Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF472 and GFF473 are separated by 85 nucleotides GFF473 and GFF474 are separated by 177 nucleotides GFF474 and GFF475 overlap by 4 nucleotides
GFF472 - Chaperone protein DnaJ, at 472,761 to 473,918
GFF472
GFF473 - Chaperone protein DnaK, at 474,004 to 475,902
GFF473
GFF474 - Copper metallochaperone PCu(A)C, inserts Cu(I) into cytochrome oxidase subunit II, at 476,080 to 476,565
GFF474
GFF475 - hypothetical protein, at 476,562 to 477,026
GFF475
Position (kb) 474
475
476 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 473.077 kb on + strand, within GFF472 at 473.085 kb on - strand, within GFF472 at 473.085 kb on - strand, within GFF472 at 473.085 kb on - strand, within GFF472 at 473.092 kb on + strand, within GFF472 at 473.092 kb on + strand, within GFF472 at 473.092 kb on + strand, within GFF472 at 473.100 kb on - strand, within GFF472 at 473.100 kb on - strand, within GFF472 at 473.100 kb on - strand, within GFF472 at 473.100 kb on - strand, within GFF472 at 473.913 kb on - strand at 473.928 kb on - strand at 473.928 kb on - strand at 473.928 kb on - strand at 473.930 kb on - strand at 473.932 kb on + strand at 473.948 kb on - strand at 473.948 kb on - strand at 473.988 kb on - strand at 474.003 kb on - strand at 475.945 kb on + strand at 475.945 kb on + strand at 475.945 kb on + strand at 475.945 kb on + strand at 475.945 kb on + strand at 475.945 kb on + strand at 475.953 kb on - strand at 475.991 kb on + strand at 475.991 kb on + strand at 475.991 kb on + strand at 475.991 kb on + strand at 475.991 kb on + strand at 475.991 kb on + strand at 475.991 kb on + strand at 475.991 kb on + strand at 475.991 kb on + strand at 475.999 kb on - strand at 475.999 kb on - strand at 475.999 kb on - strand at 475.999 kb on - strand at 475.999 kb on - strand at 475.999 kb on - strand at 475.999 kb on - strand at 475.999 kb on - strand at 475.999 kb on - strand at 475.999 kb on - strand at 475.999 kb on - strand at 476.014 kb on + strand at 476.020 kb on + strand at 476.021 kb on + strand at 476.022 kb on - strand at 476.029 kb on - strand at 476.048 kb on - strand at 476.048 kb on - strand at 476.052 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.070 kb on + strand at 476.078 kb on - strand at 476.078 kb on - strand at 476.078 kb on - strand at 476.078 kb on - strand at 476.078 kb on - strand at 476.078 kb on - strand at 476.078 kb on - strand at 476.078 kb on - strand at 476.078 kb on - strand at 476.078 kb on - strand at 476.078 kb on - strand at 476.078 kb on - strand at 476.078 kb on - strand at 476.078 kb on - strand at 476.078 kb on - strand at 476.078 kb on - strand at 476.078 kb on - strand at 476.087 kb on + strand at 476.089 kb on + strand at 476.090 kb on + strand at 476.090 kb on + strand at 476.090 kb on + strand at 476.097 kb on - strand at 476.098 kb on - strand at 476.116 kb on + strand at 476.116 kb on + strand at 476.124 kb on - strand at 476.151 kb on + strand, within GFF474 at 476.154 kb on - strand, within GFF474 at 476.156 kb on + strand, within GFF474 at 476.156 kb on + strand, within GFF474 at 476.156 kb on + strand, within GFF474 at 476.161 kb on + strand, within GFF474 at 476.161 kb on - strand, within GFF474 at 476.166 kb on + strand, within GFF474 at 476.166 kb on + strand, within GFF474 at 476.166 kb on + strand, within GFF474 at 476.174 kb on - strand, within GFF474 at 476.174 kb on - strand, within GFF474 at 476.174 kb on - strand, within GFF474 at 476.174 kb on - strand, within GFF474 at 476.174 kb on - strand, within GFF474 at 476.174 kb on - strand, within GFF474 at 476.174 kb on - strand, within GFF474 at 476.179 kb on - strand, within GFF474 at 476.234 kb on + strand, within GFF474 at 476.242 kb on - strand, within GFF474 at 476.250 kb on - strand, within GFF474 at 476.250 kb on - strand, within GFF474 at 476.267 kb on + strand, within GFF474 at 476.275 kb on - strand, within GFF474 at 476.282 kb on - strand, within GFF474 at 476.288 kb on - strand, within GFF474 at 476.289 kb on + strand, within GFF474 at 476.295 kb on - strand, within GFF474 at 476.315 kb on - strand, within GFF474 at 476.316 kb on + strand, within GFF474 at 476.358 kb on + strand, within GFF474 at 476.358 kb on + strand, within GFF474 at 476.358 kb on + strand, within GFF474 at 476.360 kb on - strand, within GFF474 at 476.366 kb on - strand, within GFF474 at 476.377 kb on - strand, within GFF474 at 476.377 kb on - strand, within GFF474 at 476.397 kb on + strand, within GFF474 at 476.397 kb on + strand, within GFF474 at 476.400 kb on - strand, within GFF474 at 476.405 kb on - strand, within GFF474 at 476.405 kb on - strand, within GFF474 at 476.415 kb on - strand, within GFF474 at 476.465 kb on - strand, within GFF474 at 476.500 kb on + strand, within GFF474 at 476.513 kb on - strand, within GFF474 at 476.523 kb on - strand at 476.523 kb on - strand at 476.550 kb on + strand at 476.550 kb on + strand at 476.553 kb on - strand at 476.557 kb on - strand at 476.557 kb on - strand at 476.570 kb on - strand at 476.581 kb on + strand at 476.581 kb on + strand at 476.581 kb on + strand at 476.581 kb on + strand at 476.581 kb on + strand at 476.581 kb on + strand at 476.581 kb on + strand at 476.589 kb on - strand at 476.589 kb on - strand at 476.589 kb on - strand at 476.589 kb on - strand at 476.599 kb on - strand at 476.600 kb on + strand at 476.618 kb on - strand, within GFF475 at 476.620 kb on - strand, within GFF475 at 476.628 kb on + strand, within GFF475 at 476.636 kb on - strand, within GFF475 at 476.636 kb on - strand, within GFF475 at 476.660 kb on + strand, within GFF475 at 476.661 kb on - strand, within GFF475 at 476.738 kb on - strand, within GFF475 at 476.765 kb on - strand, within GFF475 at 476.774 kb on + strand, within GFF475 at 476.775 kb on + strand, within GFF475 at 476.791 kb on + strand, within GFF475 at 476.801 kb on + strand, within GFF475 at 476.805 kb on - strand, within GFF475 at 476.885 kb on + strand, within GFF475 at 476.885 kb on + strand, within GFF475
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 473,077 + GFF472 0.27 -1.1 473,085 - GFF472 0.28 -1.5 473,085 - GFF472 0.28 +0.1 473,085 - GFF472 0.28 -0.2 473,092 + GFF472 0.29 -0.6 473,092 + GFF472 0.29 +0.9 473,092 + GFF472 0.29 +2.1 473,100 - GFF472 0.29 +0.1 473,100 - GFF472 0.29 -0.9 473,100 - GFF472 0.29 +0.6 473,100 - GFF472 0.29 +1.5 473,913 - +1.0 473,928 - +0.6 473,928 - +0.6 473,928 - +1.6 473,930 - -2.6 473,932 + -0.1 473,948 - -1.7 473,948 - -0.1 473,988 - -1.7 474,003 - -1.1 475,945 + -2.1 475,945 + +0.8 475,945 + +0.3 475,945 + +0.2 475,945 + -1.1 475,945 + -1.1 475,953 - +0.7 475,991 + +0.1 475,991 + -1.2 475,991 + +0.2 475,991 + -1.4 475,991 + -0.1 475,991 + -2.1 475,991 + +0.1 475,991 + -0.1 475,991 + -0.4 475,999 - +0.6 475,999 - +0.2 475,999 - -0.4 475,999 - +1.4 475,999 - -1.2 475,999 - -0.9 475,999 - -2.2 475,999 - -0.6 475,999 - -1.2 475,999 - -0.6 475,999 - +0.1 476,014 + +0.1 476,020 + -1.0 476,021 + -2.1 476,022 - -1.5 476,029 - +0.0 476,048 - +1.1 476,048 - -2.1 476,052 + +0.8 476,070 + +1.2 476,070 + -0.4 476,070 + -0.6 476,070 + -0.4 476,070 + -0.2 476,070 + +1.6 476,070 + +0.2 476,070 + -0.1 476,070 + -0.4 476,070 + -1.1 476,070 + -0.1 476,070 + +1.7 476,070 + +0.2 476,070 + -0.2 476,070 + -0.2 476,070 + +0.5 476,070 + -2.2 476,070 + -1.4 476,070 + +0.9 476,070 + +0.1 476,070 + -1.1 476,070 + +0.1 476,070 + +0.3 476,070 + -1.1 476,070 + -1.7 476,070 + -0.7 476,078 - +0.1 476,078 - -0.9 476,078 - -0.4 476,078 - +0.0 476,078 - +1.6 476,078 - +0.2 476,078 - -1.1 476,078 - +0.9 476,078 - +0.0 476,078 - -0.3 476,078 - -2.1 476,078 - -0.1 476,078 - +0.4 476,078 - +1.2 476,078 - +0.5 476,078 - -0.7 476,078 - -1.2 476,087 + +0.4 476,089 + -0.9 476,090 + +0.0 476,090 + -0.9 476,090 + -1.8 476,097 - +1.7 476,098 - +0.9 476,116 + +0.4 476,116 + +0.2 476,124 - +0.3 476,151 + GFF474 0.15 -0.0 476,154 - GFF474 0.15 +0.6 476,156 + GFF474 0.16 -2.2 476,156 + GFF474 0.16 -1.8 476,156 + GFF474 0.16 +0.2 476,161 + GFF474 0.17 -1.1 476,161 - GFF474 0.17 -1.2 476,166 + GFF474 0.18 -0.1 476,166 + GFF474 0.18 +0.5 476,166 + GFF474 0.18 -0.5 476,174 - GFF474 0.19 +0.0 476,174 - GFF474 0.19 -1.7 476,174 - GFF474 0.19 -1.2 476,174 - GFF474 0.19 -1.2 476,174 - GFF474 0.19 +0.7 476,174 - GFF474 0.19 +0.3 476,174 - GFF474 0.19 -1.0 476,179 - GFF474 0.20 -0.8 476,234 + GFF474 0.32 +0.0 476,242 - GFF474 0.33 -0.9 476,250 - GFF474 0.35 +1.4 476,250 - GFF474 0.35 +0.8 476,267 + GFF474 0.38 -0.3 476,275 - GFF474 0.40 +1.0 476,282 - GFF474 0.42 +0.4 476,288 - GFF474 0.43 -1.3 476,289 + GFF474 0.43 +0.7 476,295 - GFF474 0.44 -0.4 476,315 - GFF474 0.48 +0.2 476,316 + GFF474 0.49 +0.7 476,358 + GFF474 0.57 -0.6 476,358 + GFF474 0.57 -0.0 476,358 + GFF474 0.57 +0.4 476,360 - GFF474 0.58 -0.2 476,366 - GFF474 0.59 -0.1 476,377 - GFF474 0.61 +1.4 476,377 - GFF474 0.61 -1.3 476,397 + GFF474 0.65 +0.1 476,397 + GFF474 0.65 +0.9 476,400 - GFF474 0.66 -0.5 476,405 - GFF474 0.67 -0.1 476,405 - GFF474 0.67 -0.6 476,415 - GFF474 0.69 +0.7 476,465 - GFF474 0.79 -1.5 476,500 + GFF474 0.86 -0.0 476,513 - GFF474 0.89 -0.2 476,523 - -0.7 476,523 - +0.4 476,550 + +0.5 476,550 + -1.5 476,553 - +0.8 476,557 - -0.2 476,557 - +0.2 476,570 - -1.1 476,581 + +0.9 476,581 + -2.2 476,581 + -1.1 476,581 + +0.9 476,581 + -0.4 476,581 + +0.0 476,581 + +1.2 476,589 - -2.3 476,589 - +0.0 476,589 - +0.2 476,589 - -3.4 476,599 - -0.2 476,600 + -1.1 476,618 - GFF475 0.12 -0.8 476,620 - GFF475 0.12 +0.9 476,628 + GFF475 0.14 +1.2 476,636 - GFF475 0.16 -0.8 476,636 - GFF475 0.16 -1.4 476,660 + GFF475 0.21 -0.2 476,661 - GFF475 0.21 -2.3 476,738 - GFF475 0.38 -1.8 476,765 - GFF475 0.44 -1.5 476,774 + GFF475 0.46 -0.4 476,775 + GFF475 0.46 -0.5 476,791 + GFF475 0.49 -0.4 476,801 + GFF475 0.51 -0.9 476,805 - GFF475 0.52 -1.5 476,885 + GFF475 0.69 -1.5 476,885 + GFF475 0.69 -1.8
Or see this region's nucleotide sequence