Strain Fitness in Sphingobium sp. HT1-2 around GFF4810

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,799,060	+		GFF4808	0.41	+0.8
4,799,083	+		GFF4808	0.43	+1.4
4,799,089	+		GFF4808	0.44	-0.2
4,799,089	+		GFF4808	0.44	-0.7
4,799,097	-		GFF4808	0.45	-0.7
4,799,097	-		GFF4808	0.45	+1.4
4,799,097	-		GFF4808	0.45	+0.2
4,799,128	+		GFF4808	0.48	+0.6
4,799,134	-		GFF4808	0.49	+0.1
4,799,141	+		GFF4808	0.50	+0.9
4,799,149	-		GFF4808	0.51	-0.8
4,799,158	+		GFF4808	0.52	+0.8
4,799,166	-		GFF4808	0.52	-1.1
4,799,173	-		GFF4808	0.53	+0.7
4,799,175	+		GFF4808	0.53	+0.3
4,799,233	-		GFF4808	0.60	+1.2
4,799,234	+		GFF4808	0.60	-0.1
4,799,234	+		GFF4808	0.60	+0.6
4,799,234	+		GFF4808	0.60	-1.7
4,799,234	+		GFF4808	0.60	+0.9
4,799,234	+		GFF4808	0.60	+2.2
4,799,234	+		GFF4808	0.60	-1.1
4,799,242	-		GFF4808	0.61	-0.0
4,799,243	+		GFF4808	0.61	+0.5
4,799,243	+		GFF4808	0.61	-0.9
4,799,244	+		GFF4808	0.61	+0.4
4,799,251	-		GFF4808	0.62	-0.4
4,799,251	-		GFF4808	0.62	+0.4
4,799,287	-		GFF4808	0.66	+0.7
4,799,294	+		GFF4808	0.67	-0.5
4,799,294	+		GFF4808	0.67	+1.4
4,799,294	+		GFF4808	0.67	+0.4
4,799,294	+		GFF4808	0.67	+1.0
4,799,299	+		GFF4808	0.67	+0.6
4,799,300	-		GFF4808	0.68	+0.4
4,799,300	-		GFF4808	0.68	+0.5
4,799,302	-		GFF4808	0.68	+1.1
4,799,302	-		GFF4808	0.68	+1.1
4,799,302	-		GFF4808	0.68	+0.5
4,799,302	-		GFF4808	0.68	-2.9
4,799,302	-		GFF4808	0.68	-1.9
4,799,307	-		GFF4808	0.68	-0.2
4,799,307	-		GFF4808	0.68	-2.2
4,799,321	-		GFF4808	0.70	+0.1
4,799,321	-		GFF4808	0.70	+0.2
4,799,354	-		GFF4808	0.74	+1.4
4,799,359	+		GFF4808	0.74	-1.6
4,799,359	-		GFF4808	0.74	-0.1
4,799,359	-		GFF4808	0.74	-0.8
4,799,366	+		GFF4808	0.75	-0.8
4,799,367	-		GFF4808	0.75	-0.2
4,799,374	-		GFF4808	0.76	-0.0
4,799,374	-		GFF4808	0.76	-2.3
4,799,374	-		GFF4808	0.76	-0.3
4,799,374	-		GFF4808	0.76	-0.6
4,799,376	+		GFF4808	0.76	-0.4
4,799,376	+		GFF4808	0.76	-1.1
4,799,376	+		GFF4808	0.76	-1.7
4,799,430	+		GFF4808	0.82	+0.3
4,799,445	-		GFF4808	0.84	-1.0
4,799,445	-		GFF4808	0.84	-0.0
4,799,449	+		GFF4808	0.84	-0.3
4,799,469	-		GFF4808	0.87	-1.2
4,799,477	+		GFF4808	0.88	-0.7
4,799,494	-		GFF4808	0.89	-3.1
4,799,509	+				+1.0
4,799,533	+				+0.5
4,799,550	+				-1.3
4,799,550	+				+1.4
4,799,558	-				+0.1
4,799,572	+				-1.5
4,799,572	+				-0.4
4,799,589	-				-1.3
4,799,590	+				-2.2
4,799,602	-				-0.2
4,799,616	-				+0.3
4,799,627	+		GFF4809	0.11	+0.3
4,799,635	-		GFF4809	0.14	-0.2
4,799,703	+		GFF4809	0.33	+1.0
4,799,703	+		GFF4809	0.33	-1.8
4,799,704	+		GFF4809	0.34	-0.1
4,799,740	+		GFF4809	0.44	+0.0
4,799,740	+		GFF4809	0.44	+0.6
4,799,740	+		GFF4809	0.44	-0.2
4,799,740	+		GFF4809	0.44	+0.5
4,799,748	-		GFF4809	0.46	-1.7
4,799,748	-		GFF4809	0.46	-1.1
4,799,748	-		GFF4809	0.46	-0.4
4,799,748	-		GFF4809	0.46	-0.8
4,799,748	-		GFF4809	0.46	-1.7
4,799,748	-		GFF4809	0.46	-0.2
4,799,748	-		GFF4809	0.46	-0.6
4,799,748	-		GFF4809	0.46	-0.7
4,799,748	-		GFF4809	0.46	-0.0
4,799,748	-		GFF4809	0.46	-0.1
4,799,752	+		GFF4809	0.47	-0.0
4,799,805	-		GFF4809	0.63	-0.2
4,799,825	-		GFF4809	0.68	-1.1
4,799,856	+		GFF4809	0.77	-0.7
4,799,890	+		GFF4809	0.87	+0.9
4,799,905	+				+1.0
4,799,921	+				-0.8
4,800,029	-				-2.6
4,800,048	+				-0.3
4,800,058	+				-0.3
4,800,058	+				-0.2
4,800,058	+				-2.4
4,800,079	-				+1.4
4,800,082	+				+0.0
4,800,082	+				-1.2
4,800,090	-				-1.0
4,800,096	-				+0.4
4,800,122	-				-0.9
4,800,126	+				+0.5
4,800,126	+				-2.6
4,800,126	+				-0.3
4,800,137	-				-1.7
4,800,159	+		GFF4810	0.12	+0.1
4,800,167	-		GFF4810	0.13	+0.9
4,800,167	-		GFF4810	0.13	-1.4
4,800,175	-		GFF4810	0.13	-0.6
4,800,178	+		GFF4810	0.14	-0.3
4,800,216	+		GFF4810	0.18	+0.5
4,800,221	+		GFF4810	0.19	+0.1
4,800,222	-		GFF4810	0.19	+0.5
4,800,224	-		GFF4810	0.19	+0.6
4,800,226	+		GFF4810	0.19	-0.7
4,800,226	+		GFF4810	0.19	+0.2
4,800,234	+		GFF4810	0.20	-0.6
4,800,239	+		GFF4810	0.21	+1.3
4,800,239	+		GFF4810	0.21	+1.0
4,800,247	-		GFF4810	0.21	-0.1
4,800,276	-		GFF4810	0.25	-1.0
4,800,280	-		GFF4810	0.25	+1.1
4,800,289	-		GFF4810	0.26	+0.9
4,800,313	+		GFF4810	0.29	+1.2
4,800,314	-		GFF4810	0.29	-1.8
4,800,318	+		GFF4810	0.29	+0.6
4,800,346	+		GFF4810	0.33	+0.0
4,800,354	-		GFF4810	0.33	-0.2
4,800,354	-		GFF4810	0.33	+0.3
4,800,366	+		GFF4810	0.35	-2.1
4,800,373	+		GFF4810	0.36	+0.4
4,800,373	+		GFF4810	0.36	-0.6
4,800,373	+		GFF4810	0.36	-1.2
4,800,373	+		GFF4810	0.36	-1.6
4,800,376	-		GFF4810	0.36	-0.9
4,800,381	-		GFF4810	0.36	+0.6
4,800,381	-		GFF4810	0.36	+1.4
4,800,381	-		GFF4810	0.36	+0.2
4,800,381	-		GFF4810	0.36	+0.3
4,800,381	-		GFF4810	0.36	-1.5
4,800,381	-		GFF4810	0.36	-0.6
4,800,381	-		GFF4810	0.36	+1.3
4,800,384	+		GFF4810	0.37	-0.8
4,800,394	+		GFF4810	0.38	-1.3
4,800,394	-		GFF4810	0.38	-0.7
4,800,418	+		GFF4810	0.41	-0.2
4,800,425	+		GFF4810	0.41	+0.7
4,800,433	-		GFF4810	0.42	-1.7
4,800,435	+		GFF4810	0.43	+0.9
4,800,435	+		GFF4810	0.43	-0.2
4,800,435	+		GFF4810	0.43	+1.2
4,800,435	+		GFF4810	0.43	-0.5
4,800,440	+		GFF4810	0.43	+0.4
4,800,443	-		GFF4810	0.43	-1.3
4,800,443	-		GFF4810	0.43	+0.2
4,800,443	-		GFF4810	0.43	-0.9
4,800,443	-		GFF4810	0.43	-0.3
4,800,443	-		GFF4810	0.43	+2.2
4,800,443	-		GFF4810	0.43	-0.4
4,800,443	-		GFF4810	0.43	+1.4
4,800,453	-		GFF4810	0.45	+0.3
4,800,471	-		GFF4810	0.47	-0.4
4,800,493	+		GFF4810	0.49	-1.7
4,800,500	+		GFF4810	0.50	+0.7
4,800,500	+		GFF4810	0.50	+0.1
4,800,500	+		GFF4810	0.50	+0.6
4,800,543	+		GFF4810	0.55	+0.1
4,800,585	-		GFF4810	0.59	+1.6
4,800,591	+		GFF4810	0.60	-0.6
4,800,601	+		GFF4810	0.61	-2.1
4,800,626	+		GFF4810	0.64	-0.6
4,800,635	+		GFF4810	0.65	-0.0
4,800,635	+		GFF4810	0.65	-1.7
4,800,635	+		GFF4810	0.65	-0.8
4,800,636	-		GFF4810	0.65	-0.7
4,800,637	+		GFF4810	0.65	+0.4
4,800,645	+		GFF4810	0.66	-1.0
4,800,650	+		GFF4810	0.67	-1.9
4,800,650	+		GFF4810	0.67	-0.3
4,800,653	-		GFF4810	0.67	+1.1
4,800,653	-		GFF4810	0.67	+1.6
4,800,669	+		GFF4810	0.69	+0.8
4,800,677	-		GFF4810	0.70	-1.9
4,800,685	-		GFF4810	0.70	+0.6
4,800,724	+		GFF4810	0.75	+0.3
4,800,744	-		GFF4810	0.77	+0.5
4,800,747	+		GFF4810	0.77	-0.5
4,800,753	+		GFF4810	0.78	+0.5
4,800,783	-		GFF4810	0.81	+0.6
4,800,826	-		GFF4810	0.86	-0.9
4,800,831	-		GFF4810	0.87	-2.4
4,800,831	-		GFF4810	0.87	+0.3
4,800,840	+		GFF4810	0.88	-0.6
4,800,840	+		GFF4810	0.88	+1.3
4,800,845	+		GFF4810	0.88	-0.3
4,800,853	-		GFF4810	0.89	-0.6
4,800,853	-		GFF4810	0.89	+0.2
4,800,873	-				+0.8
4,800,873	-				+0.2
4,800,875	+				-0.8
4,800,883	-				-1.6
4,800,883	-				-0.5
4,800,883	-				+0.6
4,800,900	+				+0.5
4,800,904	+				-3.1
4,800,904	+				+0.8
4,800,904	+				+0.8
4,800,912	-				-0.4
4,800,917	+				-0.0
4,800,929	-				-0.2
4,800,940	-				+0.4
4,800,944	+				+0.2
4,800,949	+				+1.5
4,800,952	-				-0.0
4,800,968	-				-0.6
4,800,970	+				+0.1
4,800,971	-				+0.5
4,800,973	-				-0.1
4,800,973	-				-0.1
4,800,973	-				-0.0
4,800,978	-				-1.0
4,800,980	+				+0.4
4,801,023	+				+0.0
4,801,031	-				-2.1
4,801,031	-				+1.7
4,801,031	-				+0.3
4,801,031	-				+0.6
4,801,045	-				+0.0
4,801,046	-				-0.8
4,801,074	-		GFF4811	0.10	-1.8
4,801,124	+		GFF4811	0.38	-0.3
4,801,124	+		GFF4811	0.38	-0.5
4,801,132	-		GFF4811	0.43	-0.6
4,801,133	-		GFF4811	0.44	-1.1
4,801,143	-		GFF4811	0.49	+1.4
4,801,153	+		GFF4811	0.55	+0.6
4,801,172	+		GFF4811	0.66	+0.4
4,801,194	-		GFF4811	0.78	+0.2
4,801,207	+		GFF4811	0.85	+0.4
4,801,207	+		GFF4811	0.85	-1.0
4,801,215	-				-1.8
4,801,215	-				-0.0
4,801,220	-				+0.7
4,801,230	+				+1.3
4,801,237	-				-1.7
4,801,239	+				-2.0
4,801,245	-		GFF4812	0.10	-0.3
4,801,247	-		GFF4812	0.12	-1.8
4,801,254	+		GFF4812	0.16	+0.1
4,801,254	+		GFF4812	0.16	+0.5
4,801,262	-		GFF4812	0.22	-0.8
4,801,262	-		GFF4812	0.22	-0.9
4,801,267	-		GFF4812	0.25	-0.5
4,801,277	+		GFF4812	0.31	-0.6
4,801,277	+		GFF4812	0.31	+1.0
4,801,285	-		GFF4812	0.37	-0.3
4,801,286	-		GFF4812	0.37	-0.4
4,801,301	-		GFF4812	0.47	+1.0
4,801,326	+		GFF4812	0.63	-0.0
4,801,334	-		GFF4812	0.69	-2.1
4,801,344	-		GFF4812	0.75	-0.8
4,801,360	-		GFF4812	0.86	+0.4
4,801,374	+				+1.0
4,801,376	+				+0.6
4,801,384	+				+0.3
4,801,419	+				-0.7
4,801,422	+				+0.5
4,801,427	-				-0.2
4,801,482	+				+0.3
4,801,520	+				-0.6
4,801,520	+				+0.8
4,801,520	+				+0.3
4,801,520	+				+0.4
4,801,523	-				-0.6
4,801,528	-				+0.0
4,801,528	-				-0.5
4,801,528	-				+0.9
4,801,528	-				-0.9
4,801,528	-				-0.2
4,801,528	-				-1.4
4,801,535	+				-0.1
4,801,539	-				-0.1
4,801,565	-				+0.8
4,801,568	+				-0.1
4,801,571	-				+0.7
4,801,579	-				-0.0
4,801,630	-				+0.1
4,801,670	+				+1.1
4,801,679	+				-0.8
4,801,689	+				-0.3
4,801,700	+				-1.0
4,801,700	+				+0.6
4,801,706	-				-0.2
4,801,706	-				+0.3
4,801,708	-				+0.8
4,801,714	-				+1.3
4,801,776	+				+0.9
4,801,808	+		GFF4813	0.20	+0.5
4,801,808	+		GFF4813	0.20	+0.0
4,801,824	+		GFF4813	0.31	-0.3
4,801,838	-		GFF4813	0.41	-0.7
4,801,844	+		GFF4813	0.45	-2.3
4,801,844	+		GFF4813	0.45	-0.1
4,801,844	+		GFF4813	0.45	-0.7
4,801,844	+		GFF4813	0.45	+0.6
4,801,844	+		GFF4813	0.45	+0.1
4,801,844	+		GFF4813	0.45	+0.5
4,801,844	+		GFF4813	0.45	-1.4
4,801,844	+		GFF4813	0.45	-0.4
4,801,849	+		GFF4813	0.48	-1.4
4,801,852	-		GFF4813	0.50	-0.3
4,801,852	-		GFF4813	0.50	+1.1
4,801,854	+		GFF4813	0.52	-0.2
4,801,854	+		GFF4813	0.52	-0.1
4,801,854	+		GFF4813	0.52	+0.3
4,801,917	-				+1.3
4,801,922	-				-0.3
4,801,923	+				-0.3
4,801,929	-				-0.3
4,801,929	-				-0.3
4,801,931	-				+0.3