Strain Fitness in Sphingobium sp. HT1-2 around GFF479

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF477 and GFF478 overlap by 1 nucleotidesGFF478 and GFF479 overlap by 1 nucleotidesGFF479 and GFF480 are separated by 172 nucleotides GFF477 - Succinate dehydrogenase flavoprotein subunit (EC 1.3.5.1), at 477,787 to 479,601 GFF477 GFF478 - Succinate dehydrogenase hydrophobic membrane anchor protein, at 479,601 to 479,990 GFF478 GFF479 - Succinate dehydrogenase cytochrome b-556 subunit, at 479,990 to 480,385 GFF479 GFF480 - Methyl-accepting chemotaxis sensor/transducer protein, at 480,558 to 481,889 GFF480 Position (kb) 479 480 481Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 480.393 kb on - strandat 480.393 kb on - strandat 480.423 kb on + strandat 480.423 kb on + strandat 480.456 kb on + strandat 480.456 kb on - strandat 480.461 kb on + strandat 480.465 kb on + strandat 480.473 kb on - strandat 480.484 kb on + strandat 480.484 kb on + strandat 480.512 kb on + strandat 480.520 kb on - strandat 480.522 kb on + strandat 480.523 kb on - strandat 480.530 kb on - strandat 480.539 kb on + strandat 480.581 kb on - strandat 480.591 kb on + strandat 480.592 kb on + strandat 480.599 kb on - strandat 480.600 kb on - strandat 480.600 kb on - strandat 480.607 kb on + strandat 480.614 kb on + strandat 480.615 kb on - strandat 480.615 kb on - strandat 480.619 kb on + strandat 480.624 kb on + strandat 480.624 kb on + strandat 480.624 kb on + strandat 480.624 kb on + strandat 480.624 kb on + strandat 480.624 kb on + strandat 480.624 kb on + strandat 480.624 kb on + strandat 480.624 kb on + strandat 480.627 kb on - strandat 480.627 kb on - strandat 480.632 kb on - strandat 480.632 kb on - strandat 480.632 kb on - strandat 480.632 kb on - strandat 480.632 kb on - strandat 480.632 kb on - strandat 480.632 kb on - strandat 480.632 kb on - strandat 480.641 kb on + strandat 480.646 kb on + strandat 480.699 kb on - strand, within GFF480at 480.703 kb on - strand, within GFF480at 480.715 kb on + strand, within GFF480at 480.715 kb on + strand, within GFF480at 480.715 kb on + strand, within GFF480at 480.715 kb on + strand, within GFF480at 480.715 kb on + strand, within GFF480at 480.715 kb on + strand, within GFF480at 480.715 kb on + strand, within GFF480at 480.715 kb on - strand, within GFF480at 480.721 kb on - strand, within GFF480at 480.723 kb on - strand, within GFF480at 480.723 kb on - strand, within GFF480at 480.723 kb on - strand, within GFF480at 480.723 kb on - strand, within GFF480at 480.723 kb on - strand, within GFF480at 480.740 kb on + strand, within GFF480at 480.748 kb on - strand, within GFF480at 480.752 kb on + strand, within GFF480at 480.752 kb on + strand, within GFF480at 480.758 kb on + strand, within GFF480at 480.758 kb on + strand, within GFF480at 480.758 kb on + strand, within GFF480at 480.760 kb on - strand, within GFF480at 480.782 kb on - strand, within GFF480at 480.798 kb on + strand, within GFF480at 480.810 kb on + strand, within GFF480at 480.827 kb on + strand, within GFF480at 480.827 kb on + strand, within GFF480at 480.827 kb on + strand, within GFF480at 480.827 kb on + strand, within GFF480at 480.827 kb on + strand, within GFF480at 480.827 kb on + strand, within GFF480at 480.827 kb on + strand, within GFF480at 480.827 kb on + strand, within GFF480at 480.829 kb on + strand, within GFF480at 480.830 kb on - strand, within GFF480at 480.830 kb on - strand, within GFF480at 480.830 kb on - strand, within GFF480at 480.830 kb on - strand, within GFF480at 480.835 kb on - strand, within GFF480at 480.835 kb on - strand, within GFF480at 480.835 kb on - strand, within GFF480at 480.835 kb on - strand, within GFF480at 480.835 kb on - strand, within GFF480at 480.835 kb on - strand, within GFF480at 480.835 kb on - strand, within GFF480at 480.835 kb on - strand, within GFF480at 480.835 kb on - strand, within GFF480at 480.841 kb on + strand, within GFF480at 480.880 kb on + strand, within GFF480at 480.882 kb on + strand, within GFF480at 480.885 kb on + strand, within GFF480at 480.949 kb on + strand, within GFF480at 480.949 kb on + strand, within GFF480at 480.968 kb on + strand, within GFF480at 480.968 kb on + strand, within GFF480at 480.977 kb on - strand, within GFF480at 480.981 kb on + strand, within GFF480at 480.986 kb on + strand, within GFF480at 480.986 kb on + strand, within GFF480at 480.986 kb on + strand, within GFF480at 480.986 kb on + strand, within GFF480at 480.994 kb on - strand, within GFF480at 480.994 kb on - strand, within GFF480at 480.994 kb on - strand, within GFF480at 480.995 kb on + strand, within GFF480at 481.000 kb on + strand, within GFF480at 481.003 kb on - strand, within GFF480at 481.008 kb on - strand, within GFF480at 481.047 kb on - strand, within GFF480at 481.047 kb on - strand, within GFF480at 481.067 kb on - strand, within GFF480at 481.067 kb on - strand, within GFF480at 481.119 kb on + strand, within GFF480at 481.134 kb on - strand, within GFF480at 481.145 kb on + strand, within GFF480at 481.145 kb on + strand, within GFF480at 481.145 kb on + strand, within GFF480at 481.145 kb on + strand, within GFF480at 481.145 kb on + strand, within GFF480at 481.145 kb on + strand, within GFF480at 481.145 kb on + strand, within GFF480at 481.145 kb on + strand, within GFF480at 481.145 kb on + strand, within GFF480at 481.145 kb on + strand, within GFF480at 481.153 kb on - strand, within GFF480at 481.153 kb on - strand, within GFF480at 481.153 kb on - strand, within GFF480at 481.153 kb on - strand, within GFF480at 481.153 kb on - strand, within GFF480at 481.153 kb on - strand, within GFF480at 481.153 kb on - strand, within GFF480at 481.153 kb on - strand, within GFF480at 481.153 kb on - strand, within GFF480at 481.153 kb on - strand, within GFF480at 481.169 kb on - strand, within GFF480at 481.181 kb on + strand, within GFF480at 481.195 kb on - strand, within GFF480at 481.223 kb on - strand, within GFF480at 481.223 kb on - strand, within GFF480at 481.224 kb on + strand, within GFF480at 481.240 kb on - strand, within GFF480at 481.242 kb on + strand, within GFF480at 481.247 kb on + strand, within GFF480at 481.250 kb on - strand, within GFF480at 481.252 kb on + strand, within GFF480at 481.257 kb on + strand, within GFF480at 481.257 kb on + strand, within GFF480at 481.257 kb on + strand, within GFF480at 481.257 kb on + strand, within GFF480at 481.257 kb on + strand, within GFF480at 481.257 kb on + strand, within GFF480at 481.265 kb on - strand, within GFF480at 481.265 kb on - strand, within GFF480at 481.265 kb on - strand, within GFF480at 481.265 kb on - strand, within GFF480at 481.265 kb on - strand, within GFF480at 481.265 kb on - strand, within GFF480at 481.303 kb on + strand, within GFF480at 481.317 kb on - strand, within GFF480at 481.319 kb on - strand, within GFF480at 481.327 kb on + strand, within GFF480at 481.366 kb on + strand, within GFF480at 481.373 kb on - strand, within GFF480at 481.374 kb on - strand, within GFF480at 481.383 kb on - strand, within GFF480

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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480,393 - +0.1
480,393 - +0.5
480,423 + -1.7
480,423 + -2.3
480,456 + +0.2
480,456 - -1.6
480,461 + +0.7
480,465 + -1.5
480,473 - -0.1
480,484 + +0.5
480,484 + -1.5
480,512 + -2.0
480,520 - -0.7
480,522 + -0.2
480,523 - +0.4
480,530 - -2.1
480,539 + -0.4
480,581 - +0.9
480,591 + +0.6
480,592 + -0.2
480,599 - +0.9
480,600 - +0.4
480,600 - +2.2
480,607 + -0.5
480,614 + -0.4
480,615 - -0.9
480,615 - +1.3
480,619 + -0.4
480,624 + -0.1
480,624 + -2.1
480,624 + -0.1
480,624 + -0.5
480,624 + -0.3
480,624 + +0.6
480,624 + -1.0
480,624 + -1.1
480,624 + -1.6
480,627 - -0.1
480,627 - +0.5
480,632 - +0.2
480,632 - -0.3
480,632 - -2.2
480,632 - -0.4
480,632 - -0.2
480,632 - +0.4
480,632 - -0.3
480,632 - +1.0
480,641 + -1.3
480,646 + -1.4
480,699 - GFF480 0.11 -0.8
480,703 - GFF480 0.11 -0.4
480,715 + GFF480 0.12 -2.2
480,715 + GFF480 0.12 -2.5
480,715 + GFF480 0.12 -1.6
480,715 + GFF480 0.12 +0.5
480,715 + GFF480 0.12 +0.6
480,715 + GFF480 0.12 +0.4
480,715 + GFF480 0.12 -0.4
480,715 - GFF480 0.12 +0.6
480,721 - GFF480 0.12 -0.7
480,723 - GFF480 0.12 -1.4
480,723 - GFF480 0.12 -0.6
480,723 - GFF480 0.12 +0.2
480,723 - GFF480 0.12 +0.2
480,723 - GFF480 0.12 +0.2
480,740 + GFF480 0.14 -0.1
480,748 - GFF480 0.14 +1.6
480,752 + GFF480 0.15 +0.2
480,752 + GFF480 0.15 -1.7
480,758 + GFF480 0.15 -0.4
480,758 + GFF480 0.15 +0.1
480,758 + GFF480 0.15 -0.5
480,760 - GFF480 0.15 -0.5
480,782 - GFF480 0.17 -1.1
480,798 + GFF480 0.18 -1.1
480,810 + GFF480 0.19 +0.4
480,827 + GFF480 0.20 -2.7
480,827 + GFF480 0.20 -2.0
480,827 + GFF480 0.20 +0.6
480,827 + GFF480 0.20 +0.4
480,827 + GFF480 0.20 -1.4
480,827 + GFF480 0.20 -0.2
480,827 + GFF480 0.20 -0.0
480,827 + GFF480 0.20 -1.2
480,829 + GFF480 0.20 -0.4
480,830 - GFF480 0.20 -1.2
480,830 - GFF480 0.20 -0.5
480,830 - GFF480 0.20 -0.6
480,830 - GFF480 0.20 -0.4
480,835 - GFF480 0.21 -0.8
480,835 - GFF480 0.21 +0.5
480,835 - GFF480 0.21 -2.5
480,835 - GFF480 0.21 -2.8
480,835 - GFF480 0.21 -0.3
480,835 - GFF480 0.21 -2.0
480,835 - GFF480 0.21 -1.1
480,835 - GFF480 0.21 -1.6
480,835 - GFF480 0.21 +0.4
480,841 + GFF480 0.21 -2.0
480,880 + GFF480 0.24 +0.5
480,882 + GFF480 0.24 -1.1
480,885 + GFF480 0.25 -1.7
480,949 + GFF480 0.29 -0.2
480,949 + GFF480 0.29 +0.1
480,968 + GFF480 0.31 +0.7
480,968 + GFF480 0.31 -1.6
480,977 - GFF480 0.31 -1.0
480,981 + GFF480 0.32 -2.0
480,986 + GFF480 0.32 -0.1
480,986 + GFF480 0.32 +0.3
480,986 + GFF480 0.32 +2.5
480,986 + GFF480 0.32 -1.1
480,994 - GFF480 0.33 -0.2
480,994 - GFF480 0.33 -0.5
480,994 - GFF480 0.33 -1.7
480,995 + GFF480 0.33 -1.1
481,000 + GFF480 0.33 -2.2
481,003 - GFF480 0.33 +0.9
481,008 - GFF480 0.34 +0.5
481,047 - GFF480 0.37 -0.4
481,047 - GFF480 0.37 -0.4
481,067 - GFF480 0.38 +0.9
481,067 - GFF480 0.38 +0.1
481,119 + GFF480 0.42 +0.1
481,134 - GFF480 0.43 -1.6
481,145 + GFF480 0.44 -1.1
481,145 + GFF480 0.44 -1.2
481,145 + GFF480 0.44 -3.2
481,145 + GFF480 0.44 -1.6
481,145 + GFF480 0.44 +0.4
481,145 + GFF480 0.44 -0.2
481,145 + GFF480 0.44 -0.8
481,145 + GFF480 0.44 -0.9
481,145 + GFF480 0.44 +0.3
481,145 + GFF480 0.44 +0.4
481,153 - GFF480 0.45 -0.3
481,153 - GFF480 0.45 -1.4
481,153 - GFF480 0.45 +1.7
481,153 - GFF480 0.45 +0.4
481,153 - GFF480 0.45 -0.1
481,153 - GFF480 0.45 +0.4
481,153 - GFF480 0.45 +1.1
481,153 - GFF480 0.45 -2.3
481,153 - GFF480 0.45 -1.1
481,153 - GFF480 0.45 +0.9
481,169 - GFF480 0.46 +0.0
481,181 + GFF480 0.47 -0.2
481,195 - GFF480 0.48 +0.3
481,223 - GFF480 0.50 +0.0
481,223 - GFF480 0.50 -1.1
481,224 + GFF480 0.50 -0.9
481,240 - GFF480 0.51 +0.6
481,242 + GFF480 0.51 -0.1
481,247 + GFF480 0.52 +0.5
481,250 - GFF480 0.52 -1.2
481,252 + GFF480 0.52 +0.0
481,257 + GFF480 0.52 -0.1
481,257 + GFF480 0.52 +0.2
481,257 + GFF480 0.52 -1.5
481,257 + GFF480 0.52 +0.6
481,257 + GFF480 0.52 -0.0
481,257 + GFF480 0.52 +1.8
481,265 - GFF480 0.53 -0.6
481,265 - GFF480 0.53 -1.3
481,265 - GFF480 0.53 -1.6
481,265 - GFF480 0.53 -0.7
481,265 - GFF480 0.53 -0.4
481,265 - GFF480 0.53 +0.5
481,303 + GFF480 0.56 +0.4
481,317 - GFF480 0.57 -1.7
481,319 - GFF480 0.57 -1.7
481,327 + GFF480 0.58 -1.1
481,366 + GFF480 0.61 -0.5
481,373 - GFF480 0.61 -1.0
481,374 - GFF480 0.61 -1.3
481,383 - GFF480 0.62 -1.1

Or see this region's nucleotide sequence