Strain Fitness in Sphingobium sp. HT1-2 around GFF5035

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,029,881	+		GFF5034	0.75	+0.3
5,029,881	+		GFF5034	0.75	+0.2
5,029,881	+		GFF5034	0.75	+0.4
5,029,889	-		GFF5034	0.76	-1.7
5,029,889	-		GFF5034	0.76	+0.7
5,029,889	-		GFF5034	0.76	+1.3
5,029,889	-		GFF5034	0.76	-1.5
5,029,929	-		GFF5034	0.79	-0.4
5,029,933	-		GFF5034	0.79	-0.8
5,029,935	+		GFF5034	0.80	+0.6
5,029,935	+		GFF5034	0.80	+0.8
5,029,943	-		GFF5034	0.80	+0.1
5,029,943	-		GFF5034	0.80	-0.0
5,029,953	+		GFF5034	0.81	-0.4
5,029,961	-		GFF5034	0.82	+1.3
5,029,974	+		GFF5034	0.83	-0.1
5,029,982	-		GFF5034	0.84	+0.7
5,029,997	+		GFF5034	0.85	-0.3
5,029,997	-		GFF5034	0.85	-0.7
5,029,999	+		GFF5034	0.85	-0.1
5,029,999	+		GFF5034	0.85	-0.6
5,030,011	-		GFF5034	0.86	+1.0
5,030,018	+		GFF5034	0.87	-0.9
5,030,019	-		GFF5034	0.87	-0.6
5,030,026	-		GFF5034	0.87	+1.0
5,030,026	-		GFF5034	0.87	+1.0
5,030,037	+		GFF5034	0.88	+0.1
5,030,047	-		GFF5034	0.89	+0.7
5,030,053	+		GFF5034	0.90	-0.6
5,030,069	-				+0.1
5,030,076	+				+0.7
5,030,084	-				+1.0
5,030,088	+				-0.9
5,030,088	+				+0.0
5,030,088	+				+0.9
5,030,088	+				-1.7
5,030,096	+				+1.3
5,030,096	-				-0.5
5,030,096	-				+0.6
5,030,096	-				+0.8
5,030,096	-				-0.1
5,030,096	-				-0.1
5,030,125	+				+0.4
5,030,125	+				-0.6
5,030,125	+				+1.5
5,030,125	+				+0.2
5,030,125	+				-0.1
5,030,125	+				-1.1
5,030,125	+				+0.0
5,030,125	+				+0.9
5,030,133	-				+0.8
5,030,133	-				+0.5
5,030,133	-				+0.7
5,030,140	+				-0.5
5,030,153	+				-1.9
5,030,159	-				+1.7
5,030,216	+				-0.1
5,030,216	+				+0.1
5,030,216	+				-0.3
5,030,216	+				-0.3
5,030,216	+				-0.8
5,030,216	+				-0.9
5,030,223	+				+0.3
5,030,224	+				-0.8
5,030,224	+				+0.6
5,030,224	-				+0.6
5,030,224	-				-1.0
5,030,224	-				-0.7
5,030,232	-				+0.0
5,030,232	-				-2.4
5,030,234	+				+0.1
5,030,239	+				+1.4
5,030,242	-				-1.3
5,030,242	-				-0.3
5,030,242	-				+0.5
5,030,242	-				-0.7
5,030,261	-				-0.3
5,030,264	+				+0.1
5,030,264	+				+0.6
5,030,264	+				+0.3
5,030,282	-				+0.1
5,030,328	-				+0.7
5,030,342	-				-2.1
5,030,348	+				+0.3
5,030,353	+				+0.1
5,030,353	+				+0.8
5,030,353	+				+0.1
5,030,353	+				+0.2
5,030,353	+				-0.3
5,030,353	+				-0.1
5,030,353	+				-0.2
5,030,361	-				+0.3
5,030,361	-				+1.5
5,030,361	-				+0.2
5,030,361	-				+0.1
5,030,361	-				+1.7
5,030,361	-				+0.2
5,030,361	-				+0.9
5,030,361	-				-0.4
5,030,361	-				+0.6
5,030,361	-				+0.1
5,030,378	+				+0.9
5,030,378	+				+1.5
5,030,378	+				+0.6
5,030,410	+				+0.0
5,030,410	+				-1.3
5,030,410	-				+2.0
5,030,415	+				+0.0
5,030,418	-				-0.7
5,030,432	+				+0.1
5,030,433	+				+1.2
5,030,438	+				+0.8
5,030,443	+				+1.7
5,030,456	+				+1.2
5,030,517	+				+0.5
5,030,517	+				-0.9
5,030,520	-				-0.8
5,030,525	-				+1.3
5,030,525	-				-0.7
5,030,532	+				-0.8
5,030,540	-				+0.0
5,030,540	-				+1.1
5,030,540	-				+1.3
5,030,540	-				-0.2
5,030,540	-				-0.7
5,030,540	-				-1.1
5,030,561	+				+0.6
5,030,561	+				+0.5
5,030,569	-				-0.3
5,030,650	+				-0.7
5,030,658	-				+0.3
5,030,663	+				-0.8
5,030,663	+				-2.2
5,030,663	+				+1.1
5,030,668	+				-1.6
5,030,668	+				+0.2
5,030,668	+				-0.8
5,030,671	-				+0.9
5,030,671	-				-0.4
5,030,671	-				-0.4
5,030,671	-				-1.0
5,030,673	+				-0.1
5,030,678	+				-0.7
5,030,680	-				+0.8
5,030,686	+				+1.4
5,030,686	+				-0.2
5,030,727	-				+0.6
5,030,731	+				+0.1
5,030,749	-				-0.3
5,030,809	+				-1.4
5,030,825	+				+0.1
5,030,825	+				+1.3
5,030,830	+				-0.9
5,030,830	+				+0.9
5,030,838	-				+1.1
5,030,847	-				+0.1
5,030,873	+				-1.5
5,030,875	-				+0.8
5,030,881	-				+0.1
5,030,882	-				-0.9
5,030,913	+				+0.6
5,030,931	-				+0.7
5,030,939	-				+0.3
5,030,943	+				-0.3
5,030,966	+		GFF5035	0.11	+0.9
5,030,966	+		GFF5035	0.11	+0.3
5,030,974	-		GFF5035	0.12	-1.3
5,030,974	-		GFF5035	0.12	+1.6
5,030,974	-		GFF5035	0.12	+0.4
5,031,018	+		GFF5035	0.16	+0.7
5,031,031	-		GFF5035	0.17	-0.4
5,031,070	-		GFF5035	0.21	-0.1
5,031,070	-		GFF5035	0.21	-1.3
5,031,078	+		GFF5035	0.22	+0.9
5,031,096	+		GFF5035	0.24	-0.3
5,031,096	+		GFF5035	0.24	-0.3
5,031,096	+		GFF5035	0.24	-0.2
5,031,096	+		GFF5035	0.24	+0.1
5,031,096	+		GFF5035	0.24	-0.3
5,031,096	+		GFF5035	0.24	+0.8
5,031,096	+		GFF5035	0.24	-1.4
5,031,096	+		GFF5035	0.24	-0.3
5,031,096	+		GFF5035	0.24	-0.3
5,031,096	+		GFF5035	0.24	-0.0
5,031,096	+		GFF5035	0.24	-1.8
5,031,104	-		GFF5035	0.25	+0.1
5,031,104	-		GFF5035	0.25	+0.7
5,031,104	-		GFF5035	0.25	+0.1
5,031,104	-		GFF5035	0.25	+0.0
5,031,104	-		GFF5035	0.25	-0.4
5,031,104	-		GFF5035	0.25	-0.2
5,031,104	-		GFF5035	0.25	+1.1
5,031,120	+		GFF5035	0.27	+0.3
5,031,121	-		GFF5035	0.27	+1.4
5,031,121	-		GFF5035	0.27	-0.7
5,031,130	+		GFF5035	0.28	+1.5
5,031,130	+		GFF5035	0.28	-1.0
5,031,132	+		GFF5035	0.28	+0.5
5,031,138	-		GFF5035	0.28	+0.4
5,031,140	+		GFF5035	0.29	-0.1
5,031,140	+		GFF5035	0.29	+1.3
5,031,148	-		GFF5035	0.29	-0.1
5,031,149	+		GFF5035	0.29	+1.2
5,031,150	+		GFF5035	0.30	+0.1
5,031,199	+		GFF5035	0.35	-0.1
5,031,201	+		GFF5035	0.35	+0.1
5,031,204	+		GFF5035	0.35	-0.4
5,031,207	-		GFF5035	0.35	-0.6
5,031,209	+		GFF5035	0.36	-1.6
5,031,229	-		GFF5035	0.38	-0.6
5,031,229	-		GFF5035	0.38	+1.0
5,031,229	-		GFF5035	0.38	+0.9
5,031,249	+		GFF5035	0.40	+0.5
5,031,249	+		GFF5035	0.40	-0.3
5,031,250	+		GFF5035	0.40	-0.8
5,031,250	-		GFF5035	0.40	+0.4
5,031,255	-		GFF5035	0.40	-2.9
5,031,258	+		GFF5035	0.41	+0.2
5,031,258	-		GFF5035	0.41	+0.5
5,031,264	-		GFF5035	0.41	+1.0
5,031,268	-		GFF5035	0.42	+1.6
5,031,269	-		GFF5035	0.42	+0.4
5,031,297	-		GFF5035	0.45	-0.2
5,031,300	+		GFF5035	0.45	+0.3
5,031,316	+		GFF5035	0.46	-0.3
5,031,316	+		GFF5035	0.46	+0.2
5,031,324	-		GFF5035	0.47	-0.3
5,031,324	-		GFF5035	0.47	-0.7
5,031,326	+		GFF5035	0.48	+0.9
5,031,334	-		GFF5035	0.48	-0.0
5,031,334	-		GFF5035	0.48	-0.6
5,031,344	-		GFF5035	0.49	-0.8
5,031,346	+		GFF5035	0.50	+0.8
5,031,393	+		GFF5035	0.54	-0.3
5,031,393	+		GFF5035	0.54	-0.6
5,031,401	-		GFF5035	0.55	-0.3
5,031,416	+		GFF5035	0.57	+1.1
5,031,424	+		GFF5035	0.57	+0.1
5,031,424	+		GFF5035	0.57	-1.6
5,031,424	+		GFF5035	0.57	+1.0
5,031,432	-		GFF5035	0.58	-0.0
5,031,432	-		GFF5035	0.58	+1.0
5,031,432	-		GFF5035	0.58	-1.2
5,031,453	+		GFF5035	0.60	+1.1
5,031,462	-		GFF5035	0.61	-1.4
5,031,470	-		GFF5035	0.62	+0.5
5,031,477	+		GFF5035	0.63	+1.5
5,031,496	+		GFF5035	0.65	-2.1
5,031,518	+		GFF5035	0.67	+0.3
5,031,538	+		GFF5035	0.69	-0.7
5,031,538	+		GFF5035	0.69	+0.7
5,031,543	+		GFF5035	0.70	-0.1
5,031,543	+		GFF5035	0.70	+0.7
5,031,546	-		GFF5035	0.70	+0.6
5,031,546	-		GFF5035	0.70	-1.3
5,031,546	-		GFF5035	0.70	+0.3
5,031,551	-		GFF5035	0.70	-1.0
5,031,553	-		GFF5035	0.71	-0.6
5,031,565	-		GFF5035	0.72	-0.4
5,031,602	+		GFF5035	0.76	+1.5
5,031,602	-		GFF5035	0.76	+0.2
5,031,604	-		GFF5035	0.76	+1.6
5,031,610	-		GFF5035	0.76	-2.0
5,031,610	-		GFF5035	0.76	+1.7
5,031,610	-		GFF5035	0.76	+0.4
5,031,614	-		GFF5035	0.77	+0.1
5,031,614	-		GFF5035	0.77	-0.2
5,031,625	+		GFF5035	0.78	+0.7
5,031,632	+		GFF5035	0.79	-0.3
5,031,633	+		GFF5035	0.79	-0.4
5,031,634	+		GFF5035	0.79	-0.3
5,031,641	-		GFF5035	0.80	-1.9
5,031,666	-		GFF5035	0.82	-0.8
5,031,713	-		GFF5035	0.87	+0.8
5,031,718	+		GFF5035	0.87	-0.1
5,031,718	+		GFF5035	0.87	+2.1
5,031,726	-		GFF5035	0.88	-0.7
5,031,726	-		GFF5035	0.88	+0.0
5,031,736	+		GFF5035	0.89	+1.3
5,031,754	-				+1.2
5,031,755	+				-0.3
5,031,755	+				-0.4
5,031,772	+				+0.6
5,031,779	+				+0.1
5,031,780	-				-0.9
5,031,782	-				-0.5
5,031,782	-				+2.2
5,031,813	-				+0.6
5,031,819	+				+0.7
5,031,827	-				+1.0
5,031,827	-				+0.8
5,031,827	-				-0.3
5,031,827	-				-0.2
5,031,827	-				+0.4
5,031,848	-				+1.2
5,031,848	-				+0.6
5,031,863	+				+1.7
5,031,863	+				+0.7
5,031,863	+				+1.6
5,031,863	+				+1.4
5,031,863	+				+0.1
5,031,863	+				+0.9
5,031,863	+				+0.3
5,031,863	+				+0.2
5,031,863	+				+0.9
5,031,871	-				-1.0
5,031,871	-				+1.3
5,031,871	-				-1.3
5,031,871	-				-0.1
5,031,871	-				-0.3
5,031,871	-				+0.3
5,031,871	-				+1.0
5,031,871	-				+0.3
5,031,871	-				+1.5
5,031,871	-				-0.7
5,031,871	-				+0.6
5,031,871	-				-0.1
5,031,878	+				-0.9
5,031,888	+				-0.1
5,031,888	+				+0.7
5,031,888	+				+1.0
5,031,888	+				-0.1
5,031,888	+				-0.1
5,031,888	+				+0.5
5,031,896	-				+0.6
5,031,896	-				+1.3
5,031,896	-				-0.7
5,031,896	-				+1.7
5,031,896	-				+1.6
5,031,896	-				-0.9
5,031,903	+				+0.1
5,031,906	+				+1.1
5,031,911	+				+0.2
5,031,914	-				+1.0
5,031,940	-				+1.2
5,031,984	+		GFF5036	0.11	+1.3
5,032,007	+		GFF5036	0.13	+1.7
5,032,015	-		GFF5036	0.13	-2.1
5,032,021	-		GFF5036	0.14	+0.3
5,032,022	+		GFF5036	0.14	+0.9
5,032,030	-		GFF5036	0.14	-0.4
5,032,030	-		GFF5036	0.14	+2.0
5,032,035	-		GFF5036	0.15	+1.7
5,032,041	+		GFF5036	0.15	+0.1
5,032,041	+		GFF5036	0.15	-0.2
5,032,046	+		GFF5036	0.15	-2.1
5,032,051	+		GFF5036	0.16	-0.1
5,032,051	+		GFF5036	0.16	-0.4
5,032,051	+		GFF5036	0.16	+1.7
5,032,051	+		GFF5036	0.16	-0.9
5,032,054	-		GFF5036	0.16	-1.9
5,032,056	+		GFF5036	0.16	-0.5
5,032,056	+		GFF5036	0.16	-1.8
5,032,059	-		GFF5036	0.16	+1.0
5,032,059	-		GFF5036	0.16	-0.5
5,032,059	-		GFF5036	0.16	+1.7
5,032,064	-		GFF5036	0.17	+2.0
5,032,071	+		GFF5036	0.17	+1.4
5,032,108	+		GFF5036	0.20	+0.5
5,032,112	-		GFF5036	0.20	-0.2
5,032,115	+		GFF5036	0.20	-1.4
5,032,119	+		GFF5036	0.21	+0.8
5,032,119	+		GFF5036	0.21	+0.7
5,032,127	+		GFF5036	0.21	-0.7
5,032,135	+		GFF5036	0.22	-0.3
5,032,135	+		GFF5036	0.22	+0.7
5,032,135	-		GFF5036	0.22	+1.1
5,032,137	+		GFF5036	0.22	-0.9
5,032,143	-		GFF5036	0.22	+0.7
5,032,143	-		GFF5036	0.22	+0.3
5,032,143	-		GFF5036	0.22	-0.3
5,032,150	-		GFF5036	0.23	-1.8
5,032,158	+		GFF5036	0.23	-0.0
5,032,166	-		GFF5036	0.24	-0.6
5,032,171	-		GFF5036	0.24	-0.9
5,032,171	-		GFF5036	0.24	-0.5
5,032,171	-		GFF5036	0.24	-0.4
5,032,171	-		GFF5036	0.24	-0.7
5,032,184	-		GFF5036	0.25	-1.6
5,032,184	-		GFF5036	0.25	-0.3
5,032,187	+		GFF5036	0.25	+1.1
5,032,187	+		GFF5036	0.25	-1.0
5,032,187	+		GFF5036	0.25	-0.2
5,032,187	+		GFF5036	0.25	+0.4
5,032,187	+		GFF5036	0.25	+0.9
5,032,187	+		GFF5036	0.25	+1.5
5,032,195	-		GFF5036	0.26	-0.4
5,032,195	-		GFF5036	0.26	+1.1
5,032,195	-		GFF5036	0.26	-0.4
5,032,195	-		GFF5036	0.26	+0.5
5,032,195	-		GFF5036	0.26	+0.3
5,032,195	-		GFF5036	0.26	+0.0
5,032,195	-		GFF5036	0.26	+1.0
5,032,209	-		GFF5036	0.27	-0.4
5,032,211	+		GFF5036	0.27	+1.1
5,032,212	-		GFF5036	0.27	-0.9
5,032,219	-		GFF5036	0.28	-1.9
5,032,219	-		GFF5036	0.28	-0.1
5,032,219	-		GFF5036	0.28	+0.9
5,032,227	-		GFF5036	0.28	+0.6
5,032,229	+		GFF5036	0.29	+0.4
5,032,229	+		GFF5036	0.29	+0.6
5,032,246	+		GFF5036	0.30	+0.5
5,032,303	-		GFF5036	0.34	+1.4
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5,032,825	+		GFF5036	0.71	-1.9
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