Strain Fitness in Sphingobium sp. HT1-2 around GFF4983

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,981,505	+		GFF4982	0.26	+1.0
4,981,516	+		GFF4982	0.27	-2.6
4,981,516	+		GFF4982	0.27	+1.6
4,981,516	+		GFF4982	0.27	+0.3
4,981,524	-		GFF4982	0.28	+0.9
4,981,524	-		GFF4982	0.28	+1.3
4,981,524	-		GFF4982	0.28	-0.7
4,981,537	+		GFF4982	0.29	-0.8
4,981,567	-		GFF4982	0.31	-1.6
4,981,586	-		GFF4982	0.33	+0.4
4,981,586	-		GFF4982	0.33	-0.1
4,981,597	+		GFF4982	0.34	-0.4
4,981,615	+		GFF4982	0.35	-0.6
4,981,637	+		GFF4982	0.37	-1.3
4,981,637	+		GFF4982	0.37	+0.2
4,981,645	-		GFF4982	0.37	-0.6
4,981,645	-		GFF4982	0.37	-0.3
4,981,645	-		GFF4982	0.37	+1.8
4,981,647	-		GFF4982	0.38	-0.7
4,981,664	-		GFF4982	0.39	+0.6
4,981,666	+		GFF4982	0.39	+1.5
4,981,674	-		GFF4982	0.40	+0.0
4,981,695	-		GFF4982	0.41	+0.4
4,981,698	+		GFF4982	0.42	-1.0
4,981,700	-		GFF4982	0.42	-0.8
4,981,700	-		GFF4982	0.42	+0.4
4,981,716	-		GFF4982	0.43	+0.5
4,981,717	-		GFF4982	0.43	+0.7
4,981,718	-		GFF4982	0.43	-0.0
4,981,718	-		GFF4982	0.43	-2.0
4,981,741	+		GFF4982	0.45	-0.3
4,981,755	+		GFF4982	0.46	-0.3
4,981,755	+		GFF4982	0.46	-1.6
4,981,755	+		GFF4982	0.46	-0.2
4,981,755	+		GFF4982	0.46	-1.6
4,981,755	+		GFF4982	0.46	-1.0
4,981,755	+		GFF4982	0.46	-0.7
4,981,755	+		GFF4982	0.46	-1.2
4,981,755	+		GFF4982	0.46	-0.9
4,981,763	-		GFF4982	0.47	+0.5
4,981,763	-		GFF4982	0.47	+0.9
4,981,763	-		GFF4982	0.47	-0.0
4,981,763	-		GFF4982	0.47	-1.3
4,981,763	-		GFF4982	0.47	+0.1
4,981,763	-		GFF4982	0.47	+0.7
4,981,786	+		GFF4982	0.49	-0.4
4,981,796	+		GFF4982	0.49	-1.6
4,981,801	+		GFF4982	0.50	-0.1
4,981,804	-		GFF4982	0.50	-1.3
4,981,804	-		GFF4982	0.50	+1.5
4,981,804	-		GFF4982	0.50	+0.8
4,981,809	-		GFF4982	0.50	+1.1
4,981,822	+		GFF4982	0.51	-1.0
4,981,822	+		GFF4982	0.51	-1.3
4,981,847	+		GFF4982	0.53	+0.1
4,981,867	+		GFF4982	0.55	+0.1
4,981,872	+		GFF4982	0.55	+0.3
4,981,877	+		GFF4982	0.56	-0.2
4,981,877	+		GFF4982	0.56	-0.6
4,981,877	+		GFF4982	0.56	+1.2
4,981,877	+		GFF4982	0.56	+1.6
4,981,877	+		GFF4982	0.56	+0.3
4,981,877	+		GFF4982	0.56	+0.4
4,981,877	+		GFF4982	0.56	-0.5
4,981,882	+		GFF4982	0.56	-0.5
4,981,882	-		GFF4982	0.56	-0.3
4,981,885	-		GFF4982	0.56	-1.6
4,981,885	-		GFF4982	0.56	+1.1
4,981,885	-		GFF4982	0.56	+0.9
4,981,885	-		GFF4982	0.56	-0.3
4,981,885	-		GFF4982	0.56	+1.0
4,981,887	+		GFF4982	0.57	+0.7
4,981,887	+		GFF4982	0.57	+0.2
4,981,887	+		GFF4982	0.57	-0.6
4,981,895	-		GFF4982	0.57	+0.0
4,981,895	-		GFF4982	0.57	+0.8
4,981,895	-		GFF4982	0.57	+1.0
4,981,895	-		GFF4982	0.57	-0.5
4,981,935	+		GFF4982	0.60	-0.5
4,981,937	-		GFF4982	0.61	+1.0
4,981,943	-		GFF4982	0.61	+0.1
4,981,950	+		GFF4982	0.62	-0.6
4,981,950	+		GFF4982	0.62	-1.3
4,981,950	+		GFF4982	0.62	+0.5
4,981,950	+		GFF4982	0.62	-0.3
4,981,952	+		GFF4982	0.62	-0.6
4,981,958	-		GFF4982	0.62	-0.8
4,981,958	-		GFF4982	0.62	+0.1
4,981,958	-		GFF4982	0.62	+0.1
4,981,958	-		GFF4982	0.62	+1.0
4,981,958	-		GFF4982	0.62	+0.7
4,982,006	+		GFF4982	0.66	-0.4
4,982,014	-		GFF4982	0.67	-0.4
4,982,014	-		GFF4982	0.67	-0.1
4,982,017	+		GFF4982	0.67	-0.3
4,982,038	-		GFF4982	0.68	+0.7
4,982,046	-		GFF4982	0.69	+1.2
4,982,055	+		GFF4982	0.70	-0.1
4,982,056	+		GFF4982	0.70	+0.5
4,982,056	-		GFF4982	0.70	-0.0
4,982,056	-		GFF4982	0.70	-0.5
4,982,061	+		GFF4982	0.70	-0.3
4,982,064	-		GFF4982	0.71	+0.2
4,982,087	+		GFF4982	0.72	-0.5
4,982,092	+		GFF4982	0.73	-1.3
4,982,095	-		GFF4982	0.73	-0.2
4,982,099	+		GFF4982	0.73	+0.7
4,982,107	-		GFF4982	0.74	+0.5
4,982,112	-		GFF4982	0.74	+0.4
4,982,112	-		GFF4982	0.74	+0.7
4,982,115	-		GFF4982	0.75	+1.3
4,982,115	-		GFF4982	0.75	-0.2
4,982,133	-		GFF4982	0.76	+0.2
4,982,193	+		GFF4982	0.81	-2.1
4,982,193	-		GFF4982	0.81	-0.9
4,982,197	-		GFF4982	0.81	-1.2
4,982,210	+		GFF4982	0.82	+1.5
4,982,218	-		GFF4982	0.83	-0.2
4,982,223	-		GFF4982	0.83	-0.4
4,982,229	+		GFF4982	0.84	+0.8
4,982,237	-		GFF4982	0.84	+1.3
4,982,237	-		GFF4982	0.84	+0.3
4,982,247	+		GFF4982	0.85	-1.1
4,982,255	-		GFF4982	0.86	+1.4
4,982,255	-		GFF4982	0.86	-0.8
4,982,255	-		GFF4982	0.86	-1.0
4,982,291	+		GFF4982	0.88	-1.3
4,982,291	+		GFF4982	0.88	+0.4
4,982,296	+		GFF4982	0.89	-0.2
4,982,299	-		GFF4982	0.89	+0.7
4,982,309	-		GFF4982	0.90	-0.3
4,982,311	+				+1.2
4,982,314	-				-0.4
4,982,335	+				+0.9
4,982,335	+				-0.5
4,982,348	-				+0.4
4,982,359	+				+0.9
4,982,359	+				-0.3
4,982,359	+				+1.3
4,982,364	+				+1.5
4,982,364	+				-0.3
4,982,367	-				+0.0
4,982,367	-				+0.4
4,982,367	-				-0.7
4,982,367	-				+0.5
4,982,367	-				+0.5
4,982,377	-				-0.4
4,982,377	-				-0.1
4,982,392	+				-0.0
4,982,408	+				-0.8
4,982,423	+				-0.7
4,982,431	-				+0.5
4,982,431	-				+0.0
4,982,438	-				-0.6
4,982,479	+				-0.3
4,982,490	+				+1.5
4,982,490	+				-0.5
4,982,490	+				-0.6
4,982,490	+				+0.9
4,982,490	+				-0.6
4,982,490	+				+0.1
4,982,490	+				-0.5
4,982,498	-				+0.3
4,982,498	-				+0.5
4,982,498	-				-1.3
4,982,498	-				+0.7
4,982,507	-				+1.6
4,982,542	-				+1.3
4,982,544	-				-1.3
4,982,547	+				+1.1
4,982,562	-				+0.1
4,982,565	-				+2.3
4,982,565	-				+0.5
4,982,582	+				-0.3
4,982,590	-				+0.0
4,982,597	-				-1.5
4,982,599	+				+0.5
4,982,599	+				-0.3
4,982,601	+				+0.4
4,982,601	+				-2.0
4,982,604	+				-0.6
4,982,604	+				+0.1
4,982,607	-				-0.5
4,982,609	-				-0.6
4,982,612	-				+0.9
4,982,612	-				+0.2
4,982,632	+				-0.7
4,982,651	+				+0.5
4,982,651	+				+0.1
4,982,699	+				-0.1
4,982,704	+				+0.0
4,982,719	+				-0.3
4,982,719	+				+0.5
4,982,727	-				-1.2
4,982,742	-				+0.7
4,982,742	-				+1.6
4,982,746	+				+0.5
4,982,754	-				-1.1
4,982,754	-				+0.4
4,982,754	-				-0.4
4,982,756	+				+0.7
4,982,794	-		GFF4983	0.10	-0.6
4,982,851	-		GFF4983	0.12	-0.5
4,982,870	-		GFF4983	0.13	+0.9
4,982,893	+		GFF4983	0.14	+1.4
4,982,918	+		GFF4983	0.15	+0.3
4,982,918	-		GFF4983	0.15	+0.4
4,983,021	+		GFF4983	0.18	-0.3
4,983,021	+		GFF4983	0.18	+0.8
4,983,021	+		GFF4983	0.18	-0.1
4,983,021	+		GFF4983	0.18	-1.0
4,983,021	+		GFF4983	0.18	+0.5
4,983,021	+		GFF4983	0.18	-1.1
4,983,021	+		GFF4983	0.18	-1.5
4,983,021	+		GFF4983	0.18	-0.9
4,983,022	+		GFF4983	0.18	+0.1
4,983,022	+		GFF4983	0.18	-1.7
4,983,029	-		GFF4983	0.19	+0.5
4,983,029	-		GFF4983	0.19	+1.0
4,983,029	-		GFF4983	0.19	+0.4
4,983,029	-		GFF4983	0.19	+0.4
4,983,029	-		GFF4983	0.19	-0.5
4,983,030	-		GFF4983	0.19	+1.2
4,983,030	-		GFF4983	0.19	-0.4
4,983,035	-		GFF4983	0.19	-1.3
4,983,038	+		GFF4983	0.19	+0.3
4,983,038	+		GFF4983	0.19	-3.2
4,983,038	+		GFF4983	0.19	-0.1
4,983,038	+		GFF4983	0.19	+1.7
4,983,038	+		GFF4983	0.19	+0.2
4,983,046	-		GFF4983	0.19	-1.1
4,983,046	-		GFF4983	0.19	+0.3
4,983,073	-		GFF4983	0.20	+0.2
4,983,096	+		GFF4983	0.21	-0.7
4,983,104	-		GFF4983	0.21	+0.0
4,983,125	-		GFF4983	0.22	-0.6
4,983,135	-		GFF4983	0.22	-0.2
4,983,153	-		GFF4983	0.23	-0.5
4,983,153	-		GFF4983	0.23	+0.1
4,983,169	+		GFF4983	0.24	+1.1
4,983,169	+		GFF4983	0.24	+1.5
4,983,177	+		GFF4983	0.24	+1.1
4,983,177	-		GFF4983	0.24	+0.2
4,983,177	-		GFF4983	0.24	+1.1
4,983,187	-		GFF4983	0.24	-0.9
4,983,233	-		GFF4983	0.26	+0.5
4,983,243	-		GFF4983	0.26	-1.7
4,983,293	+		GFF4983	0.28	+0.5
4,983,293	+		GFF4983	0.28	+1.0
4,983,293	+		GFF4983	0.28	+0.1
4,983,301	-		GFF4983	0.28	+1.4
4,983,310	+		GFF4983	0.29	-0.8
4,983,318	-		GFF4983	0.29	-0.0
4,983,327	+		GFF4983	0.29	-0.1
4,983,345	-		GFF4983	0.30	+2.1
4,983,349	+		GFF4983	0.30	+1.1
4,983,357	-		GFF4983	0.30	+0.6
4,983,359	-		GFF4983	0.30	-0.6
4,983,367	-		GFF4983	0.31	+0.4
4,983,379	-		GFF4983	0.31	+0.9
4,983,379	-		GFF4983	0.31	+0.7
4,983,381	-		GFF4983	0.31	+0.5
4,983,393	-		GFF4983	0.32	-1.7
4,983,393	-		GFF4983	0.32	+0.4
4,983,413	+		GFF4983	0.32	-0.1
4,983,426	-		GFF4983	0.33	-0.4
4,983,522	-		GFF4983	0.36	-0.5
4,983,527	-		GFF4983	0.36	+0.9
4,983,527	-		GFF4983	0.36	+0.4
4,983,529	+		GFF4983	0.36	-0.8
4,983,566	-		GFF4983	0.38	-0.1
4,983,569	-		GFF4983	0.38	+1.5
4,983,580	-		GFF4983	0.38	+1.2
4,983,596	+		GFF4983	0.39	+0.0
4,983,604	-		GFF4983	0.39	+0.5
4,983,615	-		GFF4983	0.39	+0.0
4,983,615	-		GFF4983	0.39	-0.9
4,983,615	-		GFF4983	0.39	+0.3
4,983,615	-		GFF4983	0.39	+1.3
4,983,655	+		GFF4983	0.41	-1.7
4,983,661	+		GFF4983	0.41	+1.8
4,983,662	-		GFF4983	0.41	+0.1
4,983,680	+		GFF4983	0.42	-0.0
4,983,684	-		GFF4983	0.42	+0.1
4,983,684	-		GFF4983	0.42	-1.0
4,983,718	-		GFF4983	0.43	-0.9
4,983,737	-		GFF4983	0.44	-0.1
4,983,741	+		GFF4983	0.44	+0.3
4,983,776	+		GFF4983	0.45	-0.1
4,983,776	-		GFF4983	0.45	-0.1
4,983,784	-		GFF4983	0.45	+0.3
4,983,784	-		GFF4983	0.45	+0.4
4,983,792	-		GFF4983	0.46	+0.7
4,983,846	+		GFF4983	0.48	-0.5
4,983,866	-		GFF4983	0.48	+0.7
4,983,869	-		GFF4983	0.48	+0.0
4,983,885	-		GFF4983	0.49	+0.2
4,983,890	-		GFF4983	0.49	+1.3
4,983,912	+		GFF4983	0.50	+0.4
4,983,925	+		GFF4983	0.50	+0.7
4,983,930	+		GFF4983	0.51	-0.3
4,983,940	+		GFF4983	0.51	+0.9
4,983,948	-		GFF4983	0.51	-1.5
4,983,949	-		GFF4983	0.51	-0.8
4,983,955	+		GFF4983	0.51	+0.9
4,983,960	+		GFF4983	0.52	-1.3
4,983,960	+		GFF4983	0.52	-1.0
4,983,960	-		GFF4983	0.52	+0.3
4,983,966	+		GFF4983	0.52	+0.6
4,983,994	-		GFF4983	0.53	+1.5
4,984,003	+		GFF4983	0.53	+0.3
4,984,011	-		GFF4983	0.53	-1.6
4,984,011	-		GFF4983	0.53	-0.9
4,984,011	-		GFF4983	0.53	-0.7
4,984,018	+		GFF4983	0.54	+0.9
4,984,018	+		GFF4983	0.54	-0.8
4,984,018	+		GFF4983	0.54	-0.2
4,984,018	+		GFF4983	0.54	-2.1
4,984,023	+		GFF4983	0.54	+0.1
4,984,026	-		GFF4983	0.54	+0.8
4,984,026	-		GFF4983	0.54	+0.8
4,984,026	-		GFF4983	0.54	+1.7
4,984,026	-		GFF4983	0.54	-0.7
4,984,031	-		GFF4983	0.54	-0.6
4,984,031	-		GFF4983	0.54	+0.6
4,984,031	-		GFF4983	0.54	+0.5
4,984,031	-		GFF4983	0.54	-0.4
4,984,031	-		GFF4983	0.54	-1.0
4,984,034	-		GFF4983	0.54	-0.3
4,984,048	+		GFF4983	0.55	-1.3
4,984,050	-		GFF4983	0.55	+0.5
4,984,094	+		GFF4983	0.56	+0.0
4,984,126	+		GFF4983	0.57	-1.3
4,984,126	+		GFF4983	0.57	-0.4
4,984,126	+		GFF4983	0.57	+0.1
4,984,134	-		GFF4983	0.58	+0.2
4,984,136	+		GFF4983	0.58	-1.8
4,984,136	+		GFF4983	0.58	+0.7
4,984,136	+		GFF4983	0.58	+0.0
4,984,140	-		GFF4983	0.58	+1.0
4,984,156	-		GFF4983	0.59	+0.9
4,984,188	+		GFF4983	0.60	+0.2
4,984,188	+		GFF4983	0.60	+0.9
4,984,188	+		GFF4983	0.60	-1.3
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4,984,347	-		GFF4983	0.65	-1.1
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4,984,487	+		GFF4983	0.70	-2.0
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4,984,487	+		GFF4983	0.70	-0.3
4,984,487	+		GFF4983	0.70	+0.7
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4,984,517	+		GFF4983	0.71	+0.2
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4,984,553	-		GFF4983	0.73	+0.1
4,984,569	+		GFF4983	0.73	-1.1
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4,984,679	+		GFF4983	0.77	-0.1
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4,985,032	+		GFF4983	0.90	-1.9
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4,985,032	+		GFF4983	0.90	+1.1
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4,985,061	+				+0.9
4,985,069	-				+1.1
4,985,069	-				+0.4
4,985,069	-				+0.1
4,985,069	-				-0.5
4,985,074	-				+0.4
4,985,086	-				-0.2
4,985,103	+				+1.5
4,985,111	+				+2.1
4,985,118	-				+0.9
4,985,166	-				+0.8
4,985,182	-				+0.2
4,985,182	-				+1.5
4,985,197	+				-0.2
4,985,197	+				+0.4
4,985,197	+				+0.0
4,985,212	-				-1.3
4,985,241	+				+0.3
4,985,247	-				+0.4
4,985,248	-				-1.0
4,985,250	+				+0.7
4,985,250	+				-0.5
4,985,262	-				+0.5
4,985,275	+				-1.0
4,985,277	-				-1.5
4,985,283	-				+1.4
4,985,319	-				+1.5
4,985,329	+				+1.1
4,985,329	+				+0.0
4,985,347	+				+1.1
4,985,347	+				+0.6
4,985,360	-				+1.2
4,985,377	+				+0.1
4,985,378	+				-1.6
4,985,385	+				-1.1
4,985,386	-				-1.6
4,985,386	-				-0.1
4,985,386	-				-0.2
4,985,387	+				-1.7
4,985,387	+				+0.6
4,985,393	-				+0.3
4,985,395	-				+0.3
4,985,415	+				+0.3
4,985,431	+				-0.2
4,985,432	-				-0.3
4,985,434	-				+0.7
4,985,453	-				+0.9
4,985,544	+				+0.9
4,985,544	+				-0.1
4,985,552	-				-0.9
4,985,552	-				-0.9
4,985,552	-				-2.1
4,985,600	+				+0.7
4,985,605	+				+0.6
4,985,608	-				-0.8
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4,985,738	-		GFF4984	0.29	-1.3
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4,985,868	+		GFF4984	0.52	+1.2
4,985,868	+		GFF4984	0.52	+2.3
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4,986,120	-				+0.9
4,986,163	-				+0.5
4,986,164	+				+0.6
4,986,172	-				+0.7
4,986,176	+				+0.7
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4,986,269	+				+0.4
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4,986,310	+				+1.1
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