Strain Fitness in Sphingobium sp. HT1-2 around GFF491

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF488 and GFF489 are separated by 165 nucleotidesGFF489 and GFF490 are separated by 123 nucleotidesGFF490 and GFF491 are separated by 94 nucleotidesGFF491 and GFF492 are separated by 84 nucleotidesGFF492 and GFF493 are separated by 25 nucleotides GFF488 - protein of unknown function DUF1244, at 488,879 to 489,178 GFF488 GFF489 - hypothetical protein, at 489,344 to 489,586 GFF489 GFF490 - UPF0145 protein YbjQ, at 489,710 to 490,036 GFF490 GFF491 - Probable transcriptional regulatory protein YebC, at 490,131 to 490,874 GFF491 GFF492 - Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4), at 490,959 to 491,450 GFF492 GFF493 - hypothetical protein, at 491,476 to 491,706 GFF493 Position (kb) 490 491Strain fitness (log2 ratio) -2 -1 0 1 2at 489.147 kb on - strand, within GFF488at 489.148 kb on - strand, within GFF488at 489.148 kb on - strand, within GFF488at 489.148 kb on - strand, within GFF488at 489.148 kb on - strand, within GFF488at 489.148 kb on - strand, within GFF488at 489.148 kb on - strand, within GFF488at 489.158 kb on - strandat 489.171 kb on + strandat 489.172 kb on + strandat 489.175 kb on - strandat 489.179 kb on + strandat 489.187 kb on - strandat 489.187 kb on - strandat 489.267 kb on + strandat 489.272 kb on + strandat 489.576 kb on + strandat 489.581 kb on + strandat 489.581 kb on + strandat 489.589 kb on - strandat 489.610 kb on - strandat 489.613 kb on + strandat 489.613 kb on + strandat 489.613 kb on + strandat 489.620 kb on + strandat 489.621 kb on - strandat 489.629 kb on - strandat 489.637 kb on + strandat 489.667 kb on - strandat 489.667 kb on - strandat 489.667 kb on - strandat 489.677 kb on - strandat 489.706 kb on + strandat 489.717 kb on + strandat 489.727 kb on - strandat 489.763 kb on + strand, within GFF490at 489.763 kb on + strand, within GFF490at 489.771 kb on - strand, within GFF490at 489.771 kb on - strand, within GFF490at 489.799 kb on - strand, within GFF490at 489.821 kb on + strand, within GFF490at 489.823 kb on + strand, within GFF490at 489.823 kb on + strand, within GFF490at 489.823 kb on + strand, within GFF490at 489.829 kb on - strand, within GFF490at 489.829 kb on - strand, within GFF490at 489.831 kb on - strand, within GFF490at 489.831 kb on - strand, within GFF490at 489.831 kb on - strand, within GFF490at 489.853 kb on - strand, within GFF490at 489.864 kb on + strand, within GFF490at 489.883 kb on - strand, within GFF490at 489.883 kb on - strand, within GFF490at 489.931 kb on + strand, within GFF490at 489.952 kb on - strand, within GFF490at 489.959 kb on + strand, within GFF490at 489.974 kb on - strand, within GFF490at 489.979 kb on - strand, within GFF490at 489.981 kb on + strand, within GFF490at 489.998 kb on - strand, within GFF490at 490.018 kb on - strandat 490.027 kb on + strandat 490.043 kb on - strandat 490.055 kb on + strandat 490.055 kb on + strandat 490.061 kb on - strandat 490.063 kb on - strandat 490.072 kb on - strandat 490.166 kb on + strandat 490.583 kb on + strand, within GFF491at 490.842 kb on - strandat 490.842 kb on - strandat 490.868 kb on + strandat 490.868 kb on + strandat 490.929 kb on + strandat 490.929 kb on + strandat 490.936 kb on - strandat 490.936 kb on - strandat 490.948 kb on + strandat 490.948 kb on + strandat 491.007 kb on - strandat 491.054 kb on + strand, within GFF492at 491.054 kb on + strand, within GFF492at 491.104 kb on + strand, within GFF492at 491.112 kb on - strand, within GFF492at 491.163 kb on + strand, within GFF492at 491.215 kb on + strand, within GFF492at 491.215 kb on - strand, within GFF492at 491.233 kb on - strand, within GFF492at 491.333 kb on + strand, within GFF492at 491.404 kb on + strandat 491.410 kb on + strandat 491.428 kb on - strandat 491.433 kb on - strandat 491.440 kb on - strandat 491.449 kb on + strandat 491.452 kb on - strandat 491.458 kb on + strandat 491.477 kb on + strandat 491.488 kb on + strandat 491.491 kb on - strandat 491.520 kb on - strand, within GFF493at 491.533 kb on - strand, within GFF493at 491.535 kb on - strand, within GFF493at 491.549 kb on - strand, within GFF493at 491.552 kb on + strand, within GFF493at 491.560 kb on - strand, within GFF493at 491.560 kb on - strand, within GFF493at 491.560 kb on - strand, within GFF493at 491.560 kb on - strand, within GFF493at 491.570 kb on - strand, within GFF493at 491.581 kb on + strand, within GFF493at 491.636 kb on + strand, within GFF493at 491.670 kb on - strand, within GFF493at 491.672 kb on - strand, within GFF493at 491.766 kb on - strandat 491.860 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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489,147 - GFF488 0.89 -0.1
489,148 - GFF488 0.90 -2.7
489,148 - GFF488 0.90 +0.5
489,148 - GFF488 0.90 +0.4
489,148 - GFF488 0.90 -1.3
489,148 - GFF488 0.90 +0.7
489,148 - GFF488 0.90 -0.8
489,158 - +0.3
489,171 + -0.3
489,172 + +1.5
489,175 - -0.6
489,179 + -0.3
489,187 - +0.4
489,187 - +0.3
489,267 + -0.2
489,272 + -1.9
489,576 + +0.7
489,581 + -0.0
489,581 + -0.1
489,589 - -1.0
489,610 - +0.8
489,613 + +0.1
489,613 + +0.3
489,613 + +0.3
489,620 + -0.8
489,621 - +1.3
489,629 - -0.3
489,637 + +0.2
489,667 - +0.5
489,667 - +1.2
489,667 - -0.1
489,677 - -1.9
489,706 + -0.4
489,717 + +0.7
489,727 - -0.8
489,763 + GFF490 0.16 -0.8
489,763 + GFF490 0.16 -1.5
489,771 - GFF490 0.19 +0.6
489,771 - GFF490 0.19 -0.4
489,799 - GFF490 0.27 -0.0
489,821 + GFF490 0.34 +1.0
489,823 + GFF490 0.35 +0.2
489,823 + GFF490 0.35 -1.3
489,823 + GFF490 0.35 +0.9
489,829 - GFF490 0.36 +0.6
489,829 - GFF490 0.36 -0.4
489,831 - GFF490 0.37 +0.0
489,831 - GFF490 0.37 -0.9
489,831 - GFF490 0.37 +0.2
489,853 - GFF490 0.44 -1.5
489,864 + GFF490 0.47 -0.4
489,883 - GFF490 0.53 -0.5
489,883 - GFF490 0.53 -0.4
489,931 + GFF490 0.68 -0.8
489,952 - GFF490 0.74 -2.0
489,959 + GFF490 0.76 -0.8
489,974 - GFF490 0.81 -0.1
489,979 - GFF490 0.82 -1.2
489,981 + GFF490 0.83 -1.0
489,998 - GFF490 0.88 -1.0
490,018 - -0.9
490,027 + -0.3
490,043 - -1.3
490,055 + -0.0
490,055 + +0.4
490,061 - -0.1
490,063 - +1.5
490,072 - -0.6
490,166 + +2.1
490,583 + GFF491 0.61 -1.6
490,842 - +0.5
490,842 - -1.0
490,868 + -1.0
490,868 + -0.7
490,929 + +0.3
490,929 + +0.2
490,936 - +0.0
490,936 - -0.3
490,948 + +1.0
490,948 + -0.2
491,007 - +1.2
491,054 + GFF492 0.19 -0.5
491,054 + GFF492 0.19 -0.4
491,104 + GFF492 0.29 +0.3
491,112 - GFF492 0.31 +0.1
491,163 + GFF492 0.41 -0.5
491,215 + GFF492 0.52 +0.5
491,215 - GFF492 0.52 +0.5
491,233 - GFF492 0.56 +1.3
491,333 + GFF492 0.76 -1.3
491,404 + +0.5
491,410 + +0.7
491,428 - +0.5
491,433 - -0.5
491,440 - -1.8
491,449 + +0.3
491,452 - +1.8
491,458 + -0.7
491,477 + +0.3
491,488 + -0.0
491,491 - +1.2
491,520 - GFF493 0.19 +0.8
491,533 - GFF493 0.25 -1.2
491,535 - GFF493 0.26 -0.1
491,549 - GFF493 0.32 -0.8
491,552 + GFF493 0.33 -0.4
491,560 - GFF493 0.36 -0.5
491,560 - GFF493 0.36 +0.1
491,560 - GFF493 0.36 +0.8
491,560 - GFF493 0.36 -0.0
491,570 - GFF493 0.41 +0.7
491,581 + GFF493 0.45 +0.4
491,636 + GFF493 0.69 -0.5
491,670 - GFF493 0.84 -1.2
491,672 - GFF493 0.85 -0.4
491,766 - -0.5
491,860 - +0.4

Or see this region's nucleotide sequence