Strain Fitness in Sphingobium sp. HT1-2 around GFF4751

Experiment: EMM_noCarbon with Sucrose and Putrescine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4750 and GFF4751 are separated by 14 nucleotidesGFF4751 and GFF4752 are separated by 81 nucleotidesGFF4752 and GFF4753 are separated by 59 nucleotidesGFF4753 and GFF4754 are separated by 166 nucleotides GFF4750 - aromatic hydrocarbon degradation membrane protein, at 4,749,752 to 4,751,053 GFF4750 GFF4751 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 4,751,068 to 4,752,729 GFF4751 GFF4752 - Transcriptional regulator, MerR family, at 4,752,811 to 4,753,281 GFF4752 GFF4753 - Resolvase, N-terminal domain, at 4,753,341 to 4,753,517 GFF4753 GFF4754 - Mobile element protein, at 4,753,684 to 4,753,965 GFF4754 Position (kb) 4751 4752 4753Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4750.071 kb on + strand, within GFF4750at 4750.079 kb on - strand, within GFF4750at 4750.079 kb on - strand, within GFF4750at 4750.079 kb on - strand, within GFF4750at 4750.079 kb on - strand, within GFF4750at 4750.094 kb on + strand, within GFF4750at 4750.094 kb on + strand, within GFF4750at 4750.102 kb on - strand, within GFF4750at 4750.140 kb on + strand, within GFF4750at 4750.163 kb on + strand, within GFF4750at 4750.171 kb on - strand, within GFF4750at 4750.195 kb on + strand, within GFF4750at 4750.197 kb on + strand, within GFF4750at 4750.205 kb on + strand, within GFF4750at 4750.207 kb on + strand, within GFF4750at 4750.207 kb on + strand, within GFF4750at 4750.207 kb on + strand, within GFF4750at 4750.207 kb on + strand, within GFF4750at 4750.215 kb on - strand, within GFF4750at 4750.215 kb on - strand, within GFF4750at 4750.215 kb on - strand, within GFF4750at 4750.215 kb on - strand, within GFF4750at 4750.215 kb on - strand, within GFF4750at 4750.285 kb on - strand, within GFF4750at 4750.368 kb on + strand, within GFF4750at 4750.397 kb on + strand, within GFF4750at 4750.400 kb on - strand, within GFF4750at 4750.405 kb on - strand, within GFF4750at 4750.463 kb on - strand, within GFF4750at 4750.526 kb on + strand, within GFF4750at 4750.601 kb on + strand, within GFF4750at 4750.605 kb on + strand, within GFF4750at 4750.606 kb on + strand, within GFF4750at 4750.611 kb on + strand, within GFF4750at 4750.619 kb on - strand, within GFF4750at 4750.636 kb on - strand, within GFF4750at 4750.637 kb on + strand, within GFF4750at 4750.664 kb on + strand, within GFF4750at 4750.672 kb on - strand, within GFF4750at 4750.672 kb on - strand, within GFF4750at 4750.715 kb on + strand, within GFF4750at 4750.715 kb on + strand, within GFF4750at 4750.751 kb on + strand, within GFF4750at 4750.752 kb on + strand, within GFF4750at 4750.752 kb on + strand, within GFF4750at 4750.756 kb on + strand, within GFF4750at 4750.756 kb on + strand, within GFF4750at 4750.756 kb on + strand, within GFF4750at 4750.756 kb on + strand, within GFF4750at 4750.756 kb on + strand, within GFF4750at 4750.756 kb on + strand, within GFF4750at 4750.756 kb on + strand, within GFF4750at 4750.757 kb on + strand, within GFF4750at 4750.764 kb on - strand, within GFF4750at 4750.766 kb on + strand, within GFF4750at 4750.786 kb on + strand, within GFF4750at 4750.821 kb on + strand, within GFF4750at 4750.826 kb on + strand, within GFF4750at 4750.898 kb on - strand, within GFF4750at 4750.915 kb on - strand, within GFF4750at 4750.960 kb on - strandat 4751.024 kb on - strandat 4751.111 kb on + strandat 4751.135 kb on - strandat 4751.160 kb on + strandat 4751.160 kb on + strandat 4751.168 kb on - strandat 4751.168 kb on - strandat 4751.168 kb on - strandat 4751.168 kb on - strandat 4751.168 kb on - strandat 4751.199 kb on + strandat 4751.199 kb on + strandat 4751.207 kb on + strandat 4751.207 kb on - strandat 4751.207 kb on - strandat 4751.221 kb on + strandat 4751.227 kb on + strandat 4751.235 kb on + strand, within GFF4751at 4751.258 kb on + strand, within GFF4751at 4751.268 kb on + strand, within GFF4751at 4751.268 kb on + strand, within GFF4751at 4751.268 kb on + strand, within GFF4751at 4751.268 kb on + strand, within GFF4751at 4751.268 kb on + strand, within GFF4751at 4751.268 kb on + strand, within GFF4751at 4751.268 kb on + strand, within GFF4751at 4751.276 kb on - strand, within GFF4751at 4751.276 kb on - strand, within GFF4751at 4751.276 kb on - strand, within GFF4751at 4751.276 kb on - strand, within GFF4751at 4751.287 kb on + strand, within GFF4751at 4751.288 kb on + strand, within GFF4751at 4751.295 kb on - strand, within GFF4751at 4751.296 kb on - strand, within GFF4751at 4751.300 kb on - strand, within GFF4751at 4751.304 kb on - strand, within GFF4751at 4751.333 kb on - strand, within GFF4751at 4751.353 kb on + strand, within GFF4751at 4751.371 kb on - strand, within GFF4751at 4751.373 kb on + strand, within GFF4751at 4751.373 kb on + strand, within GFF4751at 4751.381 kb on - strand, within GFF4751at 4751.381 kb on - strand, within GFF4751at 4751.381 kb on - strand, within GFF4751at 4751.442 kb on - strand, within GFF4751at 4751.444 kb on - strand, within GFF4751at 4751.472 kb on - strand, within GFF4751at 4751.493 kb on + strand, within GFF4751at 4751.493 kb on + strand, within GFF4751at 4751.501 kb on - strand, within GFF4751at 4751.501 kb on - strand, within GFF4751at 4751.501 kb on - strand, within GFF4751at 4751.501 kb on - strand, within GFF4751at 4751.527 kb on - strand, within GFF4751at 4751.532 kb on - strand, within GFF4751at 4751.532 kb on - strand, within GFF4751at 4751.532 kb on - strand, within GFF4751at 4751.542 kb on + strand, within GFF4751at 4751.542 kb on + strand, within GFF4751at 4751.550 kb on - strand, within GFF4751at 4751.557 kb on - strand, within GFF4751at 4751.658 kb on - strand, within GFF4751at 4751.663 kb on - strand, within GFF4751at 4751.695 kb on + strand, within GFF4751at 4751.709 kb on + strand, within GFF4751at 4751.710 kb on + strand, within GFF4751at 4751.717 kb on + strand, within GFF4751at 4751.717 kb on + strand, within GFF4751at 4751.722 kb on + strand, within GFF4751at 4751.722 kb on + strand, within GFF4751at 4751.722 kb on + strand, within GFF4751at 4751.779 kb on + strand, within GFF4751at 4751.780 kb on + strand, within GFF4751at 4751.791 kb on + strand, within GFF4751at 4751.793 kb on + strand, within GFF4751at 4751.799 kb on - strand, within GFF4751at 4751.804 kb on - strand, within GFF4751at 4751.804 kb on - strand, within GFF4751at 4751.856 kb on - strand, within GFF4751at 4751.957 kb on - strand, within GFF4751at 4751.957 kb on - strand, within GFF4751at 4751.967 kb on + strand, within GFF4751at 4751.972 kb on + strand, within GFF4751at 4751.972 kb on + strand, within GFF4751at 4752.109 kb on + strand, within GFF4751at 4752.110 kb on + strand, within GFF4751at 4752.110 kb on + strand, within GFF4751at 4752.110 kb on + strand, within GFF4751at 4752.110 kb on + strand, within GFF4751at 4752.110 kb on + strand, within GFF4751at 4752.118 kb on - strand, within GFF4751at 4752.118 kb on - strand, within GFF4751at 4752.118 kb on - strand, within GFF4751at 4752.120 kb on + strand, within GFF4751at 4752.166 kb on + strand, within GFF4751at 4752.193 kb on - strand, within GFF4751at 4752.299 kb on + strand, within GFF4751at 4752.316 kb on + strand, within GFF4751at 4752.316 kb on + strand, within GFF4751at 4752.321 kb on + strand, within GFF4751at 4752.329 kb on - strand, within GFF4751at 4752.381 kb on + strand, within GFF4751at 4752.386 kb on + strand, within GFF4751at 4752.484 kb on + strand, within GFF4751at 4752.485 kb on - strand, within GFF4751at 4752.522 kb on + strand, within GFF4751at 4752.536 kb on + strand, within GFF4751at 4752.546 kb on + strand, within GFF4751at 4752.558 kb on + strand, within GFF4751at 4752.566 kb on - strandat 4752.630 kb on + strandat 4752.631 kb on + strandat 4752.631 kb on + strandat 4752.638 kb on - strandat 4752.638 kb on - strandat 4752.639 kb on - strandat 4752.639 kb on - strandat 4752.646 kb on + strandat 4752.668 kb on - strandat 4752.680 kb on - strandat 4752.731 kb on + strandat 4752.755 kb on + strandat 4752.788 kb on + strandat 4752.849 kb on + strandat 4752.849 kb on + strandat 4752.862 kb on + strand, within GFF4752at 4752.888 kb on - strand, within GFF4752at 4752.976 kb on - strand, within GFF4752at 4752.999 kb on - strand, within GFF4752at 4753.026 kb on + strand, within GFF4752at 4753.057 kb on - strand, within GFF4752at 4753.122 kb on + strand, within GFF4752at 4753.139 kb on + strand, within GFF4752at 4753.244 kb on - strandat 4753.263 kb on + strandat 4753.305 kb on - strandat 4753.322 kb on - strandat 4753.384 kb on + strand, within GFF4753at 4753.384 kb on + strand, within GFF4753at 4753.384 kb on + strand, within GFF4753at 4753.411 kb on - strand, within GFF4753at 4753.583 kb on + strandat 4753.619 kb on + strandat 4753.626 kb on + strandat 4753.685 kb on + strandat 4753.687 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
remove
4,750,071 + GFF4750 0.25 -1.2
4,750,079 - GFF4750 0.25 -1.1
4,750,079 - GFF4750 0.25 +1.6
4,750,079 - GFF4750 0.25 +0.6
4,750,079 - GFF4750 0.25 +1.5
4,750,094 + GFF4750 0.26 +0.2
4,750,094 + GFF4750 0.26 +1.1
4,750,102 - GFF4750 0.27 +0.3
4,750,140 + GFF4750 0.30 -0.4
4,750,163 + GFF4750 0.32 -0.7
4,750,171 - GFF4750 0.32 +0.2
4,750,195 + GFF4750 0.34 -0.0
4,750,197 + GFF4750 0.34 +0.4
4,750,205 + GFF4750 0.35 +0.6
4,750,207 + GFF4750 0.35 -2.3
4,750,207 + GFF4750 0.35 +0.2
4,750,207 + GFF4750 0.35 -1.6
4,750,207 + GFF4750 0.35 -0.7
4,750,215 - GFF4750 0.36 +0.0
4,750,215 - GFF4750 0.36 +0.1
4,750,215 - GFF4750 0.36 -0.8
4,750,215 - GFF4750 0.36 +0.8
4,750,215 - GFF4750 0.36 -0.1
4,750,285 - GFF4750 0.41 +0.8
4,750,368 + GFF4750 0.47 +1.2
4,750,397 + GFF4750 0.50 +1.2
4,750,400 - GFF4750 0.50 -0.6
4,750,405 - GFF4750 0.50 +0.6
4,750,463 - GFF4750 0.55 -0.4
4,750,526 + GFF4750 0.59 +1.7
4,750,601 + GFF4750 0.65 +0.7
4,750,605 + GFF4750 0.66 +0.3
4,750,606 + GFF4750 0.66 -1.1
4,750,611 + GFF4750 0.66 +0.4
4,750,619 - GFF4750 0.67 -0.3
4,750,636 - GFF4750 0.68 +0.6
4,750,637 + GFF4750 0.68 -0.6
4,750,664 + GFF4750 0.70 -1.8
4,750,672 - GFF4750 0.71 +0.5
4,750,672 - GFF4750 0.71 -0.6
4,750,715 + GFF4750 0.74 -0.6
4,750,715 + GFF4750 0.74 +0.6
4,750,751 + GFF4750 0.77 -0.2
4,750,752 + GFF4750 0.77 +1.1
4,750,752 + GFF4750 0.77 -1.4
4,750,756 + GFF4750 0.77 -0.2
4,750,756 + GFF4750 0.77 -0.7
4,750,756 + GFF4750 0.77 +0.2
4,750,756 + GFF4750 0.77 -0.4
4,750,756 + GFF4750 0.77 +0.6
4,750,756 + GFF4750 0.77 +1.1
4,750,756 + GFF4750 0.77 +0.7
4,750,757 + GFF4750 0.77 -1.4
4,750,764 - GFF4750 0.78 -1.2
4,750,766 + GFF4750 0.78 +0.1
4,750,786 + GFF4750 0.79 -2.0
4,750,821 + GFF4750 0.82 +0.7
4,750,826 + GFF4750 0.82 +0.0
4,750,898 - GFF4750 0.88 +0.3
4,750,915 - GFF4750 0.89 +0.2
4,750,960 - +1.3
4,751,024 - -0.2
4,751,111 + -1.0
4,751,135 - +1.5
4,751,160 + +1.5
4,751,160 + -0.1
4,751,168 - -0.2
4,751,168 - -1.0
4,751,168 - +1.1
4,751,168 - +0.3
4,751,168 - +0.2
4,751,199 + +1.1
4,751,199 + +0.0
4,751,207 + -0.6
4,751,207 - +0.1
4,751,207 - +0.4
4,751,221 + +0.2
4,751,227 + +1.4
4,751,235 + GFF4751 0.10 -0.8
4,751,258 + GFF4751 0.11 -0.4
4,751,268 + GFF4751 0.12 -0.5
4,751,268 + GFF4751 0.12 -0.3
4,751,268 + GFF4751 0.12 +0.1
4,751,268 + GFF4751 0.12 +0.6
4,751,268 + GFF4751 0.12 -1.2
4,751,268 + GFF4751 0.12 -0.4
4,751,268 + GFF4751 0.12 +0.2
4,751,276 - GFF4751 0.13 +0.5
4,751,276 - GFF4751 0.13 -1.0
4,751,276 - GFF4751 0.13 -0.9
4,751,276 - GFF4751 0.13 -1.0
4,751,287 + GFF4751 0.13 +0.1
4,751,288 + GFF4751 0.13 +0.7
4,751,295 - GFF4751 0.14 +0.5
4,751,296 - GFF4751 0.14 -2.5
4,751,300 - GFF4751 0.14 -0.8
4,751,304 - GFF4751 0.14 +0.9
4,751,333 - GFF4751 0.16 -0.2
4,751,353 + GFF4751 0.17 -0.2
4,751,371 - GFF4751 0.18 +1.2
4,751,373 + GFF4751 0.18 +0.1
4,751,373 + GFF4751 0.18 -0.4
4,751,381 - GFF4751 0.19 -1.0
4,751,381 - GFF4751 0.19 +0.2
4,751,381 - GFF4751 0.19 -1.2
4,751,442 - GFF4751 0.23 +0.5
4,751,444 - GFF4751 0.23 +0.2
4,751,472 - GFF4751 0.24 -0.2
4,751,493 + GFF4751 0.26 -0.2
4,751,493 + GFF4751 0.26 +0.5
4,751,501 - GFF4751 0.26 -1.8
4,751,501 - GFF4751 0.26 -0.1
4,751,501 - GFF4751 0.26 -1.0
4,751,501 - GFF4751 0.26 +0.6
4,751,527 - GFF4751 0.28 +0.3
4,751,532 - GFF4751 0.28 -0.0
4,751,532 - GFF4751 0.28 +0.3
4,751,532 - GFF4751 0.28 +1.1
4,751,542 + GFF4751 0.29 -0.1
4,751,542 + GFF4751 0.29 +0.2
4,751,550 - GFF4751 0.29 +1.4
4,751,557 - GFF4751 0.29 +1.1
4,751,658 - GFF4751 0.35 +0.8
4,751,663 - GFF4751 0.36 +0.8
4,751,695 + GFF4751 0.38 -1.5
4,751,709 + GFF4751 0.39 +0.6
4,751,710 + GFF4751 0.39 +0.7
4,751,717 + GFF4751 0.39 +0.8
4,751,717 + GFF4751 0.39 +0.3
4,751,722 + GFF4751 0.39 +0.3
4,751,722 + GFF4751 0.39 +0.3
4,751,722 + GFF4751 0.39 +0.3
4,751,779 + GFF4751 0.43 -2.6
4,751,780 + GFF4751 0.43 -0.3
4,751,791 + GFF4751 0.44 +0.8
4,751,793 + GFF4751 0.44 -0.5
4,751,799 - GFF4751 0.44 -0.2
4,751,804 - GFF4751 0.44 +2.2
4,751,804 - GFF4751 0.44 +0.7
4,751,856 - GFF4751 0.47 +0.5
4,751,957 - GFF4751 0.53 +0.6
4,751,957 - GFF4751 0.53 +1.8
4,751,967 + GFF4751 0.54 +0.4
4,751,972 + GFF4751 0.54 +0.1
4,751,972 + GFF4751 0.54 -0.3
4,752,109 + GFF4751 0.63 +1.4
4,752,110 + GFF4751 0.63 -0.6
4,752,110 + GFF4751 0.63 -0.0
4,752,110 + GFF4751 0.63 +0.1
4,752,110 + GFF4751 0.63 +0.1
4,752,110 + GFF4751 0.63 -0.2
4,752,118 - GFF4751 0.63 -1.2
4,752,118 - GFF4751 0.63 -0.6
4,752,118 - GFF4751 0.63 -0.1
4,752,120 + GFF4751 0.63 +1.2
4,752,166 + GFF4751 0.66 +0.7
4,752,193 - GFF4751 0.68 -0.0
4,752,299 + GFF4751 0.74 +0.4
4,752,316 + GFF4751 0.75 -0.4
4,752,316 + GFF4751 0.75 +3.1
4,752,321 + GFF4751 0.75 +0.7
4,752,329 - GFF4751 0.76 +0.9
4,752,381 + GFF4751 0.79 -0.0
4,752,386 + GFF4751 0.79 -1.1
4,752,484 + GFF4751 0.85 -0.9
4,752,485 - GFF4751 0.85 -1.1
4,752,522 + GFF4751 0.87 +1.1
4,752,536 + GFF4751 0.88 +0.9
4,752,546 + GFF4751 0.89 +1.1
4,752,558 + GFF4751 0.90 +0.9
4,752,566 - -2.0
4,752,630 + +2.0
4,752,631 + -2.0
4,752,631 + +0.2
4,752,638 - -0.6
4,752,638 - -2.1
4,752,639 - +1.3
4,752,639 - +0.0
4,752,646 + +0.9
4,752,668 - -1.4
4,752,680 - +0.3
4,752,731 + +1.2
4,752,755 + +0.9
4,752,788 + +0.2
4,752,849 + -1.1
4,752,849 + +0.1
4,752,862 + GFF4752 0.11 +0.6
4,752,888 - GFF4752 0.16 -0.9
4,752,976 - GFF4752 0.35 +0.2
4,752,999 - GFF4752 0.40 +1.2
4,753,026 + GFF4752 0.46 -0.9
4,753,057 - GFF4752 0.52 +0.6
4,753,122 + GFF4752 0.66 +1.0
4,753,139 + GFF4752 0.70 -0.2
4,753,244 - -1.7
4,753,263 + -0.4
4,753,305 - +0.2
4,753,322 - -0.3
4,753,384 + GFF4753 0.24 +0.9
4,753,384 + GFF4753 0.24 +0.2
4,753,384 + GFF4753 0.24 +1.4
4,753,411 - GFF4753 0.40 -1.4
4,753,583 + -0.7
4,753,619 + +0.1
4,753,626 + +0.1
4,753,685 + +1.1
4,753,687 + +0.3

Or see this region's nucleotide sequence