Strain Fitness in Sphingobium sp. HT1-2 around GFF4822

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,807,600	+		GFF4820	0.80	-0.8
4,807,621	+		GFF4820	0.82	-0.6
4,807,654	-		GFF4820	0.85	+0.3
4,807,685	+		GFF4820	0.88	+0.3
4,807,717	+				-0.4
4,807,717	-				-1.3
4,807,723	+				-0.6
4,807,745	-				-1.0
4,807,745	-				+1.2
4,807,755	-				+0.8
4,807,772	-				-0.0
4,807,787	-				-1.8
4,807,789	+				+0.1
4,807,814	-				-2.1
4,807,815	+				+0.4
4,807,823	-				-0.8
4,807,825	+				+1.0
4,807,825	-				-1.6
4,807,825	-				-2.0
4,807,827	+				-0.2
4,807,827	+				+2.1
4,807,833	-				-2.6
4,807,835	-				-1.8
4,807,838	+				+0.7
4,807,845	-				-0.6
4,807,850	+				+0.7
4,807,858	-				-1.2
4,808,240	+				-0.5
4,808,298	-				-2.3
4,808,318	+				+0.1
4,808,335	+				-1.4
4,808,335	+				-0.4
4,808,335	+				-0.0
4,808,335	+				+1.1
4,808,335	+				+0.0
4,808,335	+				+0.7
4,808,335	+				-1.5
4,808,335	+				-0.1
4,808,335	+				+1.3
4,808,343	-				-1.0
4,808,343	-				-0.1
4,808,398	-				-2.1
4,808,398	-				-3.4
4,808,400	-				-1.6
4,808,418	+				+0.8
4,808,419	+				-0.9
4,808,425	+				+0.9
4,808,425	+				+1.3
4,808,426	-				+0.4
4,808,443	-				-1.6
4,808,462	-				-1.5
4,808,464	+				+0.1
4,808,464	+				-0.3
4,808,469	+				-1.5
4,808,472	-				-1.1
4,808,482	-				-0.1
4,808,487	+				+0.7
4,808,505	+				-1.7
4,808,514	-				+0.1
4,808,562	-				-0.0
4,808,567	-				-0.4
4,808,621	+				-1.2
4,808,629	-				-0.4
4,808,638	+				+0.4
4,808,648	+				+0.8
4,808,648	-				-0.1
4,808,656	+				-1.7
4,808,656	+				+0.3
4,808,664	-				+0.5
4,808,664	-				-0.1
4,808,666	-				-0.6
4,808,693	+		GFF4822	0.12	+0.5
4,808,701	-		GFF4822	0.13	-2.6
4,808,701	-		GFF4822	0.13	-0.3
4,808,701	-		GFF4822	0.13	+0.2
4,808,759	-		GFF4822	0.20	-1.5
4,808,759	-		GFF4822	0.20	+0.1
4,808,759	-		GFF4822	0.20	-0.2
4,808,793	+		GFF4822	0.24	+0.4
4,808,808	+		GFF4822	0.25	+0.4
4,808,816	-		GFF4822	0.26	+0.7
4,808,836	-		GFF4822	0.29	+0.2
4,808,836	-		GFF4822	0.29	+0.3
4,808,896	-		GFF4822	0.36	-0.1
4,808,897	+		GFF4822	0.36	-1.5
4,808,897	+		GFF4822	0.36	-1.5
4,808,905	+		GFF4822	0.37	+0.0
4,808,905	-		GFF4822	0.37	-0.7
4,808,905	-		GFF4822	0.37	-0.2
4,808,905	-		GFF4822	0.37	+0.5
4,808,905	-		GFF4822	0.37	-1.1
4,808,912	-		GFF4822	0.38	-0.6
4,808,915	+		GFF4822	0.38	+0.3
4,808,917	+		GFF4822	0.38	+0.3
4,808,917	-		GFF4822	0.38	-1.4
4,808,920	-		GFF4822	0.38	-2.2
4,808,928	+		GFF4822	0.39	-1.6
4,808,933	+		GFF4822	0.40	-0.2
4,808,933	+		GFF4822	0.40	-0.0
4,808,936	-		GFF4822	0.40	+0.9
4,808,936	-		GFF4822	0.40	-0.9
4,808,936	-		GFF4822	0.40	-1.6
4,808,940	+		GFF4822	0.41	+1.1
4,808,941	-		GFF4822	0.41	+0.3
4,808,946	-		GFF4822	0.41	+0.8
4,808,946	-		GFF4822	0.41	-0.3
4,808,958	+		GFF4822	0.43	-1.5
4,808,965	+		GFF4822	0.44	-0.0
4,808,966	-		GFF4822	0.44	-0.7
4,808,974	+		GFF4822	0.45	-1.7
4,808,995	-		GFF4822	0.47	-1.0
4,808,999	+		GFF4822	0.48	-0.5
4,808,999	+		GFF4822	0.48	+0.5
4,808,999	+		GFF4822	0.48	-0.9
4,808,999	+		GFF4822	0.48	-0.2
4,808,999	+		GFF4822	0.48	+0.1
4,809,007	-		GFF4822	0.49	+0.1
4,809,007	-		GFF4822	0.49	-0.2
4,809,007	-		GFF4822	0.49	-0.3
4,809,007	-		GFF4822	0.49	-0.1
4,809,007	-		GFF4822	0.49	-0.7
4,809,012	-		GFF4822	0.49	-0.0
4,809,012	-		GFF4822	0.49	+1.7
4,809,012	-		GFF4822	0.49	+0.2
4,809,012	-		GFF4822	0.49	-0.7
4,809,012	-		GFF4822	0.49	+0.9
4,809,013	+		GFF4822	0.49	-0.1
4,809,021	-		GFF4822	0.50	+0.1
4,809,023	+		GFF4822	0.50	+0.2
4,809,023	+		GFF4822	0.50	-1.9
4,809,023	+		GFF4822	0.50	-1.0
4,809,031	-		GFF4822	0.51	+0.5
4,809,031	-		GFF4822	0.51	+1.7
4,809,031	-		GFF4822	0.51	+1.4
4,809,031	-		GFF4822	0.51	-0.1
4,809,037	-		GFF4822	0.52	-0.5
4,809,053	+		GFF4822	0.54	+0.3
4,809,060	-		GFF4822	0.55	-0.6
4,809,138	+		GFF4822	0.64	-1.5
4,809,162	-		GFF4822	0.67	-0.9
4,809,170	+		GFF4822	0.67	+0.4
4,809,170	+		GFF4822	0.67	-0.3
4,809,173	-		GFF4822	0.68	-1.5
4,809,191	+		GFF4822	0.70	-0.4
4,809,191	+		GFF4822	0.70	-1.7
4,809,191	+		GFF4822	0.70	+0.5
4,809,191	+		GFF4822	0.70	+0.2
4,809,196	+		GFF4822	0.70	-0.7
4,809,199	-		GFF4822	0.71	+0.1
4,809,199	-		GFF4822	0.71	+1.1
4,809,199	-		GFF4822	0.71	-2.6
4,809,209	-		GFF4822	0.72	-0.6
4,809,241	-		GFF4822	0.76	+0.9
4,809,241	-		GFF4822	0.76	-0.5
4,809,246	-		GFF4822	0.76	+0.1
4,809,251	+		GFF4822	0.77	-0.4
4,809,251	+		GFF4822	0.77	-3.0
4,809,255	-		GFF4822	0.77	+0.2
4,809,259	-		GFF4822	0.78	+0.4
4,809,259	-		GFF4822	0.78	-2.3
4,809,259	-		GFF4822	0.78	-1.7
4,809,259	-		GFF4822	0.78	-0.3
4,809,259	-		GFF4822	0.78	-1.5
4,809,261	+		GFF4822	0.78	-1.7
4,809,292	+		GFF4822	0.82	+0.2
4,809,293	+		GFF4822	0.82	-1.5
4,809,293	+		GFF4822	0.82	+1.0
4,809,293	+		GFF4822	0.82	-1.8
4,809,293	+		GFF4822	0.82	-1.9
4,809,299	+		GFF4822	0.82	+0.4
4,809,299	+		GFF4822	0.82	+0.1
4,809,300	-		GFF4822	0.83	-1.6
4,809,301	-		GFF4822	0.83	+1.2
4,809,301	-		GFF4822	0.83	-0.1
4,809,301	-		GFF4822	0.83	+0.9
4,809,301	-		GFF4822	0.83	+1.0
4,809,301	-		GFF4822	0.83	+0.1
4,809,301	-		GFF4822	0.83	+0.4
4,809,301	-		GFF4822	0.83	-0.7
4,809,313	-		GFF4822	0.84	-0.8
4,809,313	-		GFF4822	0.84	-0.6
4,809,444	-				+0.4
4,809,545	-				+0.4
4,809,546	+				-1.5
4,809,564	+				-3.3
4,809,564	+				+0.4
4,809,565	+				+1.0
4,809,574	-				-1.6
4,809,579	-				-0.1
4,809,580	-				-0.6
4,809,582	+				+0.9
4,809,582	+				-0.8
4,809,582	+				-0.2
4,809,582	+				-0.7
4,809,582	+				-0.4
4,809,590	-				-0.8
4,809,590	-				+0.4
4,809,590	-				+0.1
4,809,590	-				+0.4
4,809,592	+				-1.2
4,809,599	-				-0.5
4,809,599	-				-1.4
4,809,621	+				-0.5
4,809,635	-		GFF4823	0.13	-0.5
4,809,642	+		GFF4823	0.15	+0.2
4,809,642	+		GFF4823	0.15	+0.3
4,809,644	+		GFF4823	0.15	+0.1
4,809,651	-		GFF4823	0.17	+0.4
4,809,651	-		GFF4823	0.17	-1.2
4,809,651	-		GFF4823	0.17	+0.2
4,809,668	+		GFF4823	0.23	-0.1
4,809,674	-		GFF4823	0.24	-0.1
4,809,676	-		GFF4823	0.25	-0.5
4,809,677	-		GFF4823	0.25	-0.2
4,809,677	-		GFF4823	0.25	-1.8
4,809,680	+		GFF4823	0.26	-1.3
4,809,685	+		GFF4823	0.28	-0.2
4,809,691	+		GFF4823	0.30	-0.9
4,809,693	-		GFF4823	0.30	+0.6
4,809,703	-		GFF4823	0.33	+0.2
4,809,733	+		GFF4823	0.43	-0.3
4,809,735	+		GFF4823	0.43	-1.3
4,809,735	+		GFF4823	0.43	+0.3
4,809,735	+		GFF4823	0.43	+0.7
4,809,735	+		GFF4823	0.43	+0.6
4,809,735	+		GFF4823	0.43	-0.2
4,809,735	+		GFF4823	0.43	-1.6
4,809,737	+		GFF4823	0.44	+0.7
4,809,737	+		GFF4823	0.44	-2.4
4,809,737	+		GFF4823	0.44	+0.2
4,809,741	-		GFF4823	0.45	+0.5
4,809,743	-		GFF4823	0.46	-2.2
4,809,743	-		GFF4823	0.46	+0.9
4,809,743	-		GFF4823	0.46	-0.1
4,809,743	-		GFF4823	0.46	+0.1
4,809,743	-		GFF4823	0.46	-2.5
4,809,743	-		GFF4823	0.46	+0.1
4,809,743	-		GFF4823	0.46	-1.4
4,809,746	+		GFF4823	0.46	+0.8
4,809,755	+		GFF4823	0.49	+0.8
4,809,755	+		GFF4823	0.49	+0.6
4,809,757	-		GFF4823	0.50	+0.1
4,809,763	-		GFF4823	0.52	+0.5
4,809,786	+		GFF4823	0.59	-1.2
4,809,809	+		GFF4823	0.66	-0.5
4,809,809	+		GFF4823	0.66	-0.1
4,809,809	+		GFF4823	0.66	+0.3
4,809,809	+		GFF4823	0.66	+0.5
4,809,809	+		GFF4823	0.66	-0.9
4,809,814	+		GFF4823	0.67	+1.1
4,809,814	+		GFF4823	0.67	-0.2
4,809,817	-		GFF4823	0.68	-2.1
4,809,817	-		GFF4823	0.68	-0.7
4,809,817	-		GFF4823	0.68	+0.8
4,809,817	-		GFF4823	0.68	-0.3
4,809,817	-		GFF4823	0.68	+0.3
4,809,817	-		GFF4823	0.68	-1.8
4,809,817	-		GFF4823	0.68	+1.5
4,809,822	-		GFF4823	0.70	-0.3
4,809,853	+		GFF4823	0.79	+0.7
4,809,853	+		GFF4823	0.79	+0.2
4,809,853	+		GFF4823	0.79	+1.4
4,809,856	-		GFF4823	0.80	+0.8
4,809,861	-		GFF4823	0.82	-0.3
4,809,863	+		GFF4823	0.82	+0.1
4,809,883	-		GFF4823	0.88	+0.6
4,809,888	-				+0.1
4,809,890	+				-0.4
4,809,890	+				+1.0
4,809,890	+				-0.2
4,809,894	+				-0.0
4,809,894	+				+0.1
4,809,898	-				+0.2
4,809,898	-				+0.3
4,809,902	-				-0.7
4,809,902	-				-1.3
4,809,902	-				-1.7
4,809,902	-				-0.5
4,809,902	-				+0.5
4,809,954	+				-0.3
4,809,957	-				+0.8
4,809,962	-				+1.1
4,809,964	+				+0.9
4,809,964	+				+0.7
4,809,964	+				-0.9
4,809,967	-				-0.3
4,809,969	+				-0.8
4,809,969	+				-0.4
4,809,969	+				-0.9
4,809,969	+				-0.5
4,809,969	+				-0.1
4,809,969	+				+0.9
4,809,969	+				+0.4
4,809,972	-				+0.7
4,809,977	-				+0.5
4,809,977	-				-1.8
4,809,977	-				-0.3
4,809,982	-				-2.3
4,809,982	-				-0.6
4,809,986	+				+0.2
4,810,004	-				+0.5
4,810,008	-		GFF4824	0.10	-2.2
4,810,036	+		GFF4824	0.13	-0.9
4,810,052	+		GFF4824	0.15	-0.4
4,810,062	+		GFF4824	0.16	-1.5
4,810,064	+		GFF4824	0.16	-0.5
4,810,072	+		GFF4824	0.17	-0.4
4,810,072	+		GFF4824	0.17	-0.5
4,810,072	+		GFF4824	0.17	+1.2
4,810,072	+		GFF4824	0.17	-1.9
4,810,072	+		GFF4824	0.17	+0.8
4,810,080	-		GFF4824	0.18	+0.4
4,810,080	-		GFF4824	0.18	-1.6
4,810,080	-		GFF4824	0.18	-0.6
4,810,080	-		GFF4824	0.18	-0.0
4,810,080	-		GFF4824	0.18	-1.2
4,810,080	-		GFF4824	0.18	+0.3
4,810,080	-		GFF4824	0.18	+0.1
4,810,102	-		GFF4824	0.20	+0.9
4,810,108	+		GFF4824	0.21	+0.0
4,810,109	+		GFF4824	0.21	+0.7
4,810,110	-		GFF4824	0.21	+0.4
4,810,128	-		GFF4824	0.23	-0.8
4,810,128	-		GFF4824	0.23	-0.4
4,810,128	-		GFF4824	0.23	-0.4
4,810,134	-		GFF4824	0.24	+1.7
4,810,134	-		GFF4824	0.24	+1.2
4,810,151	+		GFF4824	0.26	-1.9
4,810,153	-		GFF4824	0.26	-0.9
4,810,165	+		GFF4824	0.27	+0.9
4,810,165	+		GFF4824	0.27	-0.3
4,810,168	+		GFF4824	0.28	-0.9
4,810,168	+		GFF4824	0.28	-0.6
4,810,173	-		GFF4824	0.28	+0.1
4,810,175	+		GFF4824	0.28	+0.8
4,810,176	-		GFF4824	0.29	+0.2
4,810,176	-		GFF4824	0.29	-0.0
4,810,176	-		GFF4824	0.29	+0.1
4,810,176	-		GFF4824	0.29	-2.1
4,810,176	-		GFF4824	0.29	-0.1
4,810,177	+		GFF4824	0.29	-1.0
4,810,185	-		GFF4824	0.30	+0.4
4,810,198	+		GFF4824	0.31	-0.9
4,810,198	-		GFF4824	0.31	-0.3
4,810,203	+		GFF4824	0.32	-0.3
4,810,204	+		GFF4824	0.32	-0.2
4,810,208	+		GFF4824	0.32	+0.2
4,810,209	+		GFF4824	0.32	-0.6
4,810,209	+		GFF4824	0.32	-0.4
4,810,211	-		GFF4824	0.32	-0.9
4,810,213	+		GFF4824	0.33	+1.0
4,810,216	-		GFF4824	0.33	-2.2
4,810,217	-		GFF4824	0.33	+1.7
4,810,217	-		GFF4824	0.33	-2.0
4,810,221	-		GFF4824	0.34	-0.7
4,810,227	-		GFF4824	0.34	-0.1
4,810,239	+		GFF4824	0.36	+0.8
4,810,239	-		GFF4824	0.36	-1.2
4,810,241	-		GFF4824	0.36	-0.3
4,810,256	+		GFF4824	0.37	-0.4
4,810,256	+		GFF4824	0.37	-2.1
4,810,259	-		GFF4824	0.38	-1.0
4,810,266	+		GFF4824	0.39	+0.6
4,810,266	-		GFF4824	0.39	+0.2
4,810,288	+		GFF4824	0.41	+0.6
4,810,301	+		GFF4824	0.42	-0.1
4,810,309	-		GFF4824	0.43	+0.3
4,810,309	-		GFF4824	0.43	-0.2
4,810,319	+		GFF4824	0.44	+0.4
4,810,325	+		GFF4824	0.45	+0.8
4,810,325	+		GFF4824	0.45	+0.1
4,810,337	+		GFF4824	0.46	+0.3
4,810,355	-		GFF4824	0.48	-0.1
4,810,355	-		GFF4824	0.48	+0.0
4,810,355	-		GFF4824	0.48	+0.4
4,810,357	+		GFF4824	0.49	-0.9
4,810,360	-		GFF4824	0.49	+0.6
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