF5168	0.32	+0.2
5,159,813	-		GFF5168	0.32	+0.9
5,159,813	-		GFF5168	0.32	+0.4
5,159,813	-		GFF5168	0.32	-0.2
5,159,813	-		GFF5168	0.32	+0.2
5,159,813	-		GFF5168	0.32	-1.7
5,159,813	-		GFF5168	0.32	-0.2
5,159,813	-		GFF5168	0.32	-0.7
5,159,813	-		GFF5168	0.32	-0.1
5,159,813	-		GFF5168	0.32	+1.3
5,159,813	-		GFF5168	0.32	+0.2
5,159,813	-		GFF5168	0.32	-1.2
5,159,817	+		GFF5168	0.32	-0.7
5,159,817	+		GFF5168	0.32	+0.4
5,159,817	+		GFF5168	0.32	+0.6
5,159,817	+		GFF5168	0.32	-0.4
5,159,817	+		GFF5168	0.32	-1.6
5,159,825	-		GFF5168	0.33	-2.2
5,159,825	-		GFF5168	0.33	+0.6
5,159,825	-		GFF5168	0.33	+0.1
5,159,825	-		GFF5168	0.33	+0.2
5,159,825	-		GFF5168	0.33	-1.2
5,159,849	+		GFF5168	0.37	-0.3
5,159,857	-		GFF5168	0.38	-0.7
5,159,907	+		GFF5168	0.45	-1.6
5,159,907	+		GFF5168	0.45	-0.9
5,159,907	+		GFF5168	0.45	-1.2
5,159,943	+		GFF5168	0.51	-0.3
5,159,959	+		GFF5168	0.53	-0.4
5,159,964	+		GFF5168	0.54	-0.6
5,159,964	+		GFF5168	0.54	-0.5
5,159,972	-		GFF5168	0.55	-1.3
5,160,018	+		GFF5168	0.62	+0.1
5,160,027	+		GFF5168	0.63	-1.6
5,160,027	+		GFF5168	0.63	-0.2
5,160,027	+		GFF5168	0.63	-1.0
5,160,028	+		GFF5168	0.63	+0.2
5,160,028	+		GFF5168	0.63	+0.0
5,160,028	+		GFF5168	0.63	-0.3
5,160,028	+		GFF5168	0.63	-0.4
5,160,028	+		GFF5168	0.63	-0.3
5,160,035	-		GFF5168	0.64	-0.5
5,160,035	-		GFF5168	0.64	-1.4
5,160,035	-		GFF5168	0.64	-0.4
5,160,036	-		GFF5168	0.64	+0.6
5,160,036	-		GFF5168	0.64	-1.7
5,160,040	-		GFF5168	0.65	-0.7
5,160,045	-		GFF5168	0.66	-3.0
5,160,045	-		GFF5168	0.66	-0.5
5,160,060	+		GFF5168	0.68	-0.8
5,160,060	+		GFF5168	0.68	-2.0
5,160,067	+		GFF5168	0.69	+0.3
5,160,067	+		GFF5168	0.69	-1.5
5,160,068	-		GFF5168	0.69	-0.6
5,160,069	-		GFF5168	0.69	+0.0
5,160,069	-		GFF5168	0.69	-0.2
5,160,075	-		GFF5168	0.70	+0.0
5,160,097	+		GFF5168	0.73	-2.2
5,160,121	-		GFF5168	0.77	-2.4
5,160,133	+		GFF5168	0.79	-1.9
5,160,133	+		GFF5168	0.79	-1.1
5,160,141	-		GFF5168	0.80	+0.7
5,160,141	-		GFF5168	0.80	-1.5
5,160,197	-		GFF5168	0.88	+0.3
5,160,201	+		GFF5168	0.88	-0.3
5,160,201	-		GFF5168	0.88	+0.7
5,160,204	-		GFF5168	0.89	-0.8
5,160,204	-		GFF5168	0.89	+0.0
5,160,217	+				-1.0
5,160,217	+				-0.7
5,160,225	-				-0.6
5,160,225	-				+0.4
5,160,225	-				-1.1
5,160,225	-				-1.4
5,160,225	-				-2.3
5,160,225	-				-0.6
5,160,232	+				-1.1
5,160,232	+				-1.6
5,160,232	+				-1.1
5,160,232	+				+0.2
5,160,232	+				+0.5
5,160,232	+				-1.7
5,160,232	+				-1.8
5,160,232	+				-0.3
5,160,232	+				+0.4
5,160,232	+				-2.2
5,160,232	+				-1.6
5,160,232	+				-1.6
5,160,232	+				+0.1
5,160,232	+				+1.5
5,160,232	+				-0.2
5,160,232	+				+0.8
5,160,235	-				-0.1
5,160,240	-				+0.2
5,160,240	-				-2.4
5,160,240	-				-2.0
5,160,240	-				-0.4
5,160,240	-				-0.6
5,160,240	-				-1.4
5,160,240	-				+0.3
5,160,240	-				-0.7
5,160,240	-				+0.7
5,160,240	-				-0.8
5,160,240	-				+1.1
5,160,247	-				-1.8
5,160,283	+				-1.4
5,160,308	-				-0.9
5,160,312	+				+1.3
5,160,312	+				-1.1
5,160,327	+				-1.8
5,160,335	-				+0.1
5,160,335	-				-0.4
5,160,336	+				-3.0
5,160,377	+				-0.9
5,160,384	+				+0.4
5,160,385	-				-1.0
5,160,389	+				-1.2
5,160,391	+				+0.2
5,160,397	-				-1.8
5,160,399	-				+1.6
5,160,399	-				-1.2
5,160,405	+		GFF5169	0.10	+0.4
5,160,419	-		GFF5169	0.11	-1.0
5,160,425	+		GFF5169	0.12	-0.4
5,160,433	-		GFF5169	0.13	-0.2
5,160,444	+		GFF5169	0.13	+1.3
5,160,444	+		GFF5169	0.13	-0.6
5,160,444	+		GFF5169	0.13	-1.6
5,160,453	+		GFF5169	0.14	+1.1
5,160,458	+		GFF5169	0.15	+0.3
5,160,466	-		GFF5169	0.15	+0.4
5,160,469	-		GFF5169	0.16	-1.4
5,160,477	-		GFF5169	0.16	+0.1
5,160,484	+		GFF5169	0.17	-1.4
5,160,504	+		GFF5169	0.19	+0.7
5,160,504	+		GFF5169	0.19	-2.2
5,160,512	-		GFF5169	0.19	-1.2
5,160,512	-		GFF5169	0.19	-1.1
5,160,512	-		GFF5169	0.19	-2.0
5,160,512	-		GFF5169	0.19	-0.7
5,160,532	+		GFF5169	0.21	-0.9
5,160,532	+		GFF5169	0.21	-0.2
5,160,532	+		GFF5169	0.21	-0.5
5,160,532	+		GFF5169	0.21	-1.2
5,160,540	-		GFF5169	0.22	+0.2
5,160,540	-		GFF5169	0.22	-0.4
5,160,540	-		GFF5169	0.22	-1.6
5,160,545	-		GFF5169	0.22	+0.6
5,160,565	+		GFF5169	0.24	-0.8
5,160,565	+		GFF5169	0.24	-2.3
5,160,565	+		GFF5169	0.24	-1.6
5,160,573	-		GFF5169	0.25	-0.8
5,160,573	-		GFF5169	0.25	-2.2
5,160,573	-		GFF5169	0.25	-0.1
5,160,575	-		GFF5169	0.25	-0.1
5,160,634	+		GFF5169	0.30	-0.5
5,160,634	+		GFF5169	0.30	+0.7
5,160,642	-		GFF5169	0.30	-0.2
5,160,642	-		GFF5169	0.30	-1.1
5,160,642	-		GFF5169	0.30	+0.8
5,160,644	+		GFF5169	0.31	-1.0
5,160,644	+		GFF5169	0.31	-0.7
5,160,652	-		GFF5169	0.31	+0.8
5,160,657	+		GFF5169	0.32	-2.2
5,160,657	+		GFF5169	0.32	-1.8
5,160,658	+		GFF5169	0.32	-0.7
5,160,658	+		GFF5169	0.32	+0.1
5,160,659	+		GFF5169	0.32	+1.3
5,160,659	+		GFF5169	0.32	+0.9
5,160,659	+		GFF5169	0.32	-1.1
5,160,659	+		GFF5169	0.32	+0.1
5,160,665	-		GFF5169	0.32	-0.5
5,160,667	-		GFF5169	0.33	+1.7
5,160,667	-		GFF5169	0.33	-0.4
5,160,667	-		GFF5169	0.33	+0.4
5,160,667	-		GFF5169	0.33	-1.2
5,160,683	+		GFF5169	0.34	-0.3
5,160,683	+		GFF5169	0.34	-0.7
5,160,685	+		GFF5169	0.34	-0.2
5,160,685	+		GFF5169	0.34	-1.9
5,160,690	+		GFF5169	0.35	+0.2
5,160,690	+		GFF5169	0.35	-0.2
5,160,690	+		GFF5169	0.35	-0.6
5,160,690	+		GFF5169	0.35	-0.8
5,160,690	+		GFF5169	0.35	-0.9
5,160,690	+		GFF5169	0.35	-0.3
5,160,698	-		GFF5169	0.35	-0.1
5,160,698	-		GFF5169	0.35	+0.8
5,160,698	-		GFF5169	0.35	-0.2
5,160,743	-		GFF5169	0.39	-0.6
5,160,743	-		GFF5169	0.39	-0.2
5,160,743	-		GFF5169	0.39	-0.4
5,160,758	+		GFF5169	0.40	-1.1
5,160,766	-		GFF5169	0.41	+0.4
5,160,773	+		GFF5169	0.42	-1.4
5,160,773	+		GFF5169	0.42	-0.9
5,160,781	-		GFF5169	0.42	+0.0
5,160,781	-		GFF5169	0.42	+0.2
5,160,788	+		GFF5169	0.43	-0.7
5,160,834	-		GFF5169	0.47	-0.9
5,160,852	+		GFF5169	0.49	-0.1
5,160,852	+		GFF5169	0.49	+0.6
5,160,895	-		GFF5169	0.52	-0.1
5,160,909	+		GFF5169	0.53	-1.4
5,160,917	-		GFF5169	0.54	-0.2
5,160,917	-		GFF5169	0.54	-0.7
5,160,933	+		GFF5169	0.55	+0.6
5,160,941	-		GFF5169	0.56	+0.2
5,160,993	-		GFF5169	0.61	-1.3
5,160,996	-		GFF5169	0.61	+0.0
5,161,030	-		GFF5169	0.64	-2.0
5,161,030	-		GFF5169	0.64	-0.8
5,161,031	-		GFF5169	0.64	-0.5
5,161,057	-		GFF5169	0.66	-0.5
5,161,135	+		GFF5169	0.73	+0.1
5,161,135	+		GFF5169	0.73	+0.2
5,161,135	-		GFF5169	0.73	-1.4
5,161,140	+		GFF5169	0.73	-0.7
5,161,143	-		GFF5169	0.74	-2.0
5,161,143	-		GFF5169	0.74	-0.8
5,161,145	+		GFF5169	0.74	+0.7
5,161,167	+		GFF5169	0.76	-1.2
5,161,175	+		GFF5169	0.76	+0.2
5,161,175	+		GFF5169	0.76	-0.3
5,161,175	+		GFF5169	0.76	-0.0
5,161,175	+		GFF5169	0.76	-1.3
5,161,175	-		GFF5169	0.76	-0.3
5,161,183	-		GFF5169	0.77	+0.6
5,161,192	+		GFF5169	0.78	-0.4
5,161,200	+		GFF5169	0.78	-0.7
5,161,210	+		GFF5169	0.79	-0.7
5,161,210	+		GFF5169	0.79	-2.0
5,161,217	-		GFF5169	0.80	-0.9
5,161,218	-		GFF5169	0.80	-0.6
5,161,225	+		GFF5169	0.81	+0.3
5,161,225	+		GFF5169	0.81	-1.7
5,161,233	-		GFF5169	0.81	-1.8
5,161,272	-		GFF5169	0.85	-0.5