Strain Fitness in Sphingobium sp. HT1-2 around GFF4912

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,903,182	+				+0.8
4,903,182	+				-0.9
4,903,196	-				-0.7
4,903,196	-				+0.6
4,903,202	-				-0.9
4,903,202	-				-2.4
4,903,208	-		GFF4911	0.11	-0.3
4,903,208	-		GFF4911	0.11	-0.6
4,903,226	-		GFF4911	0.13	-1.4
4,903,232	+		GFF4911	0.13	-0.9
4,903,239	+		GFF4911	0.14	+1.3
4,903,250	+		GFF4911	0.15	-1.4
4,903,250	+		GFF4911	0.15	-0.5
4,903,252	-		GFF4911	0.16	+0.1
4,903,258	-		GFF4911	0.16	-0.2
4,903,258	-		GFF4911	0.16	-3.2
4,903,258	-		GFF4911	0.16	-3.0
4,903,258	-		GFF4911	0.16	+0.2
4,903,276	+		GFF4911	0.18	+0.2
4,903,276	+		GFF4911	0.18	+1.5
4,903,276	+		GFF4911	0.18	-0.5
4,903,281	+		GFF4911	0.19	-0.5
4,903,286	+		GFF4911	0.20	-2.1
4,903,294	-		GFF4911	0.21	-0.1
4,903,294	-		GFF4911	0.21	+0.9
4,903,294	-		GFF4911	0.21	-2.1
4,903,311	+		GFF4911	0.22	-0.7
4,903,311	+		GFF4911	0.22	+0.5
4,903,311	+		GFF4911	0.22	+0.2
4,903,311	+		GFF4911	0.22	-0.8
4,903,311	+		GFF4911	0.22	-0.4
4,903,319	-		GFF4911	0.23	+0.1
4,903,319	-		GFF4911	0.23	+0.2
4,903,319	-		GFF4911	0.23	-0.9
4,903,319	-		GFF4911	0.23	+1.0
4,903,322	+		GFF4911	0.24	-1.2
4,903,356	+		GFF4911	0.28	-2.0
4,903,356	+		GFF4911	0.28	-0.8
4,903,359	+		GFF4911	0.28	+0.8
4,903,367	-		GFF4911	0.29	+0.0
4,903,475	+		GFF4911	0.41	-1.0
4,903,475	+		GFF4911	0.41	-0.9
4,903,476	-		GFF4911	0.42	-0.7
4,903,519	+		GFF4911	0.46	+0.2
4,903,532	-		GFF4911	0.48	-0.9
4,903,532	-		GFF4911	0.48	-2.3
4,903,532	-		GFF4911	0.48	-0.2
4,903,534	+		GFF4911	0.48	-0.9
4,903,537	-		GFF4911	0.49	+0.8
4,903,537	-		GFF4911	0.49	-0.4
4,903,539	+		GFF4911	0.49	-1.4
4,903,539	+		GFF4911	0.49	-1.8
4,903,542	-		GFF4911	0.49	-1.0
4,903,542	-		GFF4911	0.49	-0.9
4,903,547	-		GFF4911	0.50	-1.5
4,903,554	+		GFF4911	0.51	-0.0
4,903,560	-		GFF4911	0.51	-2.7
4,903,575	+		GFF4911	0.53	-2.0
4,903,681	-		GFF4911	0.65	-0.5
4,903,686	-		GFF4911	0.66	-0.4
4,903,696	+		GFF4911	0.67	-0.0
4,903,696	+		GFF4911	0.67	-1.6
4,903,696	+		GFF4911	0.67	-1.6
4,903,696	+		GFF4911	0.67	-0.7
4,903,696	+		GFF4911	0.67	-0.3
4,903,702	-		GFF4911	0.68	+0.2
4,903,702	-		GFF4911	0.68	-2.0
4,903,704	-		GFF4911	0.68	-0.2
4,903,704	-		GFF4911	0.68	-0.5
4,903,704	-		GFF4911	0.68	-1.1
4,903,704	-		GFF4911	0.68	-2.3
4,903,704	-		GFF4911	0.68	-1.4
4,903,704	-		GFF4911	0.68	-1.9
4,903,704	-		GFF4911	0.68	-1.4
4,903,704	-		GFF4911	0.68	+0.4
4,903,704	-		GFF4911	0.68	-0.4
4,903,710	+		GFF4911	0.69	-0.5
4,903,710	+		GFF4911	0.69	-0.5
4,903,710	+		GFF4911	0.69	-1.5
4,903,710	+		GFF4911	0.69	-0.7
4,903,715	+		GFF4911	0.69	-1.1
4,903,715	+		GFF4911	0.69	-0.4
4,903,718	-		GFF4911	0.69	-1.1
4,903,732	+		GFF4911	0.71	-1.4
4,903,732	+		GFF4911	0.71	-2.2
4,903,732	+		GFF4911	0.71	-1.7
4,903,740	-		GFF4911	0.72	+0.7
4,903,740	-		GFF4911	0.72	-0.8
4,903,742	+		GFF4911	0.72	-0.3
4,903,745	-		GFF4911	0.73	-0.5
4,903,757	+		GFF4911	0.74	-0.7
4,903,790	+		GFF4911	0.78	-0.8
4,903,792	+		GFF4911	0.78	-1.7
4,903,799	+		GFF4911	0.79	+0.3
4,903,800	-		GFF4911	0.79	-0.5
4,903,800	-		GFF4911	0.79	-0.4
4,903,802	+		GFF4911	0.79	+0.2
4,903,812	+		GFF4911	0.80	-1.4
4,903,826	-		GFF4911	0.82	-1.9
4,903,828	+		GFF4911	0.82	-0.6
4,903,836	-		GFF4911	0.83	+0.0
4,903,836	-		GFF4911	0.83	-0.0
4,903,837	+		GFF4911	0.83	-0.4
4,903,841	+		GFF4911	0.84	-1.4
4,903,841	+		GFF4911	0.84	-2.1
4,903,843	-		GFF4911	0.84	+0.4
4,903,845	-		GFF4911	0.84	+0.0
4,903,849	-		GFF4911	0.85	-2.1
4,903,909	+				-0.4
4,903,927	+				-0.2
4,903,927	+				-1.1
4,903,974	-				-2.4
4,903,979	-				-1.5
4,903,987	+				+0.7
4,903,995	-				-1.4
4,904,012	-				-3.1
4,904,028	+				-0.5
4,904,050	-				-0.3
4,904,073	+				-1.1
4,904,073	+				-2.6
4,904,088	-				+0.7
4,904,094	-				-1.5
4,904,115	+				-0.1
4,904,115	+				-0.1
4,904,123	-				-0.6
4,904,125	-				+0.3
4,904,135	-				-0.3
4,904,135	-				-1.1
4,904,136	+				-1.4
4,904,137	+				-0.5
4,904,144	-				-0.5
4,904,146	+				-0.6
4,904,156	+				+0.2
4,904,164	-				-2.0
4,904,164	-				-0.9
4,904,165	+				-1.4
4,904,166	+				-0.4
4,904,168	-				-0.2
4,904,168	-				-0.4
4,904,173	-				-0.9
4,904,173	-				-0.3
4,904,173	-				-1.5
4,904,183	-				-1.7
4,904,195	+				-2.1
4,904,195	+				-0.3
4,904,200	+				-1.2
4,904,200	+				-0.4
4,904,200	+				-0.3
4,904,200	+				-1.2
4,904,200	+				-1.4
4,904,200	+				-0.8
4,904,200	+				-0.3
4,904,200	+				-0.6
4,904,200	+				-1.8
4,904,200	+				+0.8
4,904,208	-				-0.6
4,904,208	-				-1.0
4,904,208	-				-0.7
4,904,208	-				-0.4
4,904,208	-				-1.1
4,904,208	-				-0.2
4,904,248	+		GFF4912	0.14	-0.9
4,904,266	+		GFF4912	0.16	-0.8
4,904,268	+		GFF4912	0.16	-0.8
4,904,272	+		GFF4912	0.17	-0.0
4,904,285	+		GFF4912	0.18	-2.0
4,904,314	-		GFF4912	0.22	-1.1
4,904,324	-		GFF4912	0.23	-0.1
4,904,325	-		GFF4912	0.23	+0.1
4,904,331	+		GFF4912	0.24	-1.8
4,904,339	-		GFF4912	0.25	-0.1
4,904,352	+		GFF4912	0.27	+0.3
4,904,367	-		GFF4912	0.28	-0.9
4,904,386	+		GFF4912	0.31	-1.6
4,904,435	-		GFF4912	0.37	-0.2
4,904,457	+		GFF4912	0.39	+0.5
4,904,471	+		GFF4912	0.41	-2.1
4,904,471	+		GFF4912	0.41	-0.2
4,904,477	+		GFF4912	0.42	+0.6
4,904,486	+		GFF4912	0.43	-1.5
4,904,489	-		GFF4912	0.43	-0.2
4,904,507	+		GFF4912	0.45	+0.2
4,904,507	+		GFF4912	0.45	-2.4
4,904,507	+		GFF4912	0.45	+0.0
4,904,507	+		GFF4912	0.45	+0.9
4,904,507	+		GFF4912	0.45	-0.8
4,904,507	+		GFF4912	0.45	-1.2
4,904,514	-		GFF4912	0.46	-0.3
4,904,515	-		GFF4912	0.46	-2.8
4,904,515	-		GFF4912	0.46	-0.7
4,904,515	-		GFF4912	0.46	-0.4
4,904,515	-		GFF4912	0.46	+2.5
4,904,515	-		GFF4912	0.46	+0.1
4,904,515	-		GFF4912	0.46	+0.0
4,904,515	-		GFF4912	0.46	-1.1
4,904,517	+		GFF4912	0.47	-0.6
4,904,540	-		GFF4912	0.49	-0.7
4,904,540	-		GFF4912	0.49	+1.8
4,904,573	+		GFF4912	0.53	-0.5
4,904,573	-		GFF4912	0.53	+0.9
4,904,577	+		GFF4912	0.54	-0.8
4,904,577	+		GFF4912	0.54	-2.1
4,904,578	-		GFF4912	0.54	-0.4
4,904,585	-		GFF4912	0.55	-1.1
4,904,592	+		GFF4912	0.56	-0.8
4,904,609	-		GFF4912	0.58	-2.3
4,904,609	-		GFF4912	0.58	-1.2
4,904,630	-		GFF4912	0.60	+0.3
4,904,637	+		GFF4912	0.61	-1.5
4,904,637	+		GFF4912	0.61	-1.0
4,904,645	-		GFF4912	0.62	-0.9
4,904,654	+		GFF4912	0.63	-1.3
4,904,654	+		GFF4912	0.63	-0.8
4,904,667	-		GFF4912	0.65	-2.1
4,904,723	+		GFF4912	0.72	+1.0
4,904,729	-		GFF4912	0.72	-0.1
4,904,752	+		GFF4912	0.75	-0.3
4,904,760	-		GFF4912	0.76	+0.0
4,904,770	+		GFF4912	0.77	-0.3
4,904,777	-		GFF4912	0.78	-1.0
4,904,778	-		GFF4912	0.78	-0.2
4,904,798	+		GFF4912	0.81	-3.2
4,904,874	-				-0.9
4,904,874	-				-0.7
4,904,887	+				-0.1
4,904,891	+				-1.3
4,904,899	-				+0.6
4,904,929	-				-2.6
4,904,939	-				-0.3
4,904,940	+				-0.5
4,904,957	-				-0.6
4,904,959	+				+0.6
4,904,977	-				-1.9
4,904,983	-				-0.4
4,904,985	+				-1.1
4,904,988	-				+1.2
4,904,998	+				+0.5
4,905,015	+				+0.1
4,905,023	+				+0.8
4,905,023	-				-2.5
4,905,028	-				-2.0
4,905,072	+				-2.1
4,905,072	+				-0.8
4,905,074	-				-0.1
4,905,080	-		GFF4913	0.10	+0.2
4,905,080	-		GFF4913	0.10	-1.4
4,905,080	-		GFF4913	0.10	-1.0
4,905,152	+		GFF4913	0.17	-0.5
4,905,199	+		GFF4913	0.22	-0.5
4,905,211	+		GFF4913	0.23	-1.3
4,905,214	-		GFF4913	0.23	-0.2
4,905,214	-		GFF4913	0.23	-0.3
4,905,220	+		GFF4913	0.24	-1.5
4,905,220	+		GFF4913	0.24	-0.7
4,905,250	-		GFF4913	0.27	+1.0
4,905,267	+		GFF4913	0.29	+0.9
4,905,275	-		GFF4913	0.29	+0.1
4,905,275	-		GFF4913	0.29	+0.2
4,905,323	-		GFF4913	0.34	-2.0
4,905,323	-		GFF4913	0.34	-2.0
4,905,343	+		GFF4913	0.36	-0.5
4,905,348	+		GFF4913	0.37	-0.8
4,905,352	-		GFF4913	0.37	+0.6
4,905,377	-		GFF4913	0.39	+0.0
4,905,397	+		GFF4913	0.41	-0.6
4,905,397	+		GFF4913	0.41	-1.3
4,905,399	+		GFF4913	0.42	+0.0
4,905,414	+		GFF4913	0.43	-0.5
4,905,414	+		GFF4913	0.43	-0.2
4,905,414	+		GFF4913	0.43	+0.6
4,905,414	+		GFF4913	0.43	-2.5
4,905,414	+		GFF4913	0.43	-1.7
4,905,414	+		GFF4913	0.43	-0.1
4,905,414	+		GFF4913	0.43	-0.4
4,905,414	+		GFF4913	0.43	-0.7
4,905,422	-		GFF4913	0.44	-0.1
4,905,422	-		GFF4913	0.44	-0.2
4,905,422	-		GFF4913	0.44	-2.6
4,905,422	-		GFF4913	0.44	-0.8
4,905,422	-		GFF4913	0.44	-0.4
4,905,422	-		GFF4913	0.44	-1.9
4,905,422	-		GFF4913	0.44	+1.0
4,905,424	+		GFF4913	0.44	-2.3
4,905,424	+		GFF4913	0.44	+0.5
4,905,432	-		GFF4913	0.45	+0.3
4,905,433	+		GFF4913	0.45	+0.3
4,905,433	+		GFF4913	0.45	-1.3
4,905,441	-		GFF4913	0.46	+0.1
4,905,461	+		GFF4913	0.48	-0.5
4,905,461	+		GFF4913	0.48	-0.7
4,905,482	-		GFF4913	0.50	-1.1
4,905,497	+		GFF4913	0.51	-2.6
4,905,497	+		GFF4913	0.51	-0.7
4,905,505	-		GFF4913	0.52	-2.4
4,905,505	-		GFF4913	0.52	-0.5
4,905,505	-		GFF4913	0.52	-0.5
4,905,505	-		GFF4913	0.52	-1.2
4,905,512	+		GFF4913	0.53	-1.3
4,905,512	+		GFF4913	0.53	-1.8
4,905,512	+		GFF4913	0.53	-1.7
4,905,520	-		GFF4913	0.54	-2.1
4,905,532	+		GFF4913	0.55	-0.8
4,905,538	+		GFF4913	0.55	-0.4
4,905,546	-		GFF4913	0.56	-0.6
4,905,570	+		GFF4913	0.58	-0.7
4,905,584	-		GFF4913	0.60	-1.4
4,905,584	-		GFF4913	0.60	-0.4
4,905,600	+		GFF4913	0.61	-0.7
4,905,600	+		GFF4913	0.61	-0.5
4,905,600	+		GFF4913	0.61	-2.1
4,905,600	+		GFF4913	0.61	-1.1
4,905,600	+		GFF4913	0.61	+0.8
4,905,600	+		GFF4913	0.61	-2.4
4,905,600	+		GFF4913	0.61	-0.5
4,905,608	-		GFF4913	0.62	-0.8
4,905,608	-		GFF4913	0.62	-1.5
4,905,608	-		GFF4913	0.62	+0.5
4,905,608	-		GFF4913	0.62	-2.2
4,905,620	+		GFF4913	0.63	-1.3
4,905,641	+		GFF4913	0.65	-0.4
4,905,683	+		GFF4913	0.70	-0.4
4,905,683	+		GFF4913	0.70	-0.1
4,905,688	+		GFF4913	0.70	-2.0
4,905,691	-		GFF4913	0.70	-0.4
4,905,691	-		GFF4913	0.70	-0.3
4,905,708	-		GFF4913	0.72	+0.5
4,905,711	+		GFF4913	0.72	-1.1
4,905,711	+		GFF4913	0.72	-0.5
4,905,711	+		GFF4913	0.72	-0.0
4,905,719	-		GFF4913	0.73	-0.5
4,905,719	-		GFF4913	0.73	-0.1
4,905,719	-		GFF4913	0.73	-0.2
4,905,719	-		GFF4913	0.73	-0.1
4,905,719	-		GFF4913	0.73	-0.2
4,905,719	-		GFF4913	0.73	-0.6
4,905,720	-		GFF4913	0.73	-0.4
4,905,722	+		GFF4913	0.73	-2.7
4,905,730	-		GFF4913	0.74	-0.5
4,905,740	-		GFF4913	0.75	+0.7
4,905,749	+		GFF4913	0.76	-1.1
4,905,749	+		GFF4913	0.76	-2.1
4,905,749	+		GFF4913	0.76	+0.0
4,905,775	+		GFF4913	0.79	-1.1
4,905,776	+		GFF4913	0.79	-0.4
4,905,819	-		GFF4913	0.83	+0.3
4,905,824	-		GFF4913	0.84	+1.7
4,905,856	-		GFF4913	0.87	-2.5
4,905,867	+		GFF4913	0.88	-1.3
4,905,867	+		GFF4913	0.88	-1.5
4,905,875	-		GFF4913	0.89	-2.5
4,905,880	-		GFF4913	0.89	-0.3
4,905,885	+		GFF4913	0.90	-2.7
4,905,888	-		GFF4913	0.90	-0.1
4,905,890	+				-1.6
4,905,895	+				-2.1
4,905,895	+				-1.8
4,905,898	-				+0.6
4,905,908	-				+1.6
4,905,912	+				-0.8
4,905,912	+				-0.4
4,905,920	-				-1.7
4,905,920	-				-0.6
4,905,920	-				-1.5
4,905,920	-				+1.8
4,905,921	-				-0.8
4,905,942	+				-0.9