Strain Fitness in Sphingobium sp. HT1-2 around GFF477

Experiment: EMM_noCarbon with Sucrose and Putrescine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF475 and GFF476 are separated by 9 nucleotidesGFF476 and GFF477 are separated by 124 nucleotidesGFF477 and GFF478 overlap by 1 nucleotidesGFF478 and GFF479 overlap by 1 nucleotidesGFF479 and GFF480 are separated by 172 nucleotides GFF475 - hypothetical protein, at 476,562 to 477,026 GFF475 GFF476 - hypothetical protein, at 477,036 to 477,662 GFF476 GFF477 - Succinate dehydrogenase flavoprotein subunit (EC 1.3.5.1), at 477,787 to 479,601 GFF477 GFF478 - Succinate dehydrogenase hydrophobic membrane anchor protein, at 479,601 to 479,990 GFF478 GFF479 - Succinate dehydrogenase cytochrome b-556 subunit, at 479,990 to 480,385 GFF479 GFF480 - Methyl-accepting chemotaxis sensor/transducer protein, at 480,558 to 481,889 GFF480 Position (kb) 477 478 479 480Strain fitness (log2 ratio) -2 -1 0 1 2at 476.791 kb on + strand, within GFF475at 476.801 kb on + strand, within GFF475at 476.805 kb on - strand, within GFF475at 476.885 kb on + strand, within GFF475at 476.885 kb on + strand, within GFF475at 476.903 kb on + strand, within GFF475at 476.911 kb on - strand, within GFF475at 476.929 kb on - strand, within GFF475at 476.941 kb on + strand, within GFF475at 476.941 kb on + strand, within GFF475at 476.941 kb on + strand, within GFF475at 476.941 kb on + strand, within GFF475at 476.949 kb on - strand, within GFF475at 476.949 kb on - strand, within GFF475at 476.949 kb on - strand, within GFF475at 476.949 kb on - strand, within GFF475at 476.965 kb on - strand, within GFF475at 476.974 kb on - strand, within GFF475at 476.986 kb on - strandat 477.003 kb on + strandat 477.011 kb on - strandat 477.015 kb on + strandat 477.015 kb on + strandat 477.023 kb on - strandat 477.028 kb on - strandat 477.028 kb on - strandat 477.028 kb on - strandat 477.041 kb on + strandat 477.041 kb on + strandat 477.049 kb on - strandat 477.050 kb on - strandat 477.080 kb on + strandat 477.117 kb on - strand, within GFF476at 477.120 kb on + strand, within GFF476at 477.122 kb on - strand, within GFF476at 477.127 kb on - strand, within GFF476at 477.127 kb on - strand, within GFF476at 477.132 kb on + strand, within GFF476at 477.132 kb on + strand, within GFF476at 477.132 kb on + strand, within GFF476at 477.132 kb on + strand, within GFF476at 477.133 kb on - strand, within GFF476at 477.133 kb on - strand, within GFF476at 477.137 kb on + strand, within GFF476at 477.137 kb on + strand, within GFF476at 477.140 kb on - strand, within GFF476at 477.140 kb on - strand, within GFF476at 477.140 kb on - strand, within GFF476at 477.140 kb on - strand, within GFF476at 477.140 kb on - strand, within GFF476at 477.142 kb on + strand, within GFF476at 477.147 kb on + strand, within GFF476at 477.155 kb on - strand, within GFF476at 477.177 kb on + strand, within GFF476at 477.191 kb on - strand, within GFF476at 477.218 kb on + strand, within GFF476at 477.218 kb on + strand, within GFF476at 477.218 kb on + strand, within GFF476at 477.218 kb on + strand, within GFF476at 477.218 kb on + strand, within GFF476at 477.218 kb on + strand, within GFF476at 477.218 kb on + strand, within GFF476at 477.218 kb on + strand, within GFF476at 477.218 kb on + strand, within GFF476at 477.218 kb on + strand, within GFF476at 477.218 kb on + strand, within GFF476at 477.218 kb on + strand, within GFF476at 477.218 kb on + strand, within GFF476at 477.218 kb on + strand, within GFF476at 477.218 kb on + strand, within GFF476at 477.218 kb on + strand, within GFF476at 477.218 kb on + strand, within GFF476at 477.218 kb on + strand, within GFF476at 477.218 kb on + strand, within GFF476at 477.218 kb on + strand, within GFF476at 477.226 kb on - strand, within GFF476at 477.226 kb on - strand, within GFF476at 477.226 kb on - strand, within GFF476at 477.226 kb on - strand, within GFF476at 477.226 kb on - strand, within GFF476at 477.226 kb on - strand, within GFF476at 477.226 kb on - strand, within GFF476at 477.226 kb on - strand, within GFF476at 477.226 kb on - strand, within GFF476at 477.226 kb on - strand, within GFF476at 477.226 kb on - strand, within GFF476at 477.226 kb on - strand, within GFF476at 477.226 kb on - strand, within GFF476at 477.226 kb on - strand, within GFF476at 477.226 kb on - strand, within GFF476at 477.226 kb on - strand, within GFF476at 477.226 kb on - strand, within GFF476at 477.226 kb on - strand, within GFF476at 477.258 kb on + strand, within GFF476at 477.263 kb on + strand, within GFF476at 477.266 kb on - strand, within GFF476at 477.268 kb on + strand, within GFF476at 477.270 kb on + strand, within GFF476at 477.278 kb on - strand, within GFF476at 477.291 kb on - strand, within GFF476at 477.316 kb on + strand, within GFF476at 477.342 kb on + strand, within GFF476at 477.372 kb on + strand, within GFF476at 477.372 kb on + strand, within GFF476at 477.372 kb on + strand, within GFF476at 477.372 kb on + strand, within GFF476at 477.374 kb on + strand, within GFF476at 477.382 kb on - strand, within GFF476at 477.382 kb on - strand, within GFF476at 477.384 kb on - strand, within GFF476at 477.389 kb on + strand, within GFF476at 477.399 kb on - strand, within GFF476at 477.413 kb on - strand, within GFF476at 477.445 kb on + strand, within GFF476at 477.445 kb on + strand, within GFF476at 477.445 kb on + strand, within GFF476at 477.453 kb on - strand, within GFF476at 477.453 kb on - strand, within GFF476at 477.463 kb on - strand, within GFF476at 477.478 kb on - strand, within GFF476at 477.484 kb on + strand, within GFF476at 477.485 kb on + strand, within GFF476at 477.495 kb on + strand, within GFF476at 477.495 kb on + strand, within GFF476at 477.514 kb on + strand, within GFF476at 477.524 kb on + strand, within GFF476at 477.532 kb on + strand, within GFF476at 477.532 kb on + strand, within GFF476at 477.532 kb on + strand, within GFF476at 477.532 kb on - strand, within GFF476at 477.559 kb on + strand, within GFF476at 477.559 kb on - strand, within GFF476at 477.567 kb on - strand, within GFF476at 477.572 kb on - strand, within GFF476at 477.589 kb on + strand, within GFF476at 477.590 kb on + strand, within GFF476at 477.621 kb on + strandat 477.629 kb on + strandat 477.645 kb on + strandat 477.652 kb on + strandat 477.652 kb on - strandat 477.653 kb on - strandat 477.672 kb on - strandat 477.696 kb on - strandat 477.703 kb on - strandat 477.748 kb on + strandat 477.748 kb on + strandat 477.748 kb on - strandat 477.756 kb on - strandat 477.758 kb on + strandat 477.766 kb on - strandat 477.784 kb on + strandat 477.784 kb on + strandat 477.784 kb on + strandat 480.393 kb on - strandat 480.393 kb on - strandat 480.423 kb on + strandat 480.423 kb on + strandat 480.456 kb on + strandat 480.456 kb on - strandat 480.461 kb on + strandat 480.465 kb on + strandat 480.473 kb on - strandat 480.484 kb on + strandat 480.484 kb on + strandat 480.512 kb on + strandat 480.520 kb on - strandat 480.522 kb on + strandat 480.523 kb on - strandat 480.530 kb on - strandat 480.539 kb on + strandat 480.581 kb on - strandat 480.591 kb on + strandat 480.592 kb on + strandat 480.599 kb on - strandat 480.600 kb on - strandat 480.600 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
remove
476,791 + GFF475 0.49 -0.4
476,801 + GFF475 0.51 -0.9
476,805 - GFF475 0.52 -1.5
476,885 + GFF475 0.69 -1.5
476,885 + GFF475 0.69 -1.8
476,903 + GFF475 0.73 -0.4
476,911 - GFF475 0.75 +0.9
476,929 - GFF475 0.79 -1.2
476,941 + GFF475 0.82 -0.5
476,941 + GFF475 0.82 +0.2
476,941 + GFF475 0.82 +0.5
476,941 + GFF475 0.82 +0.7
476,949 - GFF475 0.83 -1.4
476,949 - GFF475 0.83 -1.5
476,949 - GFF475 0.83 -1.4
476,949 - GFF475 0.83 -0.5
476,965 - GFF475 0.87 -0.4
476,974 - GFF475 0.89 -1.1
476,986 - +0.8
477,003 + -0.4
477,011 - +0.1
477,015 + -0.6
477,015 + +0.2
477,023 - -0.1
477,028 - +0.7
477,028 - +0.6
477,028 - -0.9
477,041 + -1.2
477,041 + +0.6
477,049 - +0.4
477,050 - -0.4
477,080 + -0.4
477,117 - GFF476 0.13 -0.3
477,120 + GFF476 0.13 +0.8
477,122 - GFF476 0.14 +0.5
477,127 - GFF476 0.15 -1.1
477,127 - GFF476 0.15 +0.6
477,132 + GFF476 0.15 +0.0
477,132 + GFF476 0.15 -0.4
477,132 + GFF476 0.15 -0.0
477,132 + GFF476 0.15 -0.2
477,133 - GFF476 0.15 -1.3
477,133 - GFF476 0.15 -0.0
477,137 + GFF476 0.16 +0.0
477,137 + GFF476 0.16 +0.1
477,140 - GFF476 0.17 -1.2
477,140 - GFF476 0.17 +0.8
477,140 - GFF476 0.17 +0.7
477,140 - GFF476 0.17 -1.1
477,140 - GFF476 0.17 +0.4
477,142 + GFF476 0.17 +1.0
477,147 + GFF476 0.18 +0.5
477,155 - GFF476 0.19 +0.1
477,177 + GFF476 0.22 +0.5
477,191 - GFF476 0.25 -1.2
477,218 + GFF476 0.29 +1.1
477,218 + GFF476 0.29 -1.0
477,218 + GFF476 0.29 +0.2
477,218 + GFF476 0.29 -1.0
477,218 + GFF476 0.29 -0.0
477,218 + GFF476 0.29 -0.5
477,218 + GFF476 0.29 -0.8
477,218 + GFF476 0.29 -0.7
477,218 + GFF476 0.29 -0.4
477,218 + GFF476 0.29 -0.8
477,218 + GFF476 0.29 -2.6
477,218 + GFF476 0.29 +0.0
477,218 + GFF476 0.29 -2.2
477,218 + GFF476 0.29 +0.7
477,218 + GFF476 0.29 +0.2
477,218 + GFF476 0.29 +0.6
477,218 + GFF476 0.29 -1.8
477,218 + GFF476 0.29 -0.5
477,218 + GFF476 0.29 -1.3
477,218 + GFF476 0.29 +0.7
477,226 - GFF476 0.30 -2.4
477,226 - GFF476 0.30 +0.4
477,226 - GFF476 0.30 -0.7
477,226 - GFF476 0.30 -1.0
477,226 - GFF476 0.30 -0.4
477,226 - GFF476 0.30 -0.0
477,226 - GFF476 0.30 +0.1
477,226 - GFF476 0.30 -0.5
477,226 - GFF476 0.30 -0.6
477,226 - GFF476 0.30 -0.9
477,226 - GFF476 0.30 +0.1
477,226 - GFF476 0.30 -0.3
477,226 - GFF476 0.30 -1.1
477,226 - GFF476 0.30 -0.0
477,226 - GFF476 0.30 -0.1
477,226 - GFF476 0.30 +0.8
477,226 - GFF476 0.30 +0.5
477,226 - GFF476 0.30 -1.1
477,258 + GFF476 0.35 -0.8
477,263 + GFF476 0.36 -1.0
477,266 - GFF476 0.37 -1.5
477,268 + GFF476 0.37 +1.2
477,270 + GFF476 0.37 +0.5
477,278 - GFF476 0.39 -0.3
477,291 - GFF476 0.41 +0.7
477,316 + GFF476 0.45 -0.7
477,342 + GFF476 0.49 -0.7
477,372 + GFF476 0.54 +0.1
477,372 + GFF476 0.54 -1.4
477,372 + GFF476 0.54 -0.3
477,372 + GFF476 0.54 +0.5
477,374 + GFF476 0.54 -1.1
477,382 - GFF476 0.55 +0.3
477,382 - GFF476 0.55 -1.2
477,384 - GFF476 0.56 +0.2
477,389 + GFF476 0.56 -1.4
477,399 - GFF476 0.58 +0.1
477,413 - GFF476 0.60 -0.8
477,445 + GFF476 0.65 +0.6
477,445 + GFF476 0.65 +1.5
477,445 + GFF476 0.65 +0.2
477,453 - GFF476 0.67 +0.5
477,453 - GFF476 0.67 -1.2
477,463 - GFF476 0.68 +0.6
477,478 - GFF476 0.70 -1.5
477,484 + GFF476 0.71 -0.3
477,485 + GFF476 0.72 -0.7
477,495 + GFF476 0.73 +0.1
477,495 + GFF476 0.73 -0.5
477,514 + GFF476 0.76 -2.1
477,524 + GFF476 0.78 -1.2
477,532 + GFF476 0.79 -2.0
477,532 + GFF476 0.79 +0.7
477,532 + GFF476 0.79 +0.6
477,532 - GFF476 0.79 +0.2
477,559 + GFF476 0.83 -0.6
477,559 - GFF476 0.83 +1.5
477,567 - GFF476 0.85 -0.1
477,572 - GFF476 0.85 +0.8
477,589 + GFF476 0.88 +0.1
477,590 + GFF476 0.88 -0.3
477,621 + +1.1
477,629 + -0.1
477,645 + -0.2
477,652 + +0.6
477,652 - -1.3
477,653 - +0.5
477,672 - -0.4
477,696 - +0.2
477,703 - -0.0
477,748 + -1.3
477,748 + -0.2
477,748 - -0.9
477,756 - -1.6
477,758 + -0.5
477,766 - -0.4
477,784 + +1.0
477,784 + -0.6
477,784 + +0.4
480,393 - +0.1
480,393 - +0.5
480,423 + -1.7
480,423 + -2.3
480,456 + +0.2
480,456 - -1.6
480,461 + +0.7
480,465 + -1.5
480,473 - -0.1
480,484 + +0.5
480,484 + -1.5
480,512 + -2.0
480,520 - -0.7
480,522 + -0.2
480,523 - +0.4
480,530 - -2.1
480,539 + -0.4
480,581 - +0.9
480,591 + +0.6
480,592 + -0.2
480,599 - +0.9
480,600 - +0.4
480,600 - +2.2

Or see this region's nucleotide sequence