Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4699 and GFF4700 are separated by 689 nucleotides GFF4700 and GFF4701 are separated by 1 nucleotides GFF4701 and GFF4702 are separated by 208 nucleotides
GFF4699 - hypothetical protein, at 4,701,574 to 4,701,798
GFF4699
GFF4700 - Mobile element protein, at 4,702,488 to 4,702,598
GFF4700
GFF4701 - Mobile element protein, at 4,702,600 to 4,702,812
GFF4701
GFF4702 - hypothetical protein, at 4,703,021 to 4,704,232
GFF4702
Position (kb) 4702
4703 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4701.654 kb on + strand, within GFF4699 at 4701.670 kb on + strand, within GFF4699 at 4701.686 kb on - strand, within GFF4699 at 4701.694 kb on - strand, within GFF4699 at 4701.778 kb on - strand at 4701.884 kb on - strand at 4701.988 kb on + strand at 4702.017 kb on + strand at 4702.020 kb on - strand at 4702.025 kb on - strand at 4702.025 kb on - strand at 4702.025 kb on - strand at 4702.034 kb on + strand at 4702.049 kb on + strand at 4702.057 kb on - strand at 4702.063 kb on - strand at 4702.081 kb on - strand at 4702.088 kb on - strand at 4702.103 kb on + strand at 4702.117 kb on + strand at 4702.142 kb on + strand at 4702.148 kb on + strand at 4702.148 kb on + strand at 4702.149 kb on + strand at 4702.156 kb on - strand at 4702.162 kb on - strand at 4702.172 kb on + strand at 4702.185 kb on + strand at 4702.185 kb on + strand at 4702.185 kb on + strand at 4702.185 kb on + strand at 4702.193 kb on - strand at 4702.198 kb on - strand at 4702.206 kb on + strand at 4702.216 kb on + strand at 4702.246 kb on - strand at 4702.256 kb on - strand at 4702.270 kb on + strand at 4702.273 kb on - strand at 4702.278 kb on - strand at 4702.278 kb on - strand at 4702.286 kb on + strand at 4702.296 kb on + strand at 4702.304 kb on - strand at 4702.304 kb on - strand at 4702.304 kb on - strand at 4702.306 kb on + strand at 4702.306 kb on + strand at 4702.306 kb on + strand at 4702.306 kb on + strand at 4702.306 kb on + strand at 4702.314 kb on - strand at 4702.314 kb on - strand at 4702.314 kb on - strand at 4702.314 kb on - strand at 4702.377 kb on + strand at 4702.421 kb on - strand at 4702.421 kb on - strand at 4702.421 kb on - strand at 4702.451 kb on - strand at 4702.461 kb on - strand at 4702.461 kb on - strand at 4702.777 kb on + strand, within GFF4701 at 4702.787 kb on + strand, within GFF4701 at 4702.832 kb on + strand at 4702.840 kb on - strand at 4702.849 kb on - strand at 4702.859 kb on - strand at 4702.871 kb on + strand at 4702.876 kb on - strand at 4702.879 kb on - strand at 4702.906 kb on - strand at 4702.934 kb on - strand at 4702.962 kb on + strand at 4702.970 kb on - strand at 4702.970 kb on - strand at 4702.975 kb on - strand at 4702.977 kb on + strand at 4702.998 kb on + strand at 4703.028 kb on + strand at 4703.034 kb on + strand at 4703.035 kb on + strand at 4703.036 kb on - strand at 4703.039 kb on + strand at 4703.042 kb on - strand at 4703.042 kb on - strand at 4703.047 kb on - strand at 4703.093 kb on - strand at 4703.111 kb on + strand at 4703.119 kb on - strand at 4703.137 kb on + strand at 4703.144 kb on - strand, within GFF4702 at 4703.145 kb on - strand, within GFF4702 at 4703.145 kb on - strand, within GFF4702 at 4703.146 kb on + strand, within GFF4702 at 4703.181 kb on + strand, within GFF4702 at 4703.182 kb on - strand, within GFF4702 at 4703.182 kb on - strand, within GFF4702 at 4703.210 kb on + strand, within GFF4702 at 4703.210 kb on + strand, within GFF4702 at 4703.218 kb on - strand, within GFF4702 at 4703.218 kb on - strand, within GFF4702 at 4703.242 kb on + strand, within GFF4702 at 4703.242 kb on + strand, within GFF4702 at 4703.249 kb on + strand, within GFF4702 at 4703.250 kb on - strand, within GFF4702 at 4703.255 kb on - strand, within GFF4702 at 4703.262 kb on + strand, within GFF4702 at 4703.272 kb on + strand, within GFF4702 at 4703.275 kb on - strand, within GFF4702 at 4703.280 kb on - strand, within GFF4702 at 4703.280 kb on - strand, within GFF4702 at 4703.280 kb on - strand, within GFF4702 at 4703.280 kb on - strand, within GFF4702 at 4703.282 kb on + strand, within GFF4702 at 4703.282 kb on + strand, within GFF4702 at 4703.282 kb on + strand, within GFF4702 at 4703.290 kb on - strand, within GFF4702 at 4703.290 kb on - strand, within GFF4702 at 4703.290 kb on - strand, within GFF4702 at 4703.321 kb on - strand, within GFF4702 at 4703.322 kb on - strand, within GFF4702 at 4703.324 kb on - strand, within GFF4702 at 4703.332 kb on + strand, within GFF4702 at 4703.332 kb on + strand, within GFF4702 at 4703.332 kb on + strand, within GFF4702 at 4703.332 kb on + strand, within GFF4702 at 4703.332 kb on + strand, within GFF4702 at 4703.332 kb on + strand, within GFF4702 at 4703.332 kb on + strand, within GFF4702 at 4703.332 kb on + strand, within GFF4702 at 4703.332 kb on + strand, within GFF4702 at 4703.332 kb on + strand, within GFF4702 at 4703.332 kb on + strand, within GFF4702 at 4703.332 kb on + strand, within GFF4702 at 4703.340 kb on - strand, within GFF4702 at 4703.340 kb on - strand, within GFF4702 at 4703.340 kb on - strand, within GFF4702 at 4703.340 kb on - strand, within GFF4702 at 4703.340 kb on - strand, within GFF4702 at 4703.340 kb on - strand, within GFF4702 at 4703.340 kb on - strand, within GFF4702 at 4703.340 kb on - strand, within GFF4702 at 4703.351 kb on + strand, within GFF4702 at 4703.383 kb on - strand, within GFF4702 at 4703.411 kb on + strand, within GFF4702 at 4703.431 kb on + strand, within GFF4702 at 4703.436 kb on + strand, within GFF4702 at 4703.441 kb on + strand, within GFF4702 at 4703.444 kb on - strand, within GFF4702 at 4703.449 kb on - strand, within GFF4702 at 4703.449 kb on - strand, within GFF4702 at 4703.449 kb on - strand, within GFF4702 at 4703.449 kb on - strand, within GFF4702 at 4703.449 kb on - strand, within GFF4702 at 4703.449 kb on - strand, within GFF4702 at 4703.449 kb on - strand, within GFF4702 at 4703.449 kb on - strand, within GFF4702 at 4703.493 kb on - strand, within GFF4702 at 4703.498 kb on - strand, within GFF4702 at 4703.498 kb on - strand, within GFF4702 at 4703.515 kb on + strand, within GFF4702 at 4703.540 kb on - strand, within GFF4702 at 4703.540 kb on - strand, within GFF4702 at 4703.542 kb on - strand, within GFF4702 at 4703.542 kb on - strand, within GFF4702 at 4703.542 kb on - strand, within GFF4702 at 4703.542 kb on - strand, within GFF4702 at 4703.551 kb on - strand, within GFF4702 at 4703.551 kb on - strand, within GFF4702 at 4703.556 kb on + strand, within GFF4702 at 4703.556 kb on + strand, within GFF4702 at 4703.566 kb on + strand, within GFF4702 at 4703.591 kb on + strand, within GFF4702 at 4703.598 kb on - strand, within GFF4702 at 4703.599 kb on + strand, within GFF4702 at 4703.611 kb on - strand, within GFF4702 at 4703.618 kb on + strand, within GFF4702 at 4703.653 kb on - strand, within GFF4702 at 4703.670 kb on + strand, within GFF4702 at 4703.684 kb on - strand, within GFF4702 at 4703.684 kb on - strand, within GFF4702 at 4703.701 kb on + strand, within GFF4702 at 4703.717 kb on - strand, within GFF4702 at 4703.734 kb on + strand, within GFF4702 at 4703.734 kb on + strand, within GFF4702 at 4703.734 kb on + strand, within GFF4702 at 4703.734 kb on + strand, within GFF4702 at 4703.734 kb on + strand, within GFF4702 at 4703.734 kb on + strand, within GFF4702 at 4703.734 kb on + strand, within GFF4702 at 4703.734 kb on + strand, within GFF4702 at 4703.734 kb on + strand, within GFF4702 at 4703.734 kb on + strand, within GFF4702 at 4703.734 kb on + strand, within GFF4702 at 4703.734 kb on + strand, within GFF4702 at 4703.742 kb on - strand, within GFF4702 at 4703.742 kb on - strand, within GFF4702 at 4703.742 kb on - strand, within GFF4702 at 4703.742 kb on - strand, within GFF4702 at 4703.742 kb on - strand, within GFF4702 at 4703.742 kb on - strand, within GFF4702 at 4703.742 kb on - strand, within GFF4702 at 4703.742 kb on - strand, within GFF4702 at 4703.742 kb on - strand, within GFF4702 at 4703.742 kb on - strand, within GFF4702 at 4703.742 kb on - strand, within GFF4702 at 4703.742 kb on - strand, within GFF4702 at 4703.742 kb on - strand, within GFF4702 at 4703.742 kb on - strand, within GFF4702 at 4703.759 kb on + strand, within GFF4702 at 4703.761 kb on - strand, within GFF4702 at 4703.762 kb on - strand, within GFF4702 at 4703.762 kb on - strand, within GFF4702 at 4703.762 kb on - strand, within GFF4702 at 4703.765 kb on + strand, within GFF4702 at 4703.769 kb on - strand, within GFF4702 at 4703.769 kb on - strand, within GFF4702 at 4703.798 kb on + strand, within GFF4702
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 4,701,654 + GFF4699 0.36 -1.7 4,701,670 + GFF4699 0.43 -0.5 4,701,686 - GFF4699 0.50 -1.9 4,701,694 - GFF4699 0.53 +0.3 4,701,778 - +0.0 4,701,884 - -1.5 4,701,988 + +0.8 4,702,017 + -0.1 4,702,020 - +0.7 4,702,025 - -2.3 4,702,025 - +0.1 4,702,025 - +0.4 4,702,034 + +1.1 4,702,049 + -0.4 4,702,057 - +0.6 4,702,063 - -0.3 4,702,081 - +0.4 4,702,088 - +1.5 4,702,103 + -0.7 4,702,117 + +1.2 4,702,142 + +0.3 4,702,148 + +0.2 4,702,148 + -1.3 4,702,149 + +0.6 4,702,156 - -0.9 4,702,162 - +1.4 4,702,172 + +0.4 4,702,185 + -0.3 4,702,185 + +0.4 4,702,185 + +1.2 4,702,185 + +0.0 4,702,193 - -0.1 4,702,198 - +0.4 4,702,206 + -0.6 4,702,216 + -0.6 4,702,246 - -0.1 4,702,256 - -0.4 4,702,270 + +0.9 4,702,273 - +0.2 4,702,278 - -1.0 4,702,278 - -0.5 4,702,286 + +0.5 4,702,296 + +1.4 4,702,304 - -0.4 4,702,304 - +1.4 4,702,304 - -1.6 4,702,306 + +0.8 4,702,306 + +0.9 4,702,306 + +0.3 4,702,306 + -0.7 4,702,306 + -1.4 4,702,314 - +0.2 4,702,314 - +0.6 4,702,314 - -1.8 4,702,314 - +1.5 4,702,377 + +1.6 4,702,421 - +0.8 4,702,421 - +0.4 4,702,421 - +0.2 4,702,451 - +0.0 4,702,461 - -1.4 4,702,461 - +0.3 4,702,777 + GFF4701 0.83 -0.8 4,702,787 + GFF4701 0.88 +0.2 4,702,832 + -1.2 4,702,840 - -0.0 4,702,849 - -1.0 4,702,859 - +0.5 4,702,871 + +1.9 4,702,876 - -0.4 4,702,879 - +1.2 4,702,906 - -0.1 4,702,934 - +1.3 4,702,962 + +1.8 4,702,970 - +0.6 4,702,970 - +0.5 4,702,975 - +0.8 4,702,977 + -0.4 4,702,998 + +1.6 4,703,028 + +1.3 4,703,034 + +1.6 4,703,035 + -1.0 4,703,036 - -1.2 4,703,039 + +0.3 4,703,042 - -1.3 4,703,042 - +0.3 4,703,047 - +0.6 4,703,093 - +1.0 4,703,111 + -1.4 4,703,119 - +1.2 4,703,137 + -1.8 4,703,144 - GFF4702 0.10 +0.9 4,703,145 - GFF4702 0.10 +0.6 4,703,145 - GFF4702 0.10 +1.1 4,703,146 + GFF4702 0.10 -0.8 4,703,181 + GFF4702 0.13 -0.8 4,703,182 - GFF4702 0.13 -0.0 4,703,182 - GFF4702 0.13 -1.4 4,703,210 + GFF4702 0.16 -0.9 4,703,210 + GFF4702 0.16 -0.3 4,703,218 - GFF4702 0.16 -1.1 4,703,218 - GFF4702 0.16 -1.1 4,703,242 + GFF4702 0.18 +0.0 4,703,242 + GFF4702 0.18 +0.6 4,703,249 + GFF4702 0.19 -0.6 4,703,250 - GFF4702 0.19 -0.5 4,703,255 - GFF4702 0.19 +0.4 4,703,262 + GFF4702 0.20 +0.6 4,703,272 + GFF4702 0.21 +0.2 4,703,275 - GFF4702 0.21 -0.1 4,703,280 - GFF4702 0.21 +0.2 4,703,280 - GFF4702 0.21 +0.8 4,703,280 - GFF4702 0.21 -0.9 4,703,280 - GFF4702 0.21 -0.0 4,703,282 + GFF4702 0.22 -0.4 4,703,282 + GFF4702 0.22 -0.7 4,703,282 + GFF4702 0.22 +0.1 4,703,290 - GFF4702 0.22 -0.4 4,703,290 - GFF4702 0.22 +0.1 4,703,290 - GFF4702 0.22 -1.4 4,703,321 - GFF4702 0.25 +0.3 4,703,322 - GFF4702 0.25 +0.5 4,703,324 - GFF4702 0.25 +0.5 4,703,332 + GFF4702 0.26 +0.9 4,703,332 + GFF4702 0.26 -0.2 4,703,332 + GFF4702 0.26 -2.5 4,703,332 + GFF4702 0.26 +0.6 4,703,332 + GFF4702 0.26 +0.8 4,703,332 + GFF4702 0.26 +1.3 4,703,332 + GFF4702 0.26 +1.1 4,703,332 + GFF4702 0.26 +0.7 4,703,332 + GFF4702 0.26 -0.9 4,703,332 + GFF4702 0.26 +0.8 4,703,332 + GFF4702 0.26 +1.6 4,703,332 + GFF4702 0.26 -2.0 4,703,340 - GFF4702 0.26 +0.1 4,703,340 - GFF4702 0.26 -0.3 4,703,340 - GFF4702 0.26 -1.3 4,703,340 - GFF4702 0.26 +0.3 4,703,340 - GFF4702 0.26 +0.9 4,703,340 - GFF4702 0.26 +0.5 4,703,340 - GFF4702 0.26 -1.0 4,703,340 - GFF4702 0.26 +1.0 4,703,351 + GFF4702 0.27 +0.6 4,703,383 - GFF4702 0.30 -1.3 4,703,411 + GFF4702 0.32 +1.0 4,703,431 + GFF4702 0.34 -1.4 4,703,436 + GFF4702 0.34 +0.8 4,703,441 + GFF4702 0.35 +0.3 4,703,444 - GFF4702 0.35 +0.7 4,703,449 - GFF4702 0.35 +1.1 4,703,449 - GFF4702 0.35 -1.7 4,703,449 - GFF4702 0.35 -1.3 4,703,449 - GFF4702 0.35 +0.3 4,703,449 - GFF4702 0.35 +0.8 4,703,449 - GFF4702 0.35 +0.3 4,703,449 - GFF4702 0.35 +0.6 4,703,449 - GFF4702 0.35 -1.3 4,703,493 - GFF4702 0.39 -0.4 4,703,498 - GFF4702 0.39 -0.7 4,703,498 - GFF4702 0.39 -2.9 4,703,515 + GFF4702 0.41 +1.0 4,703,540 - GFF4702 0.43 +0.6 4,703,540 - GFF4702 0.43 +0.1 4,703,542 - GFF4702 0.43 +0.5 4,703,542 - GFF4702 0.43 +0.3 4,703,542 - GFF4702 0.43 -1.2 4,703,542 - GFF4702 0.43 -1.5 4,703,551 - GFF4702 0.44 -0.2 4,703,551 - GFF4702 0.44 -1.4 4,703,556 + GFF4702 0.44 -0.8 4,703,556 + GFF4702 0.44 +0.7 4,703,566 + GFF4702 0.45 -0.3 4,703,591 + GFF4702 0.47 +0.1 4,703,598 - GFF4702 0.48 +1.1 4,703,599 + GFF4702 0.48 +1.3 4,703,611 - GFF4702 0.49 +1.2 4,703,618 + GFF4702 0.49 +1.2 4,703,653 - GFF4702 0.52 +0.6 4,703,670 + GFF4702 0.54 +0.6 4,703,684 - GFF4702 0.55 +0.8 4,703,684 - GFF4702 0.55 -0.2 4,703,701 + GFF4702 0.56 -0.6 4,703,717 - GFF4702 0.57 +0.6 4,703,734 + GFF4702 0.59 +0.3 4,703,734 + GFF4702 0.59 -0.4 4,703,734 + GFF4702 0.59 -0.3 4,703,734 + GFF4702 0.59 -0.3 4,703,734 + GFF4702 0.59 -1.4 4,703,734 + GFF4702 0.59 +0.4 4,703,734 + GFF4702 0.59 -0.4 4,703,734 + GFF4702 0.59 +0.4 4,703,734 + GFF4702 0.59 +0.9 4,703,734 + GFF4702 0.59 -0.7 4,703,734 + GFF4702 0.59 +0.3 4,703,734 + GFF4702 0.59 +0.9 4,703,742 - GFF4702 0.59 +0.1 4,703,742 - GFF4702 0.59 -1.3 4,703,742 - GFF4702 0.59 +0.8 4,703,742 - GFF4702 0.59 -0.6 4,703,742 - GFF4702 0.59 -1.8 4,703,742 - GFF4702 0.59 -0.5 4,703,742 - GFF4702 0.59 +0.5 4,703,742 - GFF4702 0.59 +0.2 4,703,742 - GFF4702 0.59 -0.2 4,703,742 - GFF4702 0.59 -2.0 4,703,742 - GFF4702 0.59 -0.0 4,703,742 - GFF4702 0.59 +0.9 4,703,742 - GFF4702 0.59 +0.2 4,703,742 - GFF4702 0.59 +1.1 4,703,759 + GFF4702 0.61 -0.6 4,703,761 - GFF4702 0.61 -1.4 4,703,762 - GFF4702 0.61 -1.4 4,703,762 - GFF4702 0.61 +0.0 4,703,762 - GFF4702 0.61 +0.5 4,703,765 + GFF4702 0.61 -0.8 4,703,769 - GFF4702 0.62 -0.7 4,703,769 - GFF4702 0.62 +0.2 4,703,798 + GFF4702 0.64 -0.1
Or see this region's nucleotide sequence