Strain Fitness in Sphingobium sp. HT1-2 around GFF4773

Experiment: EMM_noCarbon with Sucrose and Putrescine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4772 and GFF4773 are separated by 14 nucleotidesGFF4773 and GFF4774 are separated by 84 nucleotidesGFF4774 and GFF4775 are separated by 1 nucleotides GFF4772 - Cytochrome c oxidase polypeptide II (EC 1.9.3.1), at 4,767,894 to 4,768,901 GFF4772 GFF4773 - hypothetical protein, at 4,768,916 to 4,769,101 GFF4773 GFF4774 - Orotate phosphoribosyltransferase (EC 2.4.2.10), at 4,769,186 to 4,769,767 GFF4774 GFF4775 - 'Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)' transl_table=11, at 4,769,769 to 4,770,500 GFF4775 Position (kb) 4768 4769 4770Strain fitness (log2 ratio) -3 -2 -1 0 1at 4767.946 kb on + strandat 4767.946 kb on + strandat 4767.997 kb on + strand, within GFF4772at 4767.997 kb on + strand, within GFF4772at 4768.002 kb on + strand, within GFF4772at 4768.002 kb on + strand, within GFF4772at 4768.003 kb on - strand, within GFF4772at 4768.005 kb on - strand, within GFF4772at 4768.008 kb on + strand, within GFF4772at 4768.025 kb on + strand, within GFF4772at 4768.025 kb on + strand, within GFF4772at 4768.038 kb on - strand, within GFF4772at 4768.040 kb on - strand, within GFF4772at 4768.045 kb on + strand, within GFF4772at 4768.045 kb on + strand, within GFF4772at 4768.050 kb on - strand, within GFF4772at 4768.052 kb on + strand, within GFF4772at 4768.052 kb on + strand, within GFF4772at 4768.055 kb on - strand, within GFF4772at 4768.060 kb on - strand, within GFF4772at 4768.072 kb on - strand, within GFF4772at 4768.101 kb on - strand, within GFF4772at 4768.113 kb on - strand, within GFF4772at 4768.113 kb on - strand, within GFF4772at 4768.126 kb on + strand, within GFF4772at 4768.133 kb on + strand, within GFF4772at 4768.133 kb on + strand, within GFF4772at 4768.133 kb on + strand, within GFF4772at 4768.134 kb on - strand, within GFF4772at 4768.134 kb on - strand, within GFF4772at 4768.134 kb on - strand, within GFF4772at 4768.138 kb on + strand, within GFF4772at 4768.141 kb on - strand, within GFF4772at 4768.141 kb on - strand, within GFF4772at 4768.141 kb on - strand, within GFF4772at 4768.151 kb on - strand, within GFF4772at 4768.154 kb on + strand, within GFF4772at 4768.154 kb on + strand, within GFF4772at 4768.154 kb on + strand, within GFF4772at 4768.162 kb on - strand, within GFF4772at 4768.191 kb on - strand, within GFF4772at 4768.192 kb on + strand, within GFF4772at 4768.223 kb on + strand, within GFF4772at 4768.226 kb on - strand, within GFF4772at 4768.244 kb on + strand, within GFF4772at 4768.250 kb on - strand, within GFF4772at 4768.252 kb on - strand, within GFF4772at 4768.267 kb on + strand, within GFF4772at 4768.267 kb on + strand, within GFF4772at 4768.331 kb on - strand, within GFF4772at 4768.338 kb on - strand, within GFF4772at 4768.340 kb on + strand, within GFF4772at 4768.348 kb on + strand, within GFF4772at 4768.355 kb on + strand, within GFF4772at 4768.355 kb on + strand, within GFF4772at 4768.355 kb on + strand, within GFF4772at 4768.373 kb on - strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.448 kb on + strand, within GFF4772at 4768.464 kb on - strand, within GFF4772at 4768.479 kb on + strand, within GFF4772at 4768.485 kb on - strand, within GFF4772at 4768.487 kb on - strand, within GFF4772at 4768.489 kb on + strand, within GFF4772at 4768.489 kb on + strand, within GFF4772at 4768.489 kb on + strand, within GFF4772at 4768.489 kb on + strand, within GFF4772at 4768.489 kb on - strand, within GFF4772at 4768.507 kb on - strand, within GFF4772at 4768.513 kb on - strand, within GFF4772at 4768.513 kb on - strand, within GFF4772at 4768.529 kb on + strand, within GFF4772at 4768.529 kb on + strand, within GFF4772at 4768.529 kb on + strand, within GFF4772at 4768.529 kb on + strand, within GFF4772at 4768.529 kb on + strand, within GFF4772at 4768.537 kb on - strand, within GFF4772at 4768.537 kb on - strand, within GFF4772at 4768.594 kb on + strand, within GFF4772at 4768.597 kb on - strand, within GFF4772at 4768.597 kb on - strand, within GFF4772at 4768.598 kb on + strand, within GFF4772at 4768.619 kb on + strand, within GFF4772at 4768.619 kb on + strand, within GFF4772at 4768.635 kb on - strand, within GFF4772at 4768.654 kb on - strand, within GFF4772at 4768.712 kb on + strand, within GFF4772at 4768.712 kb on + strand, within GFF4772at 4768.737 kb on - strand, within GFF4772at 4768.737 kb on - strand, within GFF4772at 4768.782 kb on + strand, within GFF4772at 4768.790 kb on - strand, within GFF4772at 4768.794 kb on + strand, within GFF4772at 4768.810 kb on + strandat 4768.810 kb on + strandat 4768.867 kb on + strandat 4768.885 kb on - strandat 4768.893 kb on - strandat 4768.907 kb on + strandat 4768.907 kb on + strandat 4768.907 kb on + strandat 4768.907 kb on + strandat 4768.907 kb on + strandat 4768.907 kb on + strandat 4768.911 kb on - strandat 4768.914 kb on + strandat 4768.914 kb on + strandat 4768.915 kb on + strandat 4768.915 kb on - strandat 4768.915 kb on - strandat 4768.915 kb on - strandat 4768.915 kb on - strandat 4768.920 kb on - strandat 4768.922 kb on - strandat 4768.922 kb on - strandat 4768.930 kb on - strandat 4768.969 kb on - strand, within GFF4773at 4768.969 kb on - strand, within GFF4773at 4768.969 kb on - strand, within GFF4773at 4768.969 kb on - strand, within GFF4773at 4768.988 kb on + strand, within GFF4773at 4769.022 kb on + strand, within GFF4773at 4769.022 kb on + strand, within GFF4773at 4769.054 kb on - strand, within GFF4773at 4769.070 kb on + strand, within GFF4773at 4769.070 kb on + strand, within GFF4773at 4769.070 kb on + strand, within GFF4773at 4769.082 kb on + strand, within GFF4773at 4769.082 kb on + strand, within GFF4773at 4769.082 kb on + strand, within GFF4773at 4769.082 kb on + strand, within GFF4773at 4769.082 kb on + strand, within GFF4773at 4769.082 kb on + strand, within GFF4773at 4769.107 kb on + strandat 4769.169 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
remove
4,767,946 + -2.0
4,767,946 + -0.3
4,767,997 + GFF4772 0.10 -1.9
4,767,997 + GFF4772 0.10 -1.3
4,768,002 + GFF4772 0.11 +0.1
4,768,002 + GFF4772 0.11 -2.1
4,768,003 - GFF4772 0.11 -0.9
4,768,005 - GFF4772 0.11 -0.2
4,768,008 + GFF4772 0.11 +0.3
4,768,025 + GFF4772 0.13 -0.6
4,768,025 + GFF4772 0.13 -1.0
4,768,038 - GFF4772 0.14 -0.5
4,768,040 - GFF4772 0.14 -1.2
4,768,045 + GFF4772 0.15 -0.1
4,768,045 + GFF4772 0.15 -0.9
4,768,050 - GFF4772 0.15 -0.0
4,768,052 + GFF4772 0.16 -1.5
4,768,052 + GFF4772 0.16 -2.4
4,768,055 - GFF4772 0.16 +1.2
4,768,060 - GFF4772 0.16 -0.4
4,768,072 - GFF4772 0.18 -0.5
4,768,101 - GFF4772 0.21 -1.7
4,768,113 - GFF4772 0.22 -1.1
4,768,113 - GFF4772 0.22 -0.7
4,768,126 + GFF4772 0.23 -2.3
4,768,133 + GFF4772 0.24 -1.6
4,768,133 + GFF4772 0.24 -2.0
4,768,133 + GFF4772 0.24 -0.4
4,768,134 - GFF4772 0.24 -2.3
4,768,134 - GFF4772 0.24 -0.5
4,768,134 - GFF4772 0.24 -1.1
4,768,138 + GFF4772 0.24 -3.3
4,768,141 - GFF4772 0.25 -1.7
4,768,141 - GFF4772 0.25 -2.3
4,768,141 - GFF4772 0.25 -0.7
4,768,151 - GFF4772 0.25 -1.0
4,768,154 + GFF4772 0.26 -0.7
4,768,154 + GFF4772 0.26 -2.7
4,768,154 + GFF4772 0.26 +0.5
4,768,162 - GFF4772 0.27 -1.2
4,768,191 - GFF4772 0.29 +0.2
4,768,192 + GFF4772 0.30 -1.1
4,768,223 + GFF4772 0.33 -0.2
4,768,226 - GFF4772 0.33 -0.9
4,768,244 + GFF4772 0.35 -2.1
4,768,250 - GFF4772 0.35 -2.1
4,768,252 - GFF4772 0.36 -0.9
4,768,267 + GFF4772 0.37 -1.8
4,768,267 + GFF4772 0.37 +1.0
4,768,331 - GFF4772 0.43 -1.2
4,768,338 - GFF4772 0.44 -2.2
4,768,340 + GFF4772 0.44 -1.8
4,768,348 + GFF4772 0.45 -2.3
4,768,355 + GFF4772 0.46 -2.0
4,768,355 + GFF4772 0.46 -0.8
4,768,355 + GFF4772 0.46 -1.8
4,768,373 - GFF4772 0.48 -0.9
4,768,384 + GFF4772 0.49 -1.1
4,768,384 + GFF4772 0.49 -1.9
4,768,384 + GFF4772 0.49 -0.9
4,768,384 + GFF4772 0.49 -1.5
4,768,384 + GFF4772 0.49 -1.7
4,768,384 + GFF4772 0.49 -1.5
4,768,384 + GFF4772 0.49 -0.3
4,768,384 + GFF4772 0.49 -2.2
4,768,384 + GFF4772 0.49 -1.9
4,768,384 + GFF4772 0.49 -1.7
4,768,384 + GFF4772 0.49 -0.8
4,768,384 + GFF4772 0.49 -0.6
4,768,384 + GFF4772 0.49 -0.1
4,768,384 + GFF4772 0.49 -1.8
4,768,384 + GFF4772 0.49 -2.1
4,768,384 + GFF4772 0.49 -0.6
4,768,392 - GFF4772 0.49 +0.6
4,768,392 - GFF4772 0.49 -0.9
4,768,392 - GFF4772 0.49 -0.3
4,768,392 - GFF4772 0.49 -0.4
4,768,392 - GFF4772 0.49 -1.9
4,768,392 - GFF4772 0.49 -2.3
4,768,392 - GFF4772 0.49 -1.3
4,768,392 - GFF4772 0.49 -0.8
4,768,392 - GFF4772 0.49 -0.4
4,768,392 - GFF4772 0.49 -1.2
4,768,392 - GFF4772 0.49 +0.8
4,768,392 - GFF4772 0.49 -1.1
4,768,392 - GFF4772 0.49 -1.9
4,768,392 - GFF4772 0.49 -1.6
4,768,392 - GFF4772 0.49 -2.3
4,768,392 - GFF4772 0.49 -0.8
4,768,392 - GFF4772 0.49 -1.4
4,768,392 - GFF4772 0.49 -1.3
4,768,392 - GFF4772 0.49 -1.8
4,768,392 - GFF4772 0.49 -0.4
4,768,392 - GFF4772 0.49 +1.0
4,768,392 - GFF4772 0.49 -1.0
4,768,392 - GFF4772 0.49 -0.7
4,768,392 - GFF4772 0.49 -0.7
4,768,392 - GFF4772 0.49 -0.8
4,768,392 - GFF4772 0.49 +0.2
4,768,392 - GFF4772 0.49 -1.0
4,768,392 - GFF4772 0.49 -1.3
4,768,392 - GFF4772 0.49 -0.9
4,768,392 - GFF4772 0.49 -2.3
4,768,392 - GFF4772 0.49 -2.0
4,768,392 - GFF4772 0.49 -1.0
4,768,392 - GFF4772 0.49 -1.7
4,768,392 - GFF4772 0.49 +0.9
4,768,392 - GFF4772 0.49 -1.7
4,768,392 - GFF4772 0.49 -1.7
4,768,392 - GFF4772 0.49 -0.1
4,768,392 - GFF4772 0.49 -0.5
4,768,392 - GFF4772 0.49 -0.2
4,768,392 - GFF4772 0.49 -1.7
4,768,392 - GFF4772 0.49 -0.3
4,768,392 - GFF4772 0.49 -1.3
4,768,392 - GFF4772 0.49 -1.7
4,768,448 + GFF4772 0.55 -0.1
4,768,464 - GFF4772 0.57 -2.0
4,768,479 + GFF4772 0.58 -1.0
4,768,485 - GFF4772 0.59 -2.8
4,768,487 - GFF4772 0.59 -1.3
4,768,489 + GFF4772 0.59 -0.8
4,768,489 + GFF4772 0.59 -2.3
4,768,489 + GFF4772 0.59 -3.0
4,768,489 + GFF4772 0.59 -3.0
4,768,489 - GFF4772 0.59 -0.2
4,768,507 - GFF4772 0.61 -2.4
4,768,513 - GFF4772 0.61 -0.5
4,768,513 - GFF4772 0.61 -1.2
4,768,529 + GFF4772 0.63 -0.4
4,768,529 + GFF4772 0.63 -2.5
4,768,529 + GFF4772 0.63 +0.2
4,768,529 + GFF4772 0.63 -0.1
4,768,529 + GFF4772 0.63 -1.6
4,768,537 - GFF4772 0.64 -1.1
4,768,537 - GFF4772 0.64 -0.6
4,768,594 + GFF4772 0.69 -3.1
4,768,597 - GFF4772 0.70 -2.3
4,768,597 - GFF4772 0.70 -0.0
4,768,598 + GFF4772 0.70 +1.1
4,768,619 + GFF4772 0.72 -0.8
4,768,619 + GFF4772 0.72 +0.1
4,768,635 - GFF4772 0.74 -2.0
4,768,654 - GFF4772 0.75 -0.0
4,768,712 + GFF4772 0.81 -1.0
4,768,712 + GFF4772 0.81 +0.1
4,768,737 - GFF4772 0.84 +0.0
4,768,737 - GFF4772 0.84 -0.0
4,768,782 + GFF4772 0.88 -0.6
4,768,790 - GFF4772 0.89 -1.9
4,768,794 + GFF4772 0.89 -1.3
4,768,810 + -0.5
4,768,810 + -1.4
4,768,867 + -1.7
4,768,885 - -1.1
4,768,893 - -1.7
4,768,907 + -2.1
4,768,907 + -0.9
4,768,907 + -0.2
4,768,907 + -0.8
4,768,907 + -3.0
4,768,907 + -0.2
4,768,911 - -2.0
4,768,914 + +0.3
4,768,914 + +0.2
4,768,915 + -1.7
4,768,915 - -1.0
4,768,915 - -1.3
4,768,915 - -1.2
4,768,915 - -0.4
4,768,920 - +0.7
4,768,922 - -0.7
4,768,922 - -0.9
4,768,930 - +0.5
4,768,969 - GFF4773 0.28 -0.5
4,768,969 - GFF4773 0.28 +0.7
4,768,969 - GFF4773 0.28 -2.1
4,768,969 - GFF4773 0.28 -1.8
4,768,988 + GFF4773 0.39 +0.3
4,769,022 + GFF4773 0.57 -0.8
4,769,022 + GFF4773 0.57 -0.1
4,769,054 - GFF4773 0.74 +0.5
4,769,070 + GFF4773 0.83 -1.6
4,769,070 + GFF4773 0.83 -3.2
4,769,070 + GFF4773 0.83 +0.2
4,769,082 + GFF4773 0.89 -1.4
4,769,082 + GFF4773 0.89 -1.7
4,769,082 + GFF4773 0.89 -2.1
4,769,082 + GFF4773 0.89 +0.5
4,769,082 + GFF4773 0.89 -1.7
4,769,082 + GFF4773 0.89 -1.1
4,769,107 + -0.4
4,769,169 + -2.1

Or see this region's nucleotide sequence