Strain Fitness in Sphingobium sp. HT1-2 around GFF5026

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,016,406	+				-1.1
5,016,459	+		GFF5024	0.35	+0.2
5,016,461	+		GFF5024	0.37	-0.7
5,016,461	+		GFF5024	0.37	-0.1
5,016,467	-		GFF5024	0.40	+0.1
5,016,467	-		GFF5024	0.40	+0.2
5,016,516	-		GFF5024	0.66	-0.3
5,016,521	+		GFF5024	0.69	-0.1
5,016,522	-		GFF5024	0.69	+0.9
5,016,527	+		GFF5024	0.72	-0.7
5,016,535	-		GFF5024	0.76	+0.8
5,016,535	-		GFF5024	0.76	+0.8
5,016,549	+		GFF5024	0.84	-0.1
5,016,552	-		GFF5024	0.85	-0.9
5,016,552	-		GFF5024	0.85	-0.6
5,016,553	+		GFF5024	0.86	+1.6
5,016,553	+		GFF5024	0.86	-0.6
5,016,557	-		GFF5024	0.88	+0.7
5,016,566	-				+0.0
5,016,581	-				+1.2
5,016,654	+				+0.1
5,016,659	+				+0.2
5,016,662	-				-1.4
5,016,664	+				-1.5
5,016,667	-				-0.6
5,016,667	-				+1.0
5,016,669	+				-1.5
5,016,686	+				-1.4
5,016,686	+				-0.6
5,016,694	-				+0.2
5,016,694	-				-1.0
5,016,703	+				-0.3
5,016,708	+				+1.2
5,016,716	-				+0.8
5,016,716	-				+0.2
5,016,719	+				-1.4
5,016,721	-				-0.7
5,016,726	-				+0.2
5,016,772	+				-0.5
5,016,772	+				-0.7
5,016,772	+				+0.6
5,016,780	-				-0.6
5,016,831	-				-1.4
5,016,845	+				+0.9
5,016,845	+				+0.3
5,016,853	-				+1.3
5,016,853	-				-1.3
5,016,888	+				+0.1
5,016,888	+				-0.0
5,016,888	+				+0.1
5,016,896	-				+0.5
5,016,904	-				-0.5
5,016,923	+				+0.5
5,016,923	+				+0.9
5,016,947	+				+1.4
5,016,953	+				+0.3
5,016,953	-				+1.0
5,016,955	-				+0.3
5,016,963	+				-0.4
5,016,963	+				-0.1
5,016,966	-				+0.4
5,016,966	-				-2.1
5,016,971	-		GFF5025	0.11	+0.3
5,016,971	-		GFF5025	0.11	+0.7
5,016,971	-		GFF5025	0.11	-1.6
5,017,000	-		GFF5025	0.22	+0.4
5,017,004	-		GFF5025	0.23	+0.7
5,017,014	-		GFF5025	0.26	+0.4
5,017,059	+		GFF5025	0.42	+2.1
5,017,072	-		GFF5025	0.47	+0.5
5,017,075	+		GFF5025	0.48	-0.7
5,017,075	+		GFF5025	0.48	+0.5
5,017,083	-		GFF5025	0.50	+0.1
5,017,095	+		GFF5025	0.55	+0.6
5,017,095	+		GFF5025	0.55	-0.5
5,017,107	+		GFF5025	0.59	-1.1
5,017,128	+		GFF5025	0.66	+1.2
5,017,136	-		GFF5025	0.69	+0.6
5,017,136	-		GFF5025	0.69	-0.3
5,017,136	-		GFF5025	0.69	+0.1
5,017,144	+		GFF5025	0.72	+0.9
5,017,146	-		GFF5025	0.72	-0.5
5,017,187	+		GFF5025	0.86	+1.1
5,017,206	+				+0.2
5,017,206	+				+0.6
5,017,206	+				-0.0
5,017,212	+				-0.2
5,017,212	+				+0.4
5,017,214	-				+0.3
5,017,214	-				-0.7
5,017,220	-				-0.7
5,017,220	-				-2.0
5,017,220	-				-0.5
5,017,227	+				+1.1
5,017,236	+				+1.3
5,017,254	-				+0.1
5,017,275	+				-1.0
5,017,275	+				+0.5
5,017,430	+				+0.2
5,017,430	+				-1.0
5,017,433	-				+1.9
5,017,438	-				+0.2
5,017,438	-				+0.3
5,017,438	-				+1.0
5,017,438	-				+0.7
5,017,550	+				+1.4
5,017,563	-		GFF5026	0.10	-1.4
5,017,618	-		GFF5026	0.14	+0.8
5,017,621	+		GFF5026	0.14	+0.3
5,017,629	-		GFF5026	0.15	+0.3
5,017,669	+		GFF5026	0.17	-0.1
5,017,669	+		GFF5026	0.17	-0.6
5,017,674	+		GFF5026	0.17	-1.2
5,017,677	-		GFF5026	0.18	+0.1
5,017,677	-		GFF5026	0.18	-0.1
5,017,677	-		GFF5026	0.18	-0.6
5,017,677	-		GFF5026	0.18	+1.0
5,017,677	-		GFF5026	0.18	+0.5
5,017,679	+		GFF5026	0.18	-1.1
5,017,687	-		GFF5026	0.18	-1.5
5,017,687	-		GFF5026	0.18	-0.8
5,017,687	-		GFF5026	0.18	+1.3
5,017,687	-		GFF5026	0.18	-0.4
5,017,689	+		GFF5026	0.18	-0.9
5,017,692	-		GFF5026	0.18	+0.7
5,017,694	+		GFF5026	0.19	+0.2
5,017,739	-		GFF5026	0.21	-1.1
5,017,758	-		GFF5026	0.23	+0.3
5,017,764	-		GFF5026	0.23	-0.5
5,017,826	+		GFF5026	0.27	-0.3
5,017,831	+		GFF5026	0.27	+1.6
5,017,834	-		GFF5026	0.27	+0.8
5,017,839	-		GFF5026	0.28	+0.5
5,017,839	-		GFF5026	0.28	-0.6
5,017,839	-		GFF5026	0.28	-0.5
5,017,839	-		GFF5026	0.28	+0.4
5,017,846	-		GFF5026	0.28	+0.2
5,017,846	-		GFF5026	0.28	+1.1
5,017,860	+		GFF5026	0.29	-0.8
5,017,860	+		GFF5026	0.29	+0.2
5,017,868	-		GFF5026	0.29	-1.6
5,017,875	+		GFF5026	0.30	-0.0
5,017,875	+		GFF5026	0.30	+1.4
5,017,878	-		GFF5026	0.30	+0.0
5,017,883	-		GFF5026	0.30	+1.3
5,017,883	-		GFF5026	0.30	+0.4
5,017,900	+		GFF5026	0.31	-1.6
5,017,940	+		GFF5026	0.34	-2.1
5,017,943	+		GFF5026	0.34	+0.4
5,017,943	+		GFF5026	0.34	-0.5
5,017,943	+		GFF5026	0.34	-1.0
5,017,946	-		GFF5026	0.34	-0.0
5,017,946	-		GFF5026	0.34	+1.2
5,017,984	+		GFF5026	0.37	+0.8
5,017,989	+		GFF5026	0.37	+0.4
5,017,992	-		GFF5026	0.37	-1.6
5,018,016	-		GFF5026	0.39	-0.3
5,018,037	+		GFF5026	0.40	+0.3
5,018,044	-		GFF5026	0.40	-1.8
5,018,047	+		GFF5026	0.41	+0.5
5,018,069	+		GFF5026	0.42	-1.4
5,018,093	+		GFF5026	0.43	-0.8
5,018,123	+		GFF5026	0.45	-0.3
5,018,144	-		GFF5026	0.47	+1.8
5,018,145	+		GFF5026	0.47	+1.1
5,018,148	-		GFF5026	0.47	-0.4
5,018,150	+		GFF5026	0.47	+0.2
5,018,150	+		GFF5026	0.47	+0.8
5,018,150	+		GFF5026	0.47	-1.6
5,018,154	-		GFF5026	0.47	+0.1
5,018,154	-		GFF5026	0.47	+0.5
5,018,156	+		GFF5026	0.47	-1.5
5,018,158	-		GFF5026	0.47	+0.4
5,018,158	-		GFF5026	0.47	+0.4
5,018,158	-		GFF5026	0.47	-0.4
5,018,158	-		GFF5026	0.47	-0.9
5,018,164	-		GFF5026	0.48	+0.4
5,018,164	-		GFF5026	0.48	+0.7
5,018,164	-		GFF5026	0.48	-1.4
5,018,187	+		GFF5026	0.49	+0.3
5,018,193	-		GFF5026	0.50	+1.4
5,018,223	+		GFF5026	0.51	+0.4
5,018,223	+		GFF5026	0.51	+0.5
5,018,231	-		GFF5026	0.52	-1.4
5,018,235	+		GFF5026	0.52	+0.3
5,018,243	-		GFF5026	0.53	+0.4
5,018,260	+		GFF5026	0.54	-0.5
5,018,280	+		GFF5026	0.55	-1.6
5,018,282	+		GFF5026	0.55	-0.1
5,018,288	-		GFF5026	0.55	-0.5
5,018,316	+		GFF5026	0.57	+0.4
5,018,324	-		GFF5026	0.58	-0.9
5,018,351	+		GFF5026	0.59	-1.2
5,018,362	+		GFF5026	0.60	-0.0
5,018,393	+		GFF5026	0.62	+0.5
5,018,450	-		GFF5026	0.66	-0.6
5,018,452	+		GFF5026	0.66	-1.4
5,018,452	+		GFF5026	0.66	-0.6
5,018,455	-		GFF5026	0.66	+0.2
5,018,461	+		GFF5026	0.66	-0.9
5,018,467	+		GFF5026	0.67	-0.5
5,018,467	-		GFF5026	0.67	+0.7
5,018,474	+		GFF5026	0.67	-0.6
5,018,475	-		GFF5026	0.67	+0.0
5,018,476	-		GFF5026	0.67	+1.1
5,018,476	-		GFF5026	0.67	-0.1
5,018,485	+		GFF5026	0.68	+0.9
5,018,485	+		GFF5026	0.68	+0.2
5,018,485	+		GFF5026	0.68	-0.1
5,018,485	+		GFF5026	0.68	-0.2
5,018,485	+		GFF5026	0.68	-1.2
5,018,485	+		GFF5026	0.68	-0.5
5,018,485	+		GFF5026	0.68	-0.4
5,018,485	+		GFF5026	0.68	+0.6
5,018,485	+		GFF5026	0.68	-1.2
5,018,485	+		GFF5026	0.68	+0.9
5,018,485	+		GFF5026	0.68	+0.2
5,018,485	+		GFF5026	0.68	+0.6
5,018,486	+		GFF5026	0.68	-0.7
5,018,491	-		GFF5026	0.68	+0.3
5,018,491	-		GFF5026	0.68	-2.1
5,018,493	+		GFF5026	0.68	-0.6
5,018,493	-		GFF5026	0.68	+0.2
5,018,493	-		GFF5026	0.68	+0.2
5,018,493	-		GFF5026	0.68	+1.5
5,018,493	-		GFF5026	0.68	+1.5
5,018,493	-		GFF5026	0.68	-0.5
5,018,493	-		GFF5026	0.68	-0.3
5,018,495	+		GFF5026	0.68	-1.7
5,018,495	+		GFF5026	0.68	-0.5
5,018,495	+		GFF5026	0.68	-0.8
5,018,501	-		GFF5026	0.69	+1.0
5,018,501	-		GFF5026	0.69	+0.4
5,018,503	-		GFF5026	0.69	-0.5
5,018,503	-		GFF5026	0.69	+1.3
5,018,503	-		GFF5026	0.69	-1.4
5,018,503	-		GFF5026	0.69	+0.5
5,018,503	-		GFF5026	0.69	+0.3
5,018,503	-		GFF5026	0.69	-0.0
5,018,503	-		GFF5026	0.69	+0.0
5,018,503	-		GFF5026	0.69	-0.6
5,018,503	-		GFF5026	0.69	+0.6
5,018,503	-		GFF5026	0.69	-0.7
5,018,503	-		GFF5026	0.69	+1.0
5,018,503	-		GFF5026	0.69	+0.2
5,018,510	+		GFF5026	0.69	-0.2
5,018,510	+		GFF5026	0.69	-1.8
5,018,510	+		GFF5026	0.69	+0.5
5,018,510	+		GFF5026	0.69	+0.0
5,018,510	+		GFF5026	0.69	+0.3
5,018,510	+		GFF5026	0.69	-0.1
5,018,510	+		GFF5026	0.69	+1.3
5,018,518	-		GFF5026	0.70	-0.3
5,018,518	-		GFF5026	0.70	+0.9
5,018,518	-		GFF5026	0.70	+0.6
5,018,534	+		GFF5026	0.71	+0.4
5,018,550	-		GFF5026	0.72	-0.5
5,018,586	+		GFF5026	0.74	-0.5
5,018,586	+		GFF5026	0.74	+0.2
5,018,586	+		GFF5026	0.74	-1.5
5,018,586	+		GFF5026	0.74	+0.3
5,018,594	-		GFF5026	0.74	-0.0
5,018,594	-		GFF5026	0.74	+1.6
5,018,594	-		GFF5026	0.74	-1.1
5,018,596	-		GFF5026	0.75	+0.4
5,018,597	+		GFF5026	0.75	-0.4
5,018,605	-		GFF5026	0.75	+1.2
5,018,616	+		GFF5026	0.76	-0.4
5,018,616	+		GFF5026	0.76	-1.9
5,018,616	+		GFF5026	0.76	+0.8
5,018,616	+		GFF5026	0.76	-0.6
5,018,621	+		GFF5026	0.76	+0.4
5,018,624	-		GFF5026	0.76	-1.1
5,018,624	-		GFF5026	0.76	-2.7
5,018,624	-		GFF5026	0.76	+0.7
5,018,624	-		GFF5026	0.76	-0.5
5,018,624	-		GFF5026	0.76	-0.1
5,018,628	+		GFF5026	0.77	+0.9
5,018,634	-		GFF5026	0.77	+0.3
5,018,634	-		GFF5026	0.77	-0.7
5,018,659	-		GFF5026	0.79	+0.1
5,018,660	+		GFF5026	0.79	-0.0
5,018,660	+		GFF5026	0.79	+0.3
5,018,660	+		GFF5026	0.79	-0.7
5,018,661	+		GFF5026	0.79	+0.7
5,018,661	+		GFF5026	0.79	-1.7
5,018,668	-		GFF5026	0.79	+1.5
5,018,668	-		GFF5026	0.79	+0.3
5,018,669	-		GFF5026	0.79	-2.8
5,018,676	+		GFF5026	0.80	+0.2
5,018,683	+		GFF5026	0.80	-1.2
5,018,693	+		GFF5026	0.81	+0.9
5,018,694	-		GFF5026	0.81	+0.4
5,018,707	+		GFF5026	0.82	+0.6
5,018,710	-		GFF5026	0.82	+0.3
5,018,710	-		GFF5026	0.82	+0.2
5,018,724	+		GFF5026	0.83	+0.4
5,018,732	-		GFF5026	0.83	+0.0
5,018,733	+		GFF5026	0.83	+0.1
5,018,733	+		GFF5026	0.83	-2.0
5,018,736	-		GFF5026	0.83	+0.9
5,018,741	-		GFF5026	0.84	+0.7
5,018,741	-		GFF5026	0.84	+0.5
5,018,741	-		GFF5026	0.84	-0.4
5,018,741	-		GFF5026	0.84	-0.0
5,018,741	-		GFF5026	0.84	-2.3
5,018,741	-		GFF5026	0.84	-0.0
5,018,762	-		GFF5026	0.85	-0.2
5,018,767	-		GFF5026	0.85	+0.2
5,018,771	-		GFF5026	0.85	-0.4
5,018,805	+		GFF5026	0.88	-0.5
5,018,813	-		GFF5026	0.88	-0.2
5,018,848	+				+0.0
5,018,856	-				+0.1
5,018,880	-				+1.0
5,018,914	+				+0.6
5,018,922	-				-1.5
5,018,934	+				-2.3
5,018,934	+				-0.7
5,018,992	+				+0.4
5,019,009	-				+0.6
5,019,015	-				-0.3
5,019,058	+				-2.3
5,019,058	+				+0.4
5,019,066	-				-0.1
5,019,066	-				-0.6
5,019,097	+				+0.5
5,019,097	+				+0.7
5,019,097	+				+0.9
5,019,103	+				+0.7
5,019,121	-				+1.2
5,019,152	+				-0.4
5,019,160	-				+0.7
5,019,162	+				-0.1
5,019,162	+				-1.7
5,019,169	+				+1.5
5,019,170	-				-1.3
5,019,171	+				+0.1
5,019,171	+				+0.2
5,019,171	+				-0.0
5,019,179	-				+0.4
5,019,179	-				-2.3
5,019,179	-				+0.7
5,019,179	-				-0.7
5,019,179	-				+1.5
5,019,179	-				+1.1
5,019,184	-				+0.9
5,019,186	+				+0.5
5,019,194	-				+0.1
5,019,194	-				-1.7
5,019,256	+				+0.0
5,019,257	+				-1.0
5,019,265	-				+0.7
5,019,265	-				-0.2
5,019,310	-				+1.0
5,019,335	+				-0.2
5,019,343	-				-0.0
5,019,348	+				+0.3
5,019,348	+				+0.6
5,019,348	+				-0.1
5,019,351	-				+0.5
5,019,356	-				+0.8
5,019,356	-				+0.1
5,019,358	+				+1.4
5,019,359	+				+0.1
5,019,386	-				-0.9
5,019,396	+				-0.3
5,019,424	-				-0.3
5,019,424	-				+0.7
5,019,439	+		GFF5027	0.10	-0.3
5,019,455	+		GFF5027	0.12	-0.4
5,019,475	-		GFF5027	0.14	-2.5
5,019,501	+		GFF5027	0.16	-0.5
5,019,506	+		GFF5027	0.17	+0.5
5,019,514	-		GFF5027	0.18	+0.5
5,019,534	+		GFF5027	0.20	-0.3
5,019,534	+		GFF5027	0.20	+0.2
5,019,542	-		GFF5027	0.21	+1.2
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