Strain Fitness in Sphingobium sp. HT1-2 around GFF4946

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,937,835	-				-0.1
4,937,851	-				-0.6
4,937,885	-				-1.4
4,937,896	-				+1.2
4,937,999	-				-1.1
4,938,009	+				-1.1
4,938,032	+				-0.3
4,938,117	+				-0.3
4,938,146	-		GFF4946	0.10	+0.8
4,938,183	+		GFF4946	0.13	-1.2
4,938,183	+		GFF4946	0.13	-0.8
4,938,270	+		GFF4946	0.18	-0.6
4,938,280	+		GFF4946	0.19	+0.7
4,938,280	+		GFF4946	0.19	+1.5
4,938,280	+		GFF4946	0.19	-1.1
4,938,280	+		GFF4946	0.19	-1.0
4,938,280	+		GFF4946	0.19	-0.7
4,938,280	+		GFF4946	0.19	-0.1
4,938,280	+		GFF4946	0.19	-0.8
4,938,280	+		GFF4946	0.19	-1.3
4,938,288	-		GFF4946	0.20	-0.2
4,938,288	-		GFF4946	0.20	+0.1
4,938,288	-		GFF4946	0.20	-2.9
4,938,288	-		GFF4946	0.20	+0.1
4,938,288	-		GFF4946	0.20	-1.2
4,938,290	+		GFF4946	0.20	-0.9
4,938,295	+		GFF4946	0.20	+1.3
4,938,295	+		GFF4946	0.20	-1.2
4,938,298	-		GFF4946	0.20	-2.4
4,938,298	-		GFF4946	0.20	-0.7
4,938,313	-		GFF4946	0.21	+0.4
4,938,316	+		GFF4946	0.22	-1.1
4,938,321	+		GFF4946	0.22	-1.6
4,938,321	+		GFF4946	0.22	-0.2
4,938,321	+		GFF4946	0.22	+0.1
4,938,321	+		GFF4946	0.22	+0.6
4,938,321	+		GFF4946	0.22	+0.3
4,938,321	+		GFF4946	0.22	+0.1
4,938,321	+		GFF4946	0.22	+0.2
4,938,326	+		GFF4946	0.22	-0.1
4,938,326	+		GFF4946	0.22	+0.4
4,938,326	+		GFF4946	0.22	-0.4
4,938,329	-		GFF4946	0.22	-1.1
4,938,334	-		GFF4946	0.23	-0.4
4,938,334	-		GFF4946	0.23	+0.0
4,938,334	-		GFF4946	0.23	+1.4
4,938,362	+		GFF4946	0.25	-1.7
4,938,375	+		GFF4946	0.25	-0.5
4,938,375	+		GFF4946	0.25	-1.2
4,938,378	-		GFF4946	0.26	-0.7
4,938,397	+		GFF4946	0.27	-0.2
4,938,407	+		GFF4946	0.28	+0.2
4,938,407	+		GFF4946	0.28	+1.4
4,938,407	+		GFF4946	0.28	+0.6
4,938,407	+		GFF4946	0.28	-1.6
4,938,415	-		GFF4946	0.28	-0.4
4,938,420	+		GFF4946	0.28	+0.2
4,938,428	-		GFF4946	0.29	-1.2
4,938,436	-		GFF4946	0.30	-0.5
4,938,438	+		GFF4946	0.30	+0.1
4,938,438	+		GFF4946	0.30	+0.5
4,938,438	+		GFF4946	0.30	-0.4
4,938,438	+		GFF4946	0.30	-0.7
4,938,438	+		GFF4946	0.30	-0.7
4,938,438	+		GFF4946	0.30	-1.3
4,938,446	-		GFF4946	0.30	+0.4
4,938,446	-		GFF4946	0.30	-0.6
4,938,446	-		GFF4946	0.30	+0.4
4,938,471	+		GFF4946	0.32	-2.2
4,938,471	-		GFF4946	0.32	+0.8
4,938,479	-		GFF4946	0.32	-0.1
4,938,479	-		GFF4946	0.32	+0.4
4,938,488	+		GFF4946	0.33	-1.7
4,938,488	+		GFF4946	0.33	+0.3
4,938,494	+		GFF4946	0.33	-0.1
4,938,495	-		GFF4946	0.33	-1.8
4,938,548	-		GFF4946	0.37	-0.7
4,938,558	-		GFF4946	0.38	+1.7
4,938,593	-		GFF4946	0.40	-0.1
4,938,616	+		GFF4946	0.42	-0.8
4,938,634	+		GFF4946	0.43	+0.3
4,938,677	+		GFF4946	0.46	+0.5
4,938,677	+		GFF4946	0.46	-1.6
4,938,677	+		GFF4946	0.46	+1.3
4,938,677	+		GFF4946	0.46	-0.9
4,938,677	+		GFF4946	0.46	-0.6
4,938,677	+		GFF4946	0.46	+0.4
4,938,684	+		GFF4946	0.46	-0.0
4,938,685	-		GFF4946	0.46	+1.5
4,938,685	-		GFF4946	0.46	+0.5
4,938,685	-		GFF4946	0.46	-0.2
4,938,685	-		GFF4946	0.46	-1.0
4,938,685	-		GFF4946	0.46	+0.5
4,938,685	-		GFF4946	0.46	+0.8
4,938,685	-		GFF4946	0.46	+0.6
4,938,685	-		GFF4946	0.46	-0.3
4,938,685	-		GFF4946	0.46	-0.1
4,938,692	-		GFF4946	0.47	+0.5
4,938,692	-		GFF4946	0.47	+0.1
4,938,779	+		GFF4946	0.52	+0.1
4,938,789	+		GFF4946	0.53	+0.1
4,938,805	-		GFF4946	0.54	+0.7
4,938,814	+		GFF4946	0.55	-2.5
4,938,838	-		GFF4946	0.56	-0.5
4,938,885	+		GFF4946	0.59	-0.4
4,938,898	+		GFF4946	0.60	-1.3
4,938,898	+		GFF4946	0.60	+0.5
4,938,906	-		GFF4946	0.61	-3.2
4,938,906	-		GFF4946	0.61	+0.7
4,938,906	-		GFF4946	0.61	-0.4
4,938,906	-		GFF4946	0.61	+0.1
4,938,918	+		GFF4946	0.62	+1.0
4,938,936	+		GFF4946	0.63	+1.7
4,938,963	+		GFF4946	0.65	-2.0
4,938,963	+		GFF4946	0.65	+1.1
4,938,963	+		GFF4946	0.65	-1.4
4,938,963	+		GFF4946	0.65	-0.3
4,938,963	+		GFF4946	0.65	-1.4
4,938,963	+		GFF4946	0.65	-1.1
4,938,968	+		GFF4946	0.65	-1.6
4,938,971	-		GFF4946	0.65	-0.0
4,938,971	-		GFF4946	0.65	-0.3
4,938,982	+		GFF4946	0.66	-0.6
4,939,031	+		GFF4946	0.69	+1.2
4,939,031	+		GFF4946	0.69	-0.5
4,939,031	+		GFF4946	0.69	-1.6
4,939,031	+		GFF4946	0.69	-0.3
4,939,036	+		GFF4946	0.70	-1.0
4,939,036	+		GFF4946	0.70	-0.1
4,939,036	+		GFF4946	0.70	-1.1
4,939,039	-		GFF4946	0.70	+0.4
4,939,041	+		GFF4946	0.70	+2.0
4,939,041	+		GFF4946	0.70	-0.7
4,939,044	-		GFF4946	0.70	-1.5
4,939,049	-		GFF4946	0.70	-0.3
4,939,049	-		GFF4946	0.70	-1.4
4,939,063	+		GFF4946	0.71	-0.7
4,939,067	-		GFF4946	0.72	-0.8
4,939,084	+		GFF4946	0.73	-0.9
4,939,126	+		GFF4946	0.76	-1.1
4,939,126	+		GFF4946	0.76	-1.7
4,939,129	-		GFF4946	0.76	-0.7
4,939,134	-		GFF4946	0.76	-0.9
4,939,134	-		GFF4946	0.76	+0.4
4,939,134	-		GFF4946	0.76	+0.5
4,939,134	-		GFF4946	0.76	-0.2
4,939,134	-		GFF4946	0.76	+0.7
4,939,134	-		GFF4946	0.76	-1.3
4,939,134	-		GFF4946	0.76	-0.1
4,939,134	-		GFF4946	0.76	-1.5
4,939,134	-		GFF4946	0.76	+0.5
4,939,144	+		GFF4946	0.77	+0.3
4,939,152	-		GFF4946	0.77	-0.6
4,939,152	-		GFF4946	0.77	-1.3
4,939,154	-		GFF4946	0.77	-1.1
4,939,154	-		GFF4946	0.77	-0.4
4,939,178	+		GFF4946	0.79	-0.2
4,939,178	+		GFF4946	0.79	+0.7
4,939,186	-		GFF4946	0.80	-0.3
4,939,205	+		GFF4946	0.81	-0.4
4,939,266	+		GFF4946	0.85	+0.9
4,939,328	+		GFF4946	0.89	+0.3
4,939,328	+		GFF4946	0.89	+0.1
4,939,328	+		GFF4946	0.89	+0.5
4,939,333	+		GFF4946	0.89	-0.8
4,939,336	-		GFF4946	0.90	+0.1
4,939,336	-		GFF4946	0.90	+1.0
4,939,336	-		GFF4946	0.90	+0.2
4,939,336	-		GFF4946	0.90	-0.4
4,939,336	-		GFF4946	0.90	-0.4
4,939,365	+				+0.2
4,939,365	+				-1.1
4,939,427	-				+0.1
4,939,456	-				-0.3
4,939,481	-				+0.4
4,939,481	-				-0.7
4,939,540	+				+0.5
4,939,540	+				-0.3
4,939,551	+				-0.1
4,939,578	+				-1.4
4,939,578	+				-1.1
4,939,583	+				-1.3
4,939,586	-				-1.1
4,939,586	-				-2.4
4,939,586	-				-1.5
4,939,601	+				-1.1
4,939,602	+				+0.2
4,939,604	-				-0.7
4,939,630	+				-1.3
4,939,647	+				-3.2
4,939,657	+		GFF4947	0.10	-0.6
4,939,661	-		GFF4947	0.10	-0.2
4,939,661	-		GFF4947	0.10	-3.1
4,939,670	-		GFF4947	0.11	-0.6
4,939,672	+		GFF4947	0.11	-0.1
4,939,694	+		GFF4947	0.13	-0.5
4,939,710	+		GFF4947	0.14	+0.0
4,939,716	-		GFF4947	0.15	-2.8
4,939,730	+		GFF4947	0.16	-2.9
4,939,738	-		GFF4947	0.17	-2.6
4,939,760	+		GFF4947	0.18	-1.6
4,939,760	+		GFF4947	0.18	-3.0
4,939,760	+		GFF4947	0.18	-2.4
4,939,760	+		GFF4947	0.18	-1.3
4,939,760	+		GFF4947	0.18	-2.1
4,939,763	-		GFF4947	0.19	-2.4
4,939,763	-		GFF4947	0.19	-2.7
4,939,765	+		GFF4947	0.19	-1.0
4,939,768	-		GFF4947	0.19	-2.0
4,939,768	-		GFF4947	0.19	-0.6
4,939,768	-		GFF4947	0.19	-0.5
4,939,773	-		GFF4947	0.19	-1.7
4,939,773	-		GFF4947	0.19	-1.4
4,939,809	-		GFF4947	0.22	-2.1
4,939,832	+		GFF4947	0.24	-2.0
4,939,872	-		GFF4947	0.27	-0.4
4,939,930	+		GFF4947	0.32	+0.3
4,939,936	+		GFF4947	0.33	-3.7
4,939,936	+		GFF4947	0.33	-2.6
4,939,944	-		GFF4947	0.33	-3.4
4,939,944	-		GFF4947	0.33	-2.1
4,939,944	-		GFF4947	0.33	-2.0
4,939,944	-		GFF4947	0.33	-1.7
4,939,945	-		GFF4947	0.33	-0.9
4,939,955	-		GFF4947	0.34	-0.4
4,939,958	+		GFF4947	0.34	-1.1
4,939,966	-		GFF4947	0.35	-1.1
4,939,967	+		GFF4947	0.35	-1.0
4,939,988	-		GFF4947	0.37	-1.8
4,940,001	-		GFF4947	0.38	-0.7
4,940,027	-		GFF4947	0.40	-2.4
4,940,074	+		GFF4947	0.44	-0.5
4,940,082	-		GFF4947	0.44	-2.0
4,940,083	+		GFF4947	0.44	-1.4
4,940,091	+		GFF4947	0.45	-1.3
4,940,120	-		GFF4947	0.47	-1.0
4,940,130	+		GFF4947	0.48	-3.1
4,940,130	+		GFF4947	0.48	-1.4
4,940,130	+		GFF4947	0.48	-1.1
4,940,138	-		GFF4947	0.49	-2.0
4,940,219	-		GFF4947	0.55	-2.6
4,940,234	-		GFF4947	0.57	-1.0
4,940,245	-		GFF4947	0.58	-2.7
4,940,249	+		GFF4947	0.58	-3.0
4,940,249	+		GFF4947	0.58	-0.7
4,940,249	+		GFF4947	0.58	-3.2
4,940,249	+		GFF4947	0.58	-1.6
4,940,249	+		GFF4947	0.58	-1.7
4,940,249	+		GFF4947	0.58	-1.1
4,940,249	-		GFF4947	0.58	-1.8
4,940,257	-		GFF4947	0.59	-2.6
4,940,257	-		GFF4947	0.59	-1.6
4,940,257	-		GFF4947	0.59	-0.9
4,940,257	-		GFF4947	0.59	-2.6
4,940,257	-		GFF4947	0.59	-0.6
4,940,257	-		GFF4947	0.59	-2.0
4,940,257	-		GFF4947	0.59	-1.4
4,940,257	-		GFF4947	0.59	-0.4
4,940,257	-		GFF4947	0.59	-1.2
4,940,257	-		GFF4947	0.59	-2.5
4,940,257	-		GFF4947	0.59	-2.6
4,940,280	-		GFF4947	0.60	-0.4
4,940,334	+		GFF4947	0.65	-2.6
4,940,334	+		GFF4947	0.65	-1.4
4,940,338	-		GFF4947	0.65	+0.2
4,940,398	+		GFF4947	0.70	-2.7
4,940,433	-		GFF4947	0.73	-1.7
4,940,445	+		GFF4947	0.74	-1.8
4,940,445	+		GFF4947	0.74	-2.6
4,940,445	+		GFF4947	0.74	-2.9
4,940,450	+		GFF4947	0.74	-3.1
4,940,455	+		GFF4947	0.74	-2.7
4,940,455	+		GFF4947	0.74	+0.5
4,940,455	+		GFF4947	0.74	-1.3
4,940,458	-		GFF4947	0.75	-3.6
4,940,458	-		GFF4947	0.75	-2.0
4,940,458	-		GFF4947	0.75	-1.6
4,940,463	-		GFF4947	0.75	+0.0
4,940,476	+		GFF4947	0.76	-0.6
4,940,476	+		GFF4947	0.76	-2.0
4,940,476	+		GFF4947	0.76	-1.1
4,940,476	+		GFF4947	0.76	-2.0
4,940,484	-		GFF4947	0.77	-2.2