Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF488 and GFF489 are separated by 165 nucleotides GFF489 and GFF490 are separated by 123 nucleotides GFF490 and GFF491 are separated by 94 nucleotides GFF491 and GFF492 are separated by 84 nucleotides GFF492 and GFF493 are separated by 25 nucleotides
GFF488 - protein of unknown function DUF1244, at 488,879 to 489,178
GFF488
GFF489 - hypothetical protein, at 489,344 to 489,586
GFF489
GFF490 - UPF0145 protein YbjQ, at 489,710 to 490,036
GFF490
GFF491 - Probable transcriptional regulatory protein YebC, at 490,131 to 490,874
GFF491
GFF492 - Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4), at 490,959 to 491,450
GFF492
GFF493 - hypothetical protein, at 491,476 to 491,706
GFF493
Position (kb) 490
491 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 489.140 kb on + strand, within GFF488 at 489.140 kb on + strand, within GFF488 at 489.147 kb on - strand, within GFF488 at 489.148 kb on - strand, within GFF488 at 489.148 kb on - strand, within GFF488 at 489.148 kb on - strand, within GFF488 at 489.148 kb on - strand, within GFF488 at 489.148 kb on - strand, within GFF488 at 489.148 kb on - strand, within GFF488 at 489.158 kb on - strand at 489.171 kb on + strand at 489.172 kb on + strand at 489.172 kb on + strand at 489.175 kb on - strand at 489.179 kb on + strand at 489.187 kb on - strand at 489.187 kb on - strand at 489.187 kb on - strand at 489.197 kb on - strand at 489.202 kb on - strand at 489.207 kb on - strand at 489.237 kb on + strand at 489.257 kb on + strand at 489.267 kb on + strand at 489.272 kb on + strand at 489.576 kb on + strand at 489.576 kb on + strand at 489.581 kb on + strand at 489.581 kb on + strand at 489.581 kb on + strand at 489.589 kb on - strand at 489.589 kb on - strand at 489.589 kb on - strand at 489.589 kb on - strand at 489.589 kb on - strand at 489.603 kb on + strand at 489.610 kb on - strand at 489.613 kb on + strand at 489.613 kb on + strand at 489.613 kb on + strand at 489.613 kb on + strand at 489.613 kb on + strand at 489.613 kb on + strand at 489.613 kb on + strand at 489.613 kb on + strand at 489.613 kb on + strand at 489.613 kb on + strand at 489.620 kb on + strand at 489.620 kb on + strand at 489.621 kb on + strand at 489.621 kb on - strand at 489.621 kb on - strand at 489.621 kb on - strand at 489.629 kb on - strand at 489.637 kb on + strand at 489.643 kb on - strand at 489.648 kb on + strand at 489.649 kb on + strand at 489.654 kb on + strand at 489.659 kb on + strand at 489.667 kb on - strand at 489.667 kb on - strand at 489.677 kb on - strand at 489.706 kb on + strand at 489.717 kb on + strand at 489.725 kb on - strand at 489.739 kb on - strand at 489.743 kb on + strand, within GFF490 at 489.763 kb on + strand, within GFF490 at 489.763 kb on + strand, within GFF490 at 489.770 kb on - strand, within GFF490 at 489.771 kb on - strand, within GFF490 at 489.771 kb on - strand, within GFF490 at 489.799 kb on - strand, within GFF490 at 489.821 kb on + strand, within GFF490 at 489.821 kb on + strand, within GFF490 at 489.823 kb on + strand, within GFF490 at 489.823 kb on + strand, within GFF490 at 489.823 kb on + strand, within GFF490 at 489.829 kb on - strand, within GFF490 at 489.829 kb on - strand, within GFF490 at 489.831 kb on - strand, within GFF490 at 489.831 kb on - strand, within GFF490 at 489.831 kb on - strand, within GFF490 at 489.853 kb on - strand, within GFF490 at 489.864 kb on + strand, within GFF490 at 489.864 kb on + strand, within GFF490 at 489.867 kb on + strand, within GFF490 at 489.872 kb on - strand, within GFF490 at 489.872 kb on - strand, within GFF490 at 489.872 kb on - strand, within GFF490 at 489.883 kb on - strand, within GFF490 at 489.883 kb on - strand, within GFF490 at 489.931 kb on + strand, within GFF490 at 489.944 kb on + strand, within GFF490 at 489.944 kb on + strand, within GFF490 at 489.944 kb on - strand, within GFF490 at 489.952 kb on - strand, within GFF490 at 489.952 kb on - strand, within GFF490 at 489.959 kb on + strand, within GFF490 at 489.974 kb on - strand, within GFF490 at 489.974 kb on - strand, within GFF490 at 489.976 kb on + strand, within GFF490 at 489.979 kb on - strand, within GFF490 at 489.981 kb on + strand, within GFF490 at 489.998 kb on - strand, within GFF490 at 489.998 kb on - strand, within GFF490 at 490.018 kb on - strand at 490.027 kb on + strand at 490.043 kb on - strand at 490.055 kb on + strand at 490.055 kb on + strand at 490.055 kb on + strand at 490.055 kb on + strand at 490.055 kb on + strand at 490.061 kb on - strand at 490.063 kb on - strand at 490.063 kb on - strand at 490.063 kb on - strand at 490.063 kb on - strand at 490.064 kb on - strand at 490.072 kb on - strand at 490.583 kb on + strand, within GFF491 at 490.842 kb on - strand at 490.842 kb on - strand at 490.842 kb on - strand at 490.842 kb on - strand at 490.868 kb on + strand at 490.868 kb on + strand at 490.868 kb on + strand at 490.913 kb on + strand at 490.929 kb on + strand at 490.929 kb on + strand at 490.936 kb on - strand at 490.936 kb on - strand at 490.948 kb on + strand at 490.948 kb on + strand at 490.948 kb on + strand at 490.948 kb on + strand at 490.960 kb on + strand at 491.054 kb on + strand, within GFF492 at 491.054 kb on + strand, within GFF492 at 491.062 kb on - strand, within GFF492 at 491.062 kb on - strand, within GFF492 at 491.062 kb on - strand, within GFF492 at 491.109 kb on + strand, within GFF492 at 491.112 kb on - strand, within GFF492 at 491.112 kb on - strand, within GFF492 at 491.205 kb on - strand, within GFF492 at 491.223 kb on - strand, within GFF492 at 491.233 kb on - strand, within GFF492 at 491.243 kb on - strand, within GFF492 at 491.316 kb on + strand, within GFF492 at 491.317 kb on + strand, within GFF492 at 491.321 kb on + strand, within GFF492 at 491.333 kb on + strand, within GFF492 at 491.410 kb on + strand at 491.425 kb on + strand at 491.433 kb on - strand at 491.440 kb on - strand at 491.449 kb on + strand at 491.458 kb on + strand at 491.477 kb on + strand at 491.487 kb on + strand at 491.487 kb on + strand at 491.488 kb on + strand at 491.491 kb on - strand at 491.520 kb on - strand, within GFF493 at 491.522 kb on - strand, within GFF493 at 491.532 kb on + strand, within GFF493 at 491.533 kb on - strand, within GFF493 at 491.535 kb on - strand, within GFF493 at 491.539 kb on - strand, within GFF493 at 491.552 kb on + strand, within GFF493 at 491.552 kb on + strand, within GFF493 at 491.560 kb on - strand, within GFF493 at 491.560 kb on - strand, within GFF493 at 491.560 kb on - strand, within GFF493 at 491.570 kb on - strand, within GFF493 at 491.581 kb on + strand, within GFF493 at 491.630 kb on + strand, within GFF493 at 491.633 kb on - strand, within GFF493 at 491.633 kb on - strand, within GFF493 at 491.670 kb on - strand, within GFF493 at 491.672 kb on - strand, within GFF493 at 491.674 kb on + strand, within GFF493 at 491.674 kb on + strand, within GFF493 at 491.674 kb on + strand, within GFF493 at 491.682 kb on - strand, within GFF493 at 491.726 kb on + strand at 491.728 kb on + strand at 491.736 kb on - strand at 491.758 kb on + strand at 491.758 kb on + strand at 491.766 kb on - strand at 491.766 kb on - strand at 491.781 kb on - strand at 491.843 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 489,140 + GFF488 0.87 -0.3 489,140 + GFF488 0.87 +0.9 489,147 - GFF488 0.89 -0.2 489,148 - GFF488 0.90 -2.9 489,148 - GFF488 0.90 +0.2 489,148 - GFF488 0.90 -2.1 489,148 - GFF488 0.90 -1.5 489,148 - GFF488 0.90 +0.5 489,148 - GFF488 0.90 -1.0 489,158 - +0.1 489,171 + -0.5 489,172 + +1.4 489,172 + -2.0 489,175 - -0.8 489,179 + -0.5 489,187 - +0.2 489,187 - +1.0 489,187 - +0.1 489,197 - -0.9 489,202 - -0.5 489,207 - +0.6 489,237 + +0.7 489,257 + +0.0 489,267 + -0.4 489,272 + -2.0 489,576 + +0.5 489,576 + +1.4 489,581 + -0.5 489,581 + -0.2 489,581 + -0.3 489,589 - -0.8 489,589 - -0.3 489,589 - +0.5 489,589 - -1.2 489,589 - +0.3 489,603 + +1.1 489,610 - +0.6 489,613 + +0.3 489,613 + -0.1 489,613 + -0.1 489,613 + -1.3 489,613 + -1.0 489,613 + +0.2 489,613 + +1.4 489,613 + +1.4 489,613 + +0.2 489,613 + +0.2 489,620 + -1.5 489,620 + -1.0 489,621 + -0.7 489,621 - -0.5 489,621 - +1.1 489,621 - +1.0 489,629 - -0.5 489,637 + +0.0 489,643 - -1.1 489,648 + +0.7 489,649 + -0.2 489,654 + -0.5 489,659 + +0.2 489,667 - +0.4 489,667 - -0.3 489,677 - -2.1 489,706 + -0.5 489,717 + +0.5 489,725 - -0.6 489,739 - -1.1 489,743 + GFF490 0.10 +0.4 489,763 + GFF490 0.16 -1.5 489,763 + GFF490 0.16 -1.7 489,770 - GFF490 0.18 +0.4 489,771 - GFF490 0.19 +0.4 489,771 - GFF490 0.19 -0.5 489,799 - GFF490 0.27 -0.2 489,821 + GFF490 0.34 +0.9 489,821 + GFF490 0.34 -0.2 489,823 + GFF490 0.35 -1.5 489,823 + GFF490 0.35 -0.3 489,823 + GFF490 0.35 +0.7 489,829 - GFF490 0.36 +0.4 489,829 - GFF490 0.36 -0.6 489,831 - GFF490 0.37 -0.2 489,831 - GFF490 0.37 -1.0 489,831 - GFF490 0.37 +0.1 489,853 - GFF490 0.44 -1.7 489,864 + GFF490 0.47 -0.6 489,864 + GFF490 0.47 -0.7 489,867 + GFF490 0.48 -2.2 489,872 - GFF490 0.50 +0.9 489,872 - GFF490 0.50 -0.1 489,872 - GFF490 0.50 -0.5 489,883 - GFF490 0.53 -0.6 489,883 - GFF490 0.53 -0.5 489,931 + GFF490 0.68 -1.0 489,944 + GFF490 0.72 +0.6 489,944 + GFF490 0.72 -1.0 489,944 - GFF490 0.72 -0.7 489,952 - GFF490 0.74 -2.2 489,952 - GFF490 0.74 -0.8 489,959 + GFF490 0.76 -1.0 489,974 - GFF490 0.81 +0.3 489,974 - GFF490 0.81 -0.3 489,976 + GFF490 0.81 -1.0 489,979 - GFF490 0.82 -1.4 489,981 + GFF490 0.83 -1.2 489,998 - GFF490 0.88 +1.3 489,998 - GFF490 0.88 -1.2 490,018 - -1.1 490,027 + -0.5 490,043 - -1.5 490,055 + -1.2 490,055 + -0.2 490,055 + +0.2 490,055 + +0.9 490,055 + +0.3 490,061 - -0.2 490,063 - -0.4 490,063 - +0.4 490,063 - -0.2 490,063 - +0.5 490,064 - -0.9 490,072 - -0.8 490,583 + GFF491 0.61 -1.8 490,842 - -1.1 490,842 - +0.3 490,842 - +0.6 490,842 - -1.2 490,868 + -1.2 490,868 + +0.4 490,868 + -0.9 490,913 + +0.3 490,929 + +0.1 490,929 + +0.1 490,936 - -0.2 490,936 - -0.5 490,948 + +0.4 490,948 + -1.1 490,948 + +0.8 490,948 + -0.4 490,960 + -0.6 491,054 + GFF492 0.19 -0.2 491,054 + GFF492 0.19 -0.5 491,062 - GFF492 0.21 -1.3 491,062 - GFF492 0.21 -1.3 491,062 - GFF492 0.21 -1.3 491,109 + GFF492 0.30 +0.4 491,112 - GFF492 0.31 -0.5 491,112 - GFF492 0.31 -0.7 491,205 - GFF492 0.50 +0.2 491,223 - GFF492 0.54 -1.9 491,233 - GFF492 0.56 +1.1 491,243 - GFF492 0.58 -1.1 491,316 + GFF492 0.73 -1.4 491,317 + GFF492 0.73 -0.8 491,321 + GFF492 0.74 +0.0 491,333 + GFF492 0.76 -1.4 491,410 + +0.5 491,425 + +0.0 491,433 - -0.6 491,440 - -2.0 491,449 + +0.1 491,458 + -0.9 491,477 + +0.1 491,487 + +0.4 491,487 + -1.3 491,488 + -0.2 491,491 - +1.0 491,520 - GFF493 0.19 +0.7 491,522 - GFF493 0.20 -1.1 491,532 + GFF493 0.24 -1.6 491,533 - GFF493 0.25 -1.4 491,535 - GFF493 0.26 -0.2 491,539 - GFF493 0.27 -0.3 491,552 + GFF493 0.33 +0.4 491,552 + GFF493 0.33 -0.6 491,560 - GFF493 0.36 -0.7 491,560 - GFF493 0.36 -0.1 491,560 - GFF493 0.36 -0.2 491,570 - GFF493 0.41 +0.5 491,581 + GFF493 0.45 +0.2 491,630 + GFF493 0.67 -1.6 491,633 - GFF493 0.68 +1.0 491,633 - GFF493 0.68 -0.4 491,670 - GFF493 0.84 -1.3 491,672 - GFF493 0.85 -0.6 491,674 + GFF493 0.86 +0.8 491,674 + GFF493 0.86 +0.8 491,674 + GFF493 0.86 +0.7 491,682 - GFF493 0.89 -0.3 491,726 + +0.2 491,728 + -0.8 491,736 - +0.7 491,758 + +1.0 491,758 + +0.0 491,766 - +0.8 491,766 - -0.6 491,781 - +0.6 491,843 - -1.3
Or see this region's nucleotide sequence