Strain Fitness in Sphingobium sp. HT1-2 around GFF4767

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,762,564	+				-3.1
4,762,577	-				-0.7
4,762,620	-		GFF4765	0.14	-1.4
4,762,622	+		GFF4765	0.14	-0.1
4,762,630	-		GFF4765	0.15	+0.5
4,762,655	+		GFF4765	0.19	-0.8
4,762,655	+		GFF4765	0.19	-2.8
4,762,655	+		GFF4765	0.19	-1.8
4,762,655	+		GFF4765	0.19	+0.1
4,762,655	-		GFF4765	0.19	-0.6
4,762,657	+		GFF4765	0.20	-0.1
4,762,663	-		GFF4765	0.21	-1.8
4,762,663	-		GFF4765	0.21	-3.1
4,762,663	-		GFF4765	0.21	-2.7
4,762,663	-		GFF4765	0.21	-2.1
4,762,665	+		GFF4765	0.21	-1.1
4,762,665	+		GFF4765	0.21	+0.5
4,762,673	-		GFF4765	0.22	-2.2
4,762,684	+		GFF4765	0.24	-0.6
4,762,722	+		GFF4765	0.30	-1.1
4,762,726	+		GFF4765	0.30	-1.5
4,762,727	+		GFF4765	0.31	-1.2
4,762,727	+		GFF4765	0.31	+0.2
4,762,727	+		GFF4765	0.31	+1.0
4,762,727	+		GFF4765	0.31	+0.3
4,762,727	+		GFF4765	0.31	-0.7
4,762,727	+		GFF4765	0.31	-1.5
4,762,727	+		GFF4765	0.31	-0.0
4,762,727	+		GFF4765	0.31	-2.7
4,762,727	+		GFF4765	0.31	-1.4
4,762,727	+		GFF4765	0.31	+0.8
4,762,735	-		GFF4765	0.32	-1.6
4,762,735	-		GFF4765	0.32	-0.5
4,762,735	-		GFF4765	0.32	-2.0
4,762,735	-		GFF4765	0.32	-2.5
4,762,735	-		GFF4765	0.32	-2.9
4,762,735	-		GFF4765	0.32	-0.6
4,762,810	-		GFF4765	0.43	-0.0
4,762,874	+		GFF4765	0.53	-1.5
4,762,882	-		GFF4765	0.55	+0.4
4,762,901	-		GFF4765	0.58	-2.7
4,762,928	+		GFF4765	0.62	-0.2
4,762,928	+		GFF4765	0.62	-1.3
4,762,957	+		GFF4765	0.66	-1.1
4,762,966	-		GFF4765	0.68	-0.8
4,762,973	+		GFF4765	0.69	-0.4
4,762,978	+		GFF4765	0.70	-1.1
4,762,978	+		GFF4765	0.70	-0.6
4,762,978	+		GFF4765	0.70	-2.1
4,762,978	+		GFF4765	0.70	-1.8
4,762,978	+		GFF4765	0.70	+0.0
4,762,986	-		GFF4765	0.71	-1.3
4,762,987	-		GFF4765	0.71	-0.7
4,763,017	+		GFF4765	0.76	-1.4
4,763,017	+		GFF4765	0.76	-1.7
4,763,017	+		GFF4765	0.76	+0.3
4,763,025	-		GFF4765	0.77	-0.8
4,763,037	+		GFF4765	0.79	-2.0
4,763,081	-		GFF4765	0.86	+0.4
4,763,099	-		GFF4765	0.88	-1.0
4,763,107	+		GFF4765	0.90	-3.5
4,763,115	-				-2.1
4,763,118	-				-0.0
4,763,134	-				-0.6
4,763,139	-				-1.2
4,763,140	+				-2.6
4,763,140	+				-0.8
4,763,140	+				-0.2
4,763,140	+				-0.0
4,763,148	-				-0.8
4,763,190	+				+0.2
4,763,193	-				-1.2
4,763,219	+		GFF4766	0.14	-0.3
4,763,224	+		GFF4766	0.15	+0.5
4,763,224	+		GFF4766	0.15	-1.4
4,763,224	+		GFF4766	0.15	-0.4
4,763,227	-		GFF4766	0.16	-1.7
4,763,227	-		GFF4766	0.16	-0.9
4,763,231	+		GFF4766	0.17	-1.9
4,763,232	-		GFF4766	0.17	+1.3
4,763,259	+		GFF4766	0.25	-1.9
4,763,295	-		GFF4766	0.35	-0.5
4,763,300	+		GFF4766	0.36	-0.3
4,763,330	+		GFF4766	0.44	-1.1
4,763,330	+		GFF4766	0.44	-1.3
4,763,330	+		GFF4766	0.44	+0.7
4,763,330	+		GFF4766	0.44	-1.8
4,763,330	+		GFF4766	0.44	-0.7
4,763,330	+		GFF4766	0.44	-1.7
4,763,330	+		GFF4766	0.44	+0.1
4,763,330	+		GFF4766	0.44	+1.6
4,763,338	+		GFF4766	0.47	-1.8
4,763,338	-		GFF4766	0.47	-1.8
4,763,353	+		GFF4766	0.51	-0.7
4,763,360	-		GFF4766	0.53	-0.2
4,763,365	+		GFF4766	0.54	-0.8
4,763,420	+		GFF4766	0.69	-2.1
4,763,424	-		GFF4766	0.70	+0.6
4,763,428	-		GFF4766	0.71	-1.5
4,763,433	-		GFF4766	0.73	+0.2
4,763,433	-		GFF4766	0.73	-1.0
4,763,447	+		GFF4766	0.77	-1.2
4,763,474	+		GFF4766	0.84	-1.2
4,763,482	-		GFF4766	0.86	+0.4
4,763,515	+				-2.3
4,763,525	+				+0.0
4,763,533	-				-1.2
4,763,533	-				-0.6
4,763,541	-				+0.3
4,763,570	+				-0.6
4,763,591	-				-0.1
4,763,623	+				-1.1
4,763,623	+				+0.8
4,763,664	+		GFF4767	0.12	-0.8
4,763,672	-		GFF4767	0.13	-0.2
4,763,688	+		GFF4767	0.15	-1.8
4,763,688	+		GFF4767	0.15	-0.5
4,763,688	+		GFF4767	0.15	-1.0
4,763,688	+		GFF4767	0.15	-0.5
4,763,688	+		GFF4767	0.15	+0.7
4,763,688	+		GFF4767	0.15	+0.8
4,763,693	+		GFF4767	0.16	-1.7
4,763,696	-		GFF4767	0.16	-2.6
4,763,719	+		GFF4767	0.19	-0.3
4,763,730	+		GFF4767	0.20	-1.5
4,763,732	-		GFF4767	0.20	-0.8
4,763,738	+		GFF4767	0.21	-0.5
4,763,738	-		GFF4767	0.21	-0.2
4,763,746	-		GFF4767	0.22	-1.5
4,763,752	+		GFF4767	0.23	-1.3
4,763,779	+		GFF4767	0.26	-1.2
4,763,779	+		GFF4767	0.26	-1.0
4,763,779	+		GFF4767	0.26	-1.2
4,763,791	+		GFF4767	0.27	-1.3
4,763,812	+		GFF4767	0.30	-0.4
4,763,839	+		GFF4767	0.33	-1.3
4,763,849	+		GFF4767	0.34	-0.1
4,763,849	+		GFF4767	0.34	-1.8
4,763,854	+		GFF4767	0.35	-2.3
4,763,857	-		GFF4767	0.35	-1.4
4,763,857	-		GFF4767	0.35	-0.7
4,763,864	+		GFF4767	0.36	-1.8
4,763,864	+		GFF4767	0.36	-1.0
4,763,868	+		GFF4767	0.37	-1.8
4,763,872	-		GFF4767	0.37	-1.3
4,763,874	-		GFF4767	0.37	-1.7
4,763,876	+		GFF4767	0.38	-0.7
4,763,876	+		GFF4767	0.38	-1.2
4,763,881	+		GFF4767	0.38	-0.7
4,763,881	+		GFF4767	0.38	-1.6
4,763,884	-		GFF4767	0.39	-2.1
4,763,884	-		GFF4767	0.39	-2.6
4,763,886	-		GFF4767	0.39	-1.1
4,763,888	+		GFF4767	0.39	-1.8
4,763,888	+		GFF4767	0.39	-2.9
4,763,889	-		GFF4767	0.39	-1.6
4,763,889	-		GFF4767	0.39	-2.2
4,763,889	-		GFF4767	0.39	-1.2
4,763,892	+		GFF4767	0.40	-1.9
4,763,900	-		GFF4767	0.41	-0.4
4,763,901	-		GFF4767	0.41	-3.1
4,763,901	-		GFF4767	0.41	-0.5
4,763,912	+		GFF4767	0.42	-1.1
4,763,912	+		GFF4767	0.42	-3.1
4,763,912	+		GFF4767	0.42	-0.0
4,763,916	+		GFF4767	0.42	-0.6
4,763,916	+		GFF4767	0.42	-1.7
4,763,920	-		GFF4767	0.43	-0.4
4,763,920	-		GFF4767	0.43	-1.7
4,763,938	+		GFF4767	0.45	-1.0
4,763,938	+		GFF4767	0.45	-1.6
4,763,946	-		GFF4767	0.46	-2.1
4,763,949	+		GFF4767	0.46	+0.4
4,763,959	+		GFF4767	0.48	+0.2
4,763,959	+		GFF4767	0.48	-1.7
4,763,967	-		GFF4767	0.49	-0.6
4,763,972	+		GFF4767	0.49	+0.4
4,763,985	-		GFF4767	0.51	-0.2
4,763,986	-		GFF4767	0.51	-1.1
4,763,986	-		GFF4767	0.51	-1.3
4,763,988	+		GFF4767	0.51	-3.0
4,764,022	+		GFF4767	0.55	-0.2
4,764,023	-		GFF4767	0.55	-2.0
4,764,046	-		GFF4767	0.58	-1.5
4,764,080	+		GFF4767	0.62	-1.0
4,764,103	+		GFF4767	0.65	-2.0
4,764,108	-		GFF4767	0.66	-0.2
4,764,124	-		GFF4767	0.68	-1.9
4,764,126	+		GFF4767	0.68	-1.7
4,764,135	-		GFF4767	0.69	-3.1
4,764,139	+		GFF4767	0.69	-0.2
4,764,139	+		GFF4767	0.69	-0.6
4,764,149	+		GFF4767	0.71	-1.0
4,764,157	-		GFF4767	0.71	+1.1
4,764,216	-		GFF4767	0.79	-0.2
4,764,220	+		GFF4767	0.79	-1.6
4,764,220	+		GFF4767	0.79	-0.7
4,764,225	-		GFF4767	0.80	-1.6
4,764,228	-		GFF4767	0.80	-1.8
4,764,250	+		GFF4767	0.83	-1.6
4,764,258	-		GFF4767	0.84	-1.5
4,764,258	-		GFF4767	0.84	-1.1
4,764,287	+		GFF4767	0.87	+0.6
4,764,290	-		GFF4767	0.87	-0.7
4,764,369	-				-0.7
4,764,398	+				-2.4
4,764,398	-				-0.9
4,764,471	-				-0.4
4,764,474	-				-0.1
4,764,474	-				-2.4
4,764,475	+				-0.6
4,764,483	-				-3.7
4,764,483	-				-1.3
4,764,483	-				+0.1
4,764,483	-				-0.8
4,764,483	-				-1.3
4,764,483	-				-0.9
4,764,483	-				-0.4
4,764,483	-				-0.9
4,764,483	-				-2.1
4,764,485	+				-1.3
4,764,485	+				-0.9
4,764,493	-				-0.8
4,764,519	+		GFF4768	0.14	-3.5
4,764,535	-		GFF4768	0.17	+0.2
4,764,536	+		GFF4768	0.17	+0.5
4,764,538	+		GFF4768	0.17	+0.4
4,764,546	-		GFF4768	0.19	-0.8
4,764,546	-		GFF4768	0.19	-3.0
4,764,563	+		GFF4768	0.22	-0.7
4,764,566	-		GFF4768	0.22	-0.1
4,764,573	+		GFF4768	0.23	-0.8
4,764,581	-		GFF4768	0.25	-2.7
4,764,595	-		GFF4768	0.27	-1.6
4,764,598	-		GFF4768	0.28	-2.7
4,764,612	-		GFF4768	0.30	-0.8
4,764,612	-		GFF4768	0.30	-1.6
4,764,612	-		GFF4768	0.30	+0.7
4,764,633	-		GFF4768	0.34	-1.9
4,764,649	-		GFF4768	0.37	-1.3
4,764,649	-		GFF4768	0.37	-1.5
4,764,655	-		GFF4768	0.38	-1.6
4,764,751	+		GFF4768	0.54	+1.0
4,764,759	-		GFF4768	0.56	+1.9
4,764,759	-		GFF4768	0.56	-1.7
4,764,765	+		GFF4768	0.57	-1.6
4,764,769	-		GFF4768	0.57	-0.1
4,764,774	+		GFF4768	0.58	-2.3
4,764,774	+		GFF4768	0.58	-0.2
4,764,774	+		GFF4768	0.58	-2.1
4,764,798	+		GFF4768	0.62	-0.3
4,764,824	+		GFF4768	0.67	-2.3
4,764,830	+		GFF4768	0.68	-2.7
4,764,838	-		GFF4768	0.69	-0.7
4,764,854	+		GFF4768	0.72	+1.5
4,764,854	+		GFF4768	0.72	-1.4
4,764,895	-		GFF4768	0.79	+0.9
4,764,897	+		GFF4768	0.80	-0.6
4,764,920	+		GFF4768	0.84	-0.6
4,764,977	-				-1.7
4,764,996	-				-0.5
4,764,998	-				-1.0
4,765,001	+				-3.0
4,765,005	-				-2.2
4,765,037	-		GFF4769	0.17	-0.2
4,765,058	+		GFF4769	0.33	-1.0
4,765,097	-		GFF4769	0.61	+0.4
4,765,127	-		GFF4769	0.83	-1.0
4,765,130	+		GFF4769	0.85	-1.3
4,765,138	+				-0.0
4,765,138	-				-0.7
4,765,138	-				-2.3
4,765,181	-				-1.3
4,765,181	-				+0.6