Strain Fitness in Sphingobium sp. HT1-2 around GFF495

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF494 and GFF495 overlap by 8 nucleotidesGFF495 and GFF496 are separated by 208 nucleotidesGFF496 and GFF497 are separated by 11 nucleotides GFF494 - GAF domain/GGDEF domain/EAL domain protein, at 492,158 to 493,675 GFF494 GFF495 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7), at 493,668 to 494,951 GFF495 GFF496 - hypothetical protein, at 495,160 to 495,897 GFF496 GFF497 - HNH endonuclease family protein, at 495,909 to 496,475 GFF497 Position (kb) 493 494 495Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 492.678 kb on - strand, within GFF494at 492.679 kb on - strand, within GFF494at 492.709 kb on + strand, within GFF494at 492.709 kb on + strand, within GFF494at 492.751 kb on + strand, within GFF494at 492.751 kb on + strand, within GFF494at 492.765 kb on + strand, within GFF494at 492.765 kb on + strand, within GFF494at 492.775 kb on + strand, within GFF494at 492.775 kb on + strand, within GFF494at 492.775 kb on + strand, within GFF494at 492.783 kb on - strand, within GFF494at 492.783 kb on - strand, within GFF494at 492.838 kb on - strand, within GFF494at 492.841 kb on + strand, within GFF494at 492.938 kb on - strand, within GFF494at 492.963 kb on + strand, within GFF494at 492.963 kb on + strand, within GFF494at 492.963 kb on + strand, within GFF494at 492.963 kb on + strand, within GFF494at 492.963 kb on + strand, within GFF494at 492.968 kb on + strand, within GFF494at 492.970 kb on - strand, within GFF494at 492.971 kb on - strand, within GFF494at 492.971 kb on - strand, within GFF494at 492.971 kb on - strand, within GFF494at 492.971 kb on - strand, within GFF494at 492.971 kb on - strand, within GFF494at 492.971 kb on - strand, within GFF494at 492.971 kb on - strand, within GFF494at 492.971 kb on - strand, within GFF494at 492.981 kb on + strand, within GFF494at 492.981 kb on - strand, within GFF494at 492.981 kb on - strand, within GFF494at 492.989 kb on - strand, within GFF494at 492.994 kb on - strand, within GFF494at 492.994 kb on - strand, within GFF494at 492.995 kb on + strand, within GFF494at 492.995 kb on + strand, within GFF494at 493.039 kb on + strand, within GFF494at 493.039 kb on + strand, within GFF494at 493.039 kb on + strand, within GFF494at 493.039 kb on + strand, within GFF494at 493.039 kb on + strand, within GFF494at 493.039 kb on + strand, within GFF494at 493.039 kb on + strand, within GFF494at 493.039 kb on + strand, within GFF494at 493.042 kb on - strand, within GFF494at 493.047 kb on - strand, within GFF494at 493.047 kb on - strand, within GFF494at 493.047 kb on - strand, within GFF494at 493.047 kb on - strand, within GFF494at 493.047 kb on - strand, within GFF494at 493.047 kb on - strand, within GFF494at 493.047 kb on - strand, within GFF494at 493.047 kb on - strand, within GFF494at 493.047 kb on - strand, within GFF494at 493.047 kb on - strand, within GFF494at 493.084 kb on + strand, within GFF494at 493.106 kb on - strand, within GFF494at 493.110 kb on + strand, within GFF494at 493.110 kb on + strand, within GFF494at 493.110 kb on + strand, within GFF494at 493.110 kb on + strand, within GFF494at 493.110 kb on + strand, within GFF494at 493.110 kb on + strand, within GFF494at 493.117 kb on - strand, within GFF494at 493.118 kb on - strand, within GFF494at 493.118 kb on - strand, within GFF494at 493.118 kb on - strand, within GFF494at 493.118 kb on - strand, within GFF494at 493.118 kb on - strand, within GFF494at 493.130 kb on - strand, within GFF494at 493.177 kb on - strand, within GFF494at 493.215 kb on + strand, within GFF494at 493.253 kb on - strand, within GFF494at 493.262 kb on + strand, within GFF494at 493.262 kb on + strand, within GFF494at 493.267 kb on + strand, within GFF494at 493.270 kb on - strand, within GFF494at 493.279 kb on + strand, within GFF494at 493.284 kb on + strand, within GFF494at 493.292 kb on - strand, within GFF494at 493.292 kb on - strand, within GFF494at 493.301 kb on - strand, within GFF494at 493.323 kb on + strand, within GFF494at 493.331 kb on - strand, within GFF494at 493.341 kb on + strand, within GFF494at 493.368 kb on + strand, within GFF494at 493.376 kb on - strand, within GFF494at 493.376 kb on - strand, within GFF494at 493.376 kb on - strand, within GFF494at 493.376 kb on - strand, within GFF494at 493.378 kb on + strand, within GFF494at 493.418 kb on - strand, within GFF494at 493.419 kb on - strand, within GFF494at 493.439 kb on + strand, within GFF494at 493.445 kb on + strand, within GFF494at 493.452 kb on - strand, within GFF494at 493.457 kb on + strand, within GFF494at 493.457 kb on + strand, within GFF494at 493.465 kb on - strand, within GFF494at 493.465 kb on - strand, within GFF494at 493.465 kb on - strand, within GFF494at 493.484 kb on - strand, within GFF494at 493.491 kb on + strand, within GFF494at 493.491 kb on + strand, within GFF494at 493.499 kb on - strand, within GFF494at 493.524 kb on - strandat 493.524 kb on - strandat 493.524 kb on - strandat 493.524 kb on - strandat 493.524 kb on - strandat 493.524 kb on - strandat 493.524 kb on - strandat 493.533 kb on + strandat 493.533 kb on + strandat 493.541 kb on - strandat 493.543 kb on - strandat 493.557 kb on + strandat 493.565 kb on - strandat 493.577 kb on + strandat 493.580 kb on + strandat 493.665 kb on + strandat 493.675 kb on + strandat 493.675 kb on + strandat 493.683 kb on - strandat 495.067 kb on + strandat 495.088 kb on - strandat 495.102 kb on + strandat 495.155 kb on + strandat 495.162 kb on - strandat 495.200 kb on - strandat 495.208 kb on - strandat 495.237 kb on - strand, within GFF496at 495.274 kb on + strand, within GFF496at 495.287 kb on + strand, within GFF496at 495.305 kb on - strand, within GFF496at 495.328 kb on + strand, within GFF496at 495.328 kb on + strand, within GFF496at 495.328 kb on + strand, within GFF496at 495.344 kb on + strand, within GFF496at 495.344 kb on + strand, within GFF496at 495.344 kb on + strand, within GFF496at 495.347 kb on - strand, within GFF496at 495.352 kb on - strand, within GFF496at 495.352 kb on - strand, within GFF496at 495.352 kb on - strand, within GFF496at 495.352 kb on - strand, within GFF496at 495.411 kb on + strand, within GFF496at 495.419 kb on - strand, within GFF496at 495.424 kb on - strand, within GFF496at 495.424 kb on - strand, within GFF496at 495.429 kb on - strand, within GFF496at 495.433 kb on + strand, within GFF496at 495.433 kb on + strand, within GFF496at 495.444 kb on - strand, within GFF496at 495.462 kb on + strand, within GFF496at 495.462 kb on + strand, within GFF496at 495.464 kb on - strand, within GFF496at 495.485 kb on + strand, within GFF496at 495.490 kb on + strand, within GFF496at 495.493 kb on - strand, within GFF496at 495.519 kb on - strand, within GFF496at 495.534 kb on + strand, within GFF496at 495.537 kb on - strand, within GFF496at 495.546 kb on + strand, within GFF496at 495.554 kb on - strand, within GFF496at 495.554 kb on - strand, within GFF496at 495.599 kb on - strand, within GFF496at 495.599 kb on - strand, within GFF496at 495.599 kb on - strand, within GFF496at 495.603 kb on + strand, within GFF496at 495.616 kb on - strand, within GFF496at 495.617 kb on - strand, within GFF496at 495.620 kb on + strand, within GFF496at 495.620 kb on + strand, within GFF496at 495.620 kb on + strand, within GFF496at 495.620 kb on + strand, within GFF496at 495.620 kb on + strand, within GFF496at 495.627 kb on - strand, within GFF496at 495.631 kb on - strand, within GFF496at 495.637 kb on + strand, within GFF496at 495.648 kb on + strand, within GFF496at 495.669 kb on - strand, within GFF496at 495.680 kb on + strand, within GFF496at 495.688 kb on - strand, within GFF496at 495.706 kb on + strand, within GFF496at 495.727 kb on - strand, within GFF496at 495.742 kb on - strand, within GFF496at 495.747 kb on - strand, within GFF496at 495.810 kb on + strand, within GFF496at 495.810 kb on + strand, within GFF496at 495.816 kb on - strand, within GFF496at 495.818 kb on - strand, within GFF496at 495.827 kb on - strandat 495.832 kb on - strandat 495.832 kb on - strandat 495.832 kb on - strandat 495.832 kb on - strandat 495.862 kb on + strandat 495.862 kb on + strandat 495.868 kb on + strandat 495.868 kb on + strandat 495.868 kb on + strandat 495.868 kb on + strandat 495.868 kb on + strandat 495.868 kb on + strandat 495.870 kb on - strandat 495.876 kb on - strandat 495.876 kb on - strandat 495.876 kb on - strandat 495.876 kb on - strandat 495.876 kb on - strandat 495.876 kb on - strandat 495.907 kb on + strandat 495.907 kb on + strandat 495.907 kb on + strandat 495.912 kb on + strandat 495.912 kb on + strandat 495.915 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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492,678 - GFF494 0.34 +0.1
492,679 - GFF494 0.34 -0.4
492,709 + GFF494 0.36 -1.0
492,709 + GFF494 0.36 -1.6
492,751 + GFF494 0.39 +0.1
492,751 + GFF494 0.39 -1.1
492,765 + GFF494 0.40 -0.9
492,765 + GFF494 0.40 -1.6
492,775 + GFF494 0.41 -0.3
492,775 + GFF494 0.41 -0.4
492,775 + GFF494 0.41 -1.3
492,783 - GFF494 0.41 -0.1
492,783 - GFF494 0.41 -1.9
492,838 - GFF494 0.45 +0.1
492,841 + GFF494 0.45 -0.0
492,938 - GFF494 0.51 -0.8
492,963 + GFF494 0.53 -0.2
492,963 + GFF494 0.53 -1.1
492,963 + GFF494 0.53 -1.3
492,963 + GFF494 0.53 -1.1
492,963 + GFF494 0.53 -0.2
492,968 + GFF494 0.53 -1.6
492,970 - GFF494 0.53 +0.1
492,971 - GFF494 0.54 -0.2
492,971 - GFF494 0.54 -0.4
492,971 - GFF494 0.54 -0.7
492,971 - GFF494 0.54 -0.3
492,971 - GFF494 0.54 -1.0
492,971 - GFF494 0.54 -1.7
492,971 - GFF494 0.54 -0.2
492,971 - GFF494 0.54 -1.5
492,981 + GFF494 0.54 +0.0
492,981 - GFF494 0.54 -1.3
492,981 - GFF494 0.54 -0.1
492,989 - GFF494 0.55 -0.9
492,994 - GFF494 0.55 -2.0
492,994 - GFF494 0.55 -2.5
492,995 + GFF494 0.55 +0.8
492,995 + GFF494 0.55 -0.3
493,039 + GFF494 0.58 -0.2
493,039 + GFF494 0.58 -0.1
493,039 + GFF494 0.58 +1.1
493,039 + GFF494 0.58 -0.4
493,039 + GFF494 0.58 -0.2
493,039 + GFF494 0.58 -0.6
493,039 + GFF494 0.58 +1.1
493,039 + GFF494 0.58 -1.5
493,042 - GFF494 0.58 +0.3
493,047 - GFF494 0.59 +0.5
493,047 - GFF494 0.59 -0.3
493,047 - GFF494 0.59 +0.5
493,047 - GFF494 0.59 -0.7
493,047 - GFF494 0.59 -1.5
493,047 - GFF494 0.59 +0.1
493,047 - GFF494 0.59 -1.2
493,047 - GFF494 0.59 -0.3
493,047 - GFF494 0.59 +0.2
493,047 - GFF494 0.59 -0.7
493,084 + GFF494 0.61 +1.1
493,106 - GFF494 0.62 -0.8
493,110 + GFF494 0.63 -1.1
493,110 + GFF494 0.63 +0.5
493,110 + GFF494 0.63 -1.9
493,110 + GFF494 0.63 -1.0
493,110 + GFF494 0.63 -1.1
493,110 + GFF494 0.63 -0.6
493,117 - GFF494 0.63 -0.1
493,118 - GFF494 0.63 +0.4
493,118 - GFF494 0.63 +0.9
493,118 - GFF494 0.63 -0.5
493,118 - GFF494 0.63 -0.3
493,118 - GFF494 0.63 -0.3
493,130 - GFF494 0.64 +0.4
493,177 - GFF494 0.67 +0.6
493,215 + GFF494 0.70 -3.0
493,253 - GFF494 0.72 -0.8
493,262 + GFF494 0.73 +1.0
493,262 + GFF494 0.73 -2.0
493,267 + GFF494 0.73 -0.1
493,270 - GFF494 0.73 -0.2
493,279 + GFF494 0.74 +0.1
493,284 + GFF494 0.74 +1.5
493,292 - GFF494 0.75 +0.9
493,292 - GFF494 0.75 -2.6
493,301 - GFF494 0.75 +0.3
493,323 + GFF494 0.77 -0.5
493,331 - GFF494 0.77 +0.7
493,341 + GFF494 0.78 -2.8
493,368 + GFF494 0.80 -0.4
493,376 - GFF494 0.80 -0.5
493,376 - GFF494 0.80 +0.4
493,376 - GFF494 0.80 -0.9
493,376 - GFF494 0.80 +0.3
493,378 + GFF494 0.80 -2.8
493,418 - GFF494 0.83 -1.6
493,419 - GFF494 0.83 +0.1
493,439 + GFF494 0.84 +0.4
493,445 + GFF494 0.85 +0.3
493,452 - GFF494 0.85 +0.2
493,457 + GFF494 0.86 -1.3
493,457 + GFF494 0.86 +0.4
493,465 - GFF494 0.86 -0.3
493,465 - GFF494 0.86 +0.4
493,465 - GFF494 0.86 -1.2
493,484 - GFF494 0.87 +0.9
493,491 + GFF494 0.88 +0.3
493,491 + GFF494 0.88 -0.3
493,499 - GFF494 0.88 +0.3
493,524 - +0.3
493,524 - -1.0
493,524 - -0.1
493,524 - -1.9
493,524 - +0.2
493,524 - +0.4
493,524 - +1.2
493,533 + -0.9
493,533 + -1.1
493,541 - -0.5
493,543 - -0.6
493,557 + -0.4
493,565 - +0.8
493,577 + -2.8
493,580 + -1.5
493,665 + +1.2
493,675 + -1.0
493,675 + -1.3
493,683 - -1.5
495,067 + +1.2
495,088 - -1.1
495,102 + -0.5
495,155 + -0.5
495,162 - +0.1
495,200 - -0.4
495,208 - +0.3
495,237 - GFF496 0.10 -0.5
495,274 + GFF496 0.15 -0.4
495,287 + GFF496 0.17 -0.5
495,305 - GFF496 0.20 -0.8
495,328 + GFF496 0.23 +0.5
495,328 + GFF496 0.23 -0.2
495,328 + GFF496 0.23 +0.1
495,344 + GFF496 0.25 +1.4
495,344 + GFF496 0.25 +0.1
495,344 + GFF496 0.25 -1.1
495,347 - GFF496 0.25 +0.8
495,352 - GFF496 0.26 -0.0
495,352 - GFF496 0.26 -1.4
495,352 - GFF496 0.26 +1.9
495,352 - GFF496 0.26 -1.6
495,411 + GFF496 0.34 -1.1
495,419 - GFF496 0.35 -1.7
495,424 - GFF496 0.36 -2.2
495,424 - GFF496 0.36 -0.6
495,429 - GFF496 0.36 +0.2
495,433 + GFF496 0.37 -0.1
495,433 + GFF496 0.37 -0.4
495,444 - GFF496 0.38 +1.2
495,462 + GFF496 0.41 -1.7
495,462 + GFF496 0.41 -0.2
495,464 - GFF496 0.41 -0.8
495,485 + GFF496 0.44 +0.9
495,490 + GFF496 0.45 -0.4
495,493 - GFF496 0.45 -0.9
495,519 - GFF496 0.49 -1.9
495,534 + GFF496 0.51 -2.2
495,537 - GFF496 0.51 -1.2
495,546 + GFF496 0.52 -1.1
495,554 - GFF496 0.53 -3.0
495,554 - GFF496 0.53 +0.1
495,599 - GFF496 0.59 -0.3
495,599 - GFF496 0.59 +0.7
495,599 - GFF496 0.59 -0.1
495,603 + GFF496 0.60 -1.4
495,616 - GFF496 0.62 +0.4
495,617 - GFF496 0.62 -2.5
495,620 + GFF496 0.62 -1.0
495,620 + GFF496 0.62 +0.5
495,620 + GFF496 0.62 +1.6
495,620 + GFF496 0.62 -0.3
495,620 + GFF496 0.62 -1.1
495,627 - GFF496 0.63 -0.1
495,631 - GFF496 0.64 -0.6
495,637 + GFF496 0.65 -0.5
495,648 + GFF496 0.66 +0.2
495,669 - GFF496 0.69 -1.5
495,680 + GFF496 0.70 +1.6
495,688 - GFF496 0.72 -0.5
495,706 + GFF496 0.74 +1.2
495,727 - GFF496 0.77 +0.3
495,742 - GFF496 0.79 +0.4
495,747 - GFF496 0.80 -2.0
495,810 + GFF496 0.88 -2.0
495,810 + GFF496 0.88 -1.3
495,816 - GFF496 0.89 -0.1
495,818 - GFF496 0.89 +1.1
495,827 - +0.4
495,832 - +0.2
495,832 - -0.2
495,832 - -1.2
495,832 - -1.5
495,862 + -0.3
495,862 + +0.3
495,868 + -0.1
495,868 + +0.4
495,868 + -0.7
495,868 + -1.0
495,868 + +0.4
495,868 + -1.2
495,870 - +0.3
495,876 - -1.4
495,876 - -0.2
495,876 - +1.2
495,876 - +0.9
495,876 - -1.9
495,876 - -0.1
495,907 + +0.6
495,907 + +0.3
495,907 + -1.3
495,912 + +0.4
495,912 + +0.9
495,915 - -0.6

Or see this region's nucleotide sequence