Strain Fitness in Sphingobium sp. HT1-2 around GFF5071

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,066,910	+		GFF5070	0.16	-0.0
5,066,928	+		GFF5070	0.18	-0.6
5,066,935	+		GFF5070	0.19	-2.6
5,066,939	+		GFF5070	0.19	-1.8
5,066,950	+		GFF5070	0.20	+0.8
5,066,996	+		GFF5070	0.24	-0.6
5,066,996	+		GFF5070	0.24	-0.4
5,066,996	+		GFF5070	0.24	+0.9
5,067,004	-		GFF5070	0.25	-2.9
5,067,004	-		GFF5070	0.25	-0.1
5,067,006	+		GFF5070	0.25	-1.7
5,067,014	-		GFF5070	0.26	+0.3
5,067,033	+		GFF5070	0.27	-0.4
5,067,033	+		GFF5070	0.27	+0.1
5,067,043	+		GFF5070	0.28	-0.5
5,067,120	+		GFF5070	0.35	+0.6
5,067,125	-		GFF5070	0.35	-0.3
5,067,163	-		GFF5070	0.38	-0.6
5,067,174	-		GFF5070	0.39	+1.4
5,067,180	-		GFF5070	0.40	-1.5
5,067,180	-		GFF5070	0.40	+1.1
5,067,223	-		GFF5070	0.44	-1.6
5,067,230	+		GFF5070	0.44	+0.2
5,067,231	-		GFF5070	0.44	-0.1
5,067,268	+		GFF5070	0.48	+0.3
5,067,271	-		GFF5070	0.48	-0.4
5,067,278	-		GFF5070	0.48	+0.6
5,067,311	+		GFF5070	0.51	+0.4
5,067,317	-		GFF5070	0.52	-1.2
5,067,317	-		GFF5070	0.52	+1.0
5,067,320	-		GFF5070	0.52	-1.7
5,067,326	+		GFF5070	0.53	+0.4
5,067,326	+		GFF5070	0.53	+0.0
5,067,326	+		GFF5070	0.53	+0.1
5,067,326	+		GFF5070	0.53	-1.5
5,067,326	+		GFF5070	0.53	-0.2
5,067,343	+		GFF5070	0.54	-0.1
5,067,343	+		GFF5070	0.54	+0.9
5,067,343	+		GFF5070	0.54	-0.0
5,067,358	+		GFF5070	0.55	-2.2
5,067,366	-		GFF5070	0.56	+0.7
5,067,366	-		GFF5070	0.56	-1.8
5,067,366	-		GFF5070	0.56	-0.5
5,067,399	-		GFF5070	0.59	+0.6
5,067,402	+		GFF5070	0.59	+0.8
5,067,402	+		GFF5070	0.59	+0.1
5,067,410	-		GFF5070	0.60	-0.9
5,067,430	+		GFF5070	0.62	+1.1
5,067,430	+		GFF5070	0.62	-0.6
5,067,430	+		GFF5070	0.62	-0.2
5,067,430	+		GFF5070	0.62	+0.9
5,067,430	+		GFF5070	0.62	-0.3
5,067,430	+		GFF5070	0.62	-1.7
5,067,430	+		GFF5070	0.62	+0.9
5,067,430	+		GFF5070	0.62	+0.6
5,067,430	+		GFF5070	0.62	-1.3
5,067,430	+		GFF5070	0.62	+0.8
5,067,430	+		GFF5070	0.62	+1.0
5,067,430	+		GFF5070	0.62	+0.7
5,067,430	+		GFF5070	0.62	+0.4
5,067,430	+		GFF5070	0.62	-1.7
5,067,430	+		GFF5070	0.62	-2.2
5,067,430	+		GFF5070	0.62	-0.8
5,067,430	+		GFF5070	0.62	-0.8
5,067,430	+		GFF5070	0.62	+0.5
5,067,430	+		GFF5070	0.62	-0.5
5,067,430	+		GFF5070	0.62	+0.6
5,067,438	-		GFF5070	0.62	+0.5
5,067,438	-		GFF5070	0.62	+1.2
5,067,438	-		GFF5070	0.62	+0.9
5,067,438	-		GFF5070	0.62	+0.9
5,067,438	-		GFF5070	0.62	+0.6
5,067,438	-		GFF5070	0.62	-1.2
5,067,438	-		GFF5070	0.62	-1.0
5,067,438	-		GFF5070	0.62	-2.2
5,067,438	-		GFF5070	0.62	-0.5
5,067,438	-		GFF5070	0.62	-1.3
5,067,438	-		GFF5070	0.62	-0.3
5,067,438	-		GFF5070	0.62	+0.4
5,067,438	-		GFF5070	0.62	-0.1
5,067,438	-		GFF5070	0.62	-0.1
5,067,438	-		GFF5070	0.62	-0.5
5,067,438	-		GFF5070	0.62	-1.0
5,067,438	-		GFF5070	0.62	+0.4
5,067,438	-		GFF5070	0.62	+0.3
5,067,438	-		GFF5070	0.62	+0.4
5,067,438	-		GFF5070	0.62	-0.4
5,067,438	-		GFF5070	0.62	+2.0
5,067,438	-		GFF5070	0.62	+0.3
5,067,455	-		GFF5070	0.64	-0.4
5,067,474	-		GFF5070	0.66	+0.8
5,067,474	-		GFF5070	0.66	+1.4
5,067,474	-		GFF5070	0.66	+0.3
5,067,497	+		GFF5070	0.68	-0.1
5,067,498	-		GFF5070	0.68	-0.1
5,067,500	-		GFF5070	0.68	+0.1
5,067,505	-		GFF5070	0.68	-1.5
5,067,535	+		GFF5070	0.71	-1.7
5,067,560	+		GFF5070	0.73	-0.5
5,067,560	+		GFF5070	0.73	+0.3
5,067,568	-		GFF5070	0.74	-0.1
5,067,568	-		GFF5070	0.74	-0.7
5,067,577	+		GFF5070	0.74	-0.8
5,067,584	+		GFF5070	0.75	+0.1
5,067,589	+		GFF5070	0.76	-0.5
5,067,593	+		GFF5070	0.76	+0.5
5,067,593	+		GFF5070	0.76	-1.7
5,067,601	-		GFF5070	0.77	-0.2
5,067,601	-		GFF5070	0.77	-0.3
5,067,601	-		GFF5070	0.77	-1.0
5,067,608	+		GFF5070	0.77	+0.5
5,067,611	-		GFF5070	0.77	-1.7
5,067,618	-		GFF5070	0.78	-1.6
5,067,633	+		GFF5070	0.79	-0.4
5,067,635	+		GFF5070	0.80	-0.5
5,067,635	+		GFF5070	0.80	+0.1
5,067,635	+		GFF5070	0.80	+0.4
5,067,635	+		GFF5070	0.80	-0.5
5,067,641	-		GFF5070	0.80	-0.9
5,067,641	-		GFF5070	0.80	+1.6
5,067,643	-		GFF5070	0.80	-0.6
5,067,643	-		GFF5070	0.80	-1.3
5,067,646	-		GFF5070	0.81	-0.0
5,067,647	+		GFF5070	0.81	+1.6
5,067,665	+		GFF5070	0.82	-2.3
5,067,665	+		GFF5070	0.82	+1.1
5,067,665	+		GFF5070	0.82	+1.1
5,067,666	+		GFF5070	0.82	+0.7
5,067,666	+		GFF5070	0.82	+1.1
5,067,681	+		GFF5070	0.84	+0.1
5,067,694	+		GFF5070	0.85	-0.9
5,067,696	+		GFF5070	0.85	+0.5
5,067,712	+		GFF5070	0.86	-0.2
5,067,715	-		GFF5070	0.87	-0.4
5,067,715	-		GFF5070	0.87	-0.3
5,067,717	+		GFF5070	0.87	+0.1
5,067,725	-		GFF5070	0.87	-0.0
5,067,738	-		GFF5070	0.89	+0.4
5,067,741	+		GFF5070	0.89	-1.8
5,067,749	-		GFF5070	0.89	-0.3
5,068,174	+				-0.6
5,068,174	+				-0.5
5,068,175	+				-0.5
5,068,192	+				+0.2
5,068,200	+				+1.0
5,068,208	+				+0.4
5,068,225	+				-0.5
5,068,225	+				+1.6
5,068,260	+				-1.3
5,068,265	+				-2.0
5,068,270	+				-2.5
5,068,270	+				-1.1
5,068,283	-				-0.9
5,068,283	-				+0.0
5,068,283	-				-1.5
5,068,283	-				-0.1
5,068,292	-				-0.9
5,068,308	+				-0.4
5,068,308	+				-0.6
5,068,311	-				-0.4
5,068,311	-				-0.1
5,068,313	+				+0.3
5,068,313	+				-1.8
5,068,313	+				+0.2
5,068,316	-				-1.2
5,068,316	-				+0.4
5,068,316	-				-1.2
5,068,316	-				-1.3
5,068,316	-				-1.6
5,068,316	-				-0.5
5,068,316	-				-0.6
5,068,321	-				+1.7
5,068,321	-				-2.0
5,068,321	-				+0.7
5,068,324	+				-1.5
5,068,347	+				+0.0
5,068,347	+				-2.2
5,068,347	-				+0.8
5,068,355	-				-0.3
5,068,400	-				-1.1
5,068,403	+				-0.3
5,068,406	-				-2.1
5,068,406	-				+0.5
5,068,413	+				-0.0
5,068,413	+				-0.9
5,068,415	+				+2.3
5,068,422	+				-1.5
5,068,423	-				-0.2
5,068,423	-				+0.2
5,068,423	-				-2.2
5,068,424	-				-0.4
5,068,487	-		GFF5073	0.17	+0.4
5,068,502	-		GFF5073	0.19	+0.3
5,068,537	-		GFF5073	0.24	+1.0
5,068,537	-		GFF5073	0.24	+0.8
5,068,563	+		GFF5073	0.27	+1.1
5,068,563	-		GFF5073	0.27	-0.8
5,068,571	-		GFF5073	0.28	-1.8
5,068,591	-		GFF5073	0.31	-1.0
5,068,609	+		GFF5073	0.34	-1.2
5,068,618	-		GFF5073	0.35	-0.2
5,068,618	-		GFF5073	0.35	-1.6
5,068,627	+		GFF5073	0.36	+0.8
5,068,645	-		GFF5073	0.39	+0.1
5,068,645	-		GFF5073	0.39	+1.0
5,068,645	-		GFF5073	0.39	-1.6
5,068,645	-		GFF5073	0.39	-1.8
5,068,653	-		GFF5073	0.40	-1.6
5,068,671	-		GFF5073	0.42	+0.2
5,068,671	-		GFF5073	0.42	-0.8
5,068,671	-		GFF5073	0.42	+0.4
5,068,673	+		GFF5073	0.43	-1.0
5,068,681	+		GFF5073	0.44	-0.6
5,068,689	-		GFF5073	0.45	-1.8
5,068,689	-		GFF5073	0.45	-1.1
5,068,691	+		GFF5073	0.45	-2.1
5,068,691	+		GFF5073	0.45	-1.6
5,068,691	-		GFF5073	0.45	-1.8
5,068,741	+		GFF5073	0.52	-0.2
5,068,741	+		GFF5073	0.52	-1.9
5,068,741	+		GFF5073	0.52	+0.5
5,068,753	+		GFF5073	0.54	+0.9
5,068,761	+		GFF5073	0.55	+0.4
5,068,761	+		GFF5073	0.55	-0.2
5,068,816	+		GFF5073	0.63	+0.2
5,068,819	-		GFF5073	0.63	-0.2
5,068,861	+		GFF5073	0.69	-0.2
5,068,862	+		GFF5073	0.69	-1.3
5,068,875	-		GFF5073	0.71	-0.6
5,068,881	+		GFF5073	0.72	-0.6
5,068,900	-		GFF5073	0.74	-1.2
5,068,905	-		GFF5073	0.75	-2.0
5,068,905	-		GFF5073	0.75	+0.0
5,068,925	+		GFF5073	0.78	-0.8
5,068,926	+		GFF5073	0.78	-1.5
5,068,926	+		GFF5073	0.78	+0.9
5,068,932	-		GFF5073	0.79	-0.2
5,068,942	+		GFF5073	0.80	-1.2
5,068,947	+		GFF5073	0.81	-0.6
5,068,972	-		GFF5073	0.84	+0.5
5,068,995	+		GFF5073	0.88	-1.5
5,069,003	+		GFF5073	0.89	-1.9