Strain Fitness in Sphingobium sp. HT1-2 around GFF49

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF48 and GFF49 are separated by 69 nucleotidesGFF49 and GFF50 are separated by 66 nucleotides GFF48 - GTP-binding and nucleic acid-binding protein YchF, at 38,177 to 39,277 GFF48 GFF49 - hypothetical protein, at 39,347 to 40,057 GFF49 GFF50 - Phosphoglucomutase (EC 5.4.2.2), at 40,124 to 41,752 GFF50 Position (kb) 39 40 41Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 38.478 kb on + strand, within GFF48at 38.632 kb on - strand, within GFF48at 38.922 kb on - strand, within GFF48at 38.927 kb on - strand, within GFF48at 39.014 kb on + strand, within GFF48at 39.027 kb on - strand, within GFF48at 39.029 kb on - strand, within GFF48at 39.068 kb on + strand, within GFF48at 39.216 kb on + strandat 39.226 kb on + strandat 39.334 kb on + strandat 39.362 kb on - strandat 39.399 kb on + strandat 39.407 kb on - strandat 39.444 kb on - strand, within GFF49at 39.536 kb on + strand, within GFF49at 39.549 kb on + strand, within GFF49at 39.582 kb on + strand, within GFF49at 39.590 kb on - strand, within GFF49at 39.608 kb on - strand, within GFF49at 39.629 kb on - strand, within GFF49at 39.653 kb on + strand, within GFF49at 39.661 kb on - strand, within GFF49at 39.691 kb on + strand, within GFF49at 39.699 kb on - strand, within GFF49at 39.721 kb on + strand, within GFF49at 39.721 kb on + strand, within GFF49at 39.729 kb on - strand, within GFF49at 39.731 kb on + strand, within GFF49at 39.780 kb on + strand, within GFF49at 39.780 kb on + strand, within GFF49at 39.780 kb on + strand, within GFF49at 39.780 kb on + strand, within GFF49at 39.787 kb on - strand, within GFF49at 39.788 kb on - strand, within GFF49at 39.788 kb on - strand, within GFF49at 39.788 kb on - strand, within GFF49at 39.794 kb on - strand, within GFF49at 39.804 kb on - strand, within GFF49at 39.831 kb on + strand, within GFF49at 39.836 kb on + strand, within GFF49at 39.836 kb on + strand, within GFF49at 39.839 kb on - strand, within GFF49at 39.842 kb on + strand, within GFF49at 39.844 kb on - strand, within GFF49at 39.844 kb on - strand, within GFF49at 39.844 kb on - strand, within GFF49at 39.844 kb on - strand, within GFF49at 39.845 kb on - strand, within GFF49at 39.856 kb on - strand, within GFF49at 39.894 kb on + strand, within GFF49at 39.914 kb on + strand, within GFF49at 39.939 kb on + strand, within GFF49at 39.947 kb on - strand, within GFF49at 39.978 kb on + strand, within GFF49at 39.998 kb on + strandat 39.998 kb on + strandat 40.006 kb on - strandat 40.006 kb on - strandat 40.006 kb on - strandat 40.065 kb on + strandat 40.073 kb on - strandat 40.091 kb on - strandat 40.102 kb on + strandat 40.130 kb on - strandat 40.135 kb on - strandat 40.135 kb on - strandat 40.139 kb on + strandat 40.142 kb on - strandat 40.147 kb on - strandat 40.147 kb on - strandat 40.147 kb on - strandat 40.147 kb on - strandat 40.147 kb on - strandat 40.147 kb on - strandat 40.152 kb on - strandat 40.268 kb on - strandat 40.386 kb on - strand, within GFF50at 40.386 kb on - strand, within GFF50at 40.489 kb on - strand, within GFF50at 40.661 kb on - strand, within GFF50

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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38,478 + GFF48 0.27 -0.1
38,632 - GFF48 0.41 +0.5
38,922 - GFF48 0.68 +0.2
38,927 - GFF48 0.68 -0.5
39,014 + GFF48 0.76 -0.5
39,027 - GFF48 0.77 +1.5
39,029 - GFF48 0.77 -0.5
39,068 + GFF48 0.81 +0.5
39,216 + -1.0
39,226 + +1.5
39,334 + +0.4
39,362 - +0.2
39,399 + +0.4
39,407 - -0.6
39,444 - GFF49 0.14 -1.1
39,536 + GFF49 0.27 +0.7
39,549 + GFF49 0.28 +0.4
39,582 + GFF49 0.33 -0.2
39,590 - GFF49 0.34 +0.6
39,608 - GFF49 0.37 +1.4
39,629 - GFF49 0.40 -1.5
39,653 + GFF49 0.43 -0.3
39,661 - GFF49 0.44 +0.5
39,691 + GFF49 0.48 -0.6
39,699 - GFF49 0.50 +0.2
39,721 + GFF49 0.53 -2.0
39,721 + GFF49 0.53 -0.4
39,729 - GFF49 0.54 -0.1
39,731 + GFF49 0.54 +0.5
39,780 + GFF49 0.61 -2.2
39,780 + GFF49 0.61 -0.7
39,780 + GFF49 0.61 -0.7
39,780 + GFF49 0.61 -0.1
39,787 - GFF49 0.62 +0.8
39,788 - GFF49 0.62 +2.5
39,788 - GFF49 0.62 -2.9
39,788 - GFF49 0.62 -0.6
39,794 - GFF49 0.63 +0.9
39,804 - GFF49 0.64 +0.3
39,831 + GFF49 0.68 +1.1
39,836 + GFF49 0.69 +0.2
39,836 + GFF49 0.69 +2.0
39,839 - GFF49 0.69 +1.2
39,842 + GFF49 0.70 +1.1
39,844 - GFF49 0.70 -0.5
39,844 - GFF49 0.70 -0.3
39,844 - GFF49 0.70 -0.7
39,844 - GFF49 0.70 -0.1
39,845 - GFF49 0.70 +0.7
39,856 - GFF49 0.72 -0.7
39,894 + GFF49 0.77 +0.4
39,914 + GFF49 0.80 +0.2
39,939 + GFF49 0.83 -2.1
39,947 - GFF49 0.84 +1.3
39,978 + GFF49 0.89 +1.0
39,998 + -1.6
39,998 + +0.2
40,006 - -1.3
40,006 - +1.2
40,006 - -0.0
40,065 + -0.7
40,073 - +0.6
40,091 - +0.3
40,102 + -1.0
40,130 - +2.1
40,135 - -0.6
40,135 - -0.7
40,139 + -1.4
40,142 - -0.4
40,147 - +1.4
40,147 - -0.7
40,147 - -0.3
40,147 - -1.5
40,147 - +0.1
40,147 - -0.6
40,152 - -1.6
40,268 - +0.5
40,386 - GFF50 0.16 -1.1
40,386 - GFF50 0.16 -0.1
40,489 - GFF50 0.22 +0.2
40,661 - GFF50 0.33 -0.7

Or see this region's nucleotide sequence