Strain Fitness in Sphingobium sp. HT1-2 around GFF4622

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,615,621	+		GFF4620	0.72	-1.7
4,615,621	+		GFF4620	0.72	-1.9
4,615,621	+		GFF4620	0.72	-0.7
4,615,621	+		GFF4620	0.72	+0.0
4,615,621	+		GFF4620	0.72	-1.3
4,615,621	+		GFF4620	0.72	-2.2
4,615,629	-		GFF4620	0.73	-1.0
4,615,629	-		GFF4620	0.73	-0.0
4,615,629	-		GFF4620	0.73	+0.7
4,615,629	-		GFF4620	0.73	-0.6
4,615,629	-		GFF4620	0.73	-2.3
4,615,634	-		GFF4620	0.73	-1.2
4,615,646	-		GFF4620	0.75	-0.6
4,615,670	+		GFF4620	0.77	-1.4
4,615,677	-		GFF4620	0.78	-0.8
4,615,707	-		GFF4620	0.81	+0.7
4,615,713	+		GFF4620	0.81	-1.9
4,615,721	-		GFF4620	0.82	-0.6
4,615,721	-		GFF4620	0.82	-0.6
4,615,740	+		GFF4620	0.84	-0.3
4,615,746	-		GFF4620	0.85	+0.8
4,615,746	-		GFF4620	0.85	-1.6
4,615,750	+		GFF4620	0.85	+0.9
4,615,750	+		GFF4620	0.85	-1.4
4,615,750	+		GFF4620	0.85	-0.3
4,615,750	+		GFF4620	0.85	-0.4
4,615,750	+		GFF4620	0.85	-1.3
4,615,755	+		GFF4620	0.85	-0.0
4,615,755	+		GFF4620	0.85	-0.9
4,615,755	+		GFF4620	0.85	-1.6
4,615,755	+		GFF4620	0.85	-0.2
4,615,755	+		GFF4620	0.85	+0.3
4,615,755	+		GFF4620	0.85	-0.4
4,615,755	+		GFF4620	0.85	+0.7
4,615,755	+		GFF4620	0.85	-1.5
4,615,755	+		GFF4620	0.85	-1.7
4,615,758	-		GFF4620	0.86	-1.3
4,615,758	-		GFF4620	0.86	-0.3
4,615,758	-		GFF4620	0.86	-0.1
4,615,758	-		GFF4620	0.86	-0.2
4,615,763	-		GFF4620	0.86	-0.6
4,615,763	-		GFF4620	0.86	-1.6
4,615,763	-		GFF4620	0.86	+0.2
4,615,763	-		GFF4620	0.86	+0.1
4,615,763	-		GFF4620	0.86	+0.3
4,615,763	-		GFF4620	0.86	+0.2
4,615,763	-		GFF4620	0.86	-0.2
4,615,763	-		GFF4620	0.86	-0.3
4,615,763	-		GFF4620	0.86	-0.6
4,615,763	-		GFF4620	0.86	-0.4
4,615,777	+		GFF4620	0.88	-0.9
4,615,782	+		GFF4620	0.88	-0.7
4,615,782	+		GFF4620	0.88	-0.3
4,615,791	+		GFF4620	0.89	-0.9
4,615,791	-		GFF4620	0.89	-1.7
4,615,792	+		GFF4620	0.89	-2.3
4,615,792	+		GFF4620	0.89	-0.2
4,615,792	+		GFF4620	0.89	-0.9
4,615,792	+		GFF4620	0.89	-2.1
4,615,799	-		GFF4620	0.90	-0.3
4,615,802	+				-1.3
4,615,802	+				-1.9
4,615,802	+				-0.4
4,615,802	+				-1.0
4,615,802	+				-1.0
4,615,802	+				-0.3
4,615,802	+				+0.0
4,615,810	+				-0.2
4,615,810	-				-0.9
4,615,810	-				-1.3
4,615,810	-				-0.9
4,615,810	-				-0.9
4,615,810	-				+1.2
4,615,854	-				+1.4
4,615,862	-				-1.4
4,615,866	+				+2.1
4,615,906	+				+0.4
4,615,938	-				-1.9
4,615,938	-				-0.3
4,615,940	+				-1.1
4,615,992	+		GFF4621	0.17	-0.6
4,615,995	-		GFF4621	0.18	-0.4
4,615,997	+		GFF4621	0.19	+0.3
4,615,997	+		GFF4621	0.19	-1.0
4,615,997	+		GFF4621	0.19	+0.6
4,615,997	+		GFF4621	0.19	-2.4
4,615,997	+		GFF4621	0.19	-0.7
4,616,002	+		GFF4621	0.20	-0.4
4,616,002	+		GFF4621	0.20	-1.1
4,616,002	+		GFF4621	0.20	+0.5
4,616,002	+		GFF4621	0.20	-1.8
4,616,002	+		GFF4621	0.20	-2.2
4,616,005	-		GFF4621	0.21	+0.2
4,616,005	-		GFF4621	0.21	-1.8
4,616,005	-		GFF4621	0.21	+0.4
4,616,007	+		GFF4621	0.21	-1.0
4,616,007	+		GFF4621	0.21	-0.3
4,616,007	+		GFF4621	0.21	+0.4
4,616,007	+		GFF4621	0.21	-0.4
4,616,007	+		GFF4621	0.21	+0.7
4,616,007	+		GFF4621	0.21	+0.2
4,616,007	+		GFF4621	0.21	-0.5
4,616,007	+		GFF4621	0.21	-1.8
4,616,007	+		GFF4621	0.21	+0.0
4,616,007	+		GFF4621	0.21	+0.3
4,616,010	-		GFF4621	0.22	+0.4
4,616,010	-		GFF4621	0.22	-1.3
4,616,010	-		GFF4621	0.22	-0.7
4,616,012	+		GFF4621	0.23	+1.0
4,616,015	-		GFF4621	0.24	-1.3
4,616,015	-		GFF4621	0.24	-0.8
4,616,015	-		GFF4621	0.24	+0.0
4,616,015	-		GFF4621	0.24	+0.1
4,616,015	-		GFF4621	0.24	-1.3
4,616,015	-		GFF4621	0.24	+1.2
4,616,015	-		GFF4621	0.24	-0.0
4,616,020	-		GFF4621	0.25	+0.7
4,616,020	-		GFF4621	0.25	-0.2
4,616,025	-		GFF4621	0.27	+0.3
4,616,041	-		GFF4621	0.31	-0.9
4,616,050	-		GFF4621	0.34	+0.4
4,616,052	+		GFF4621	0.34	+0.8
4,616,052	+		GFF4621	0.34	+1.3
4,616,098	+		GFF4621	0.48	-3.4
4,616,106	+		GFF4621	0.50	-0.6
4,616,171	-		GFF4621	0.69	-1.9
4,616,184	+		GFF4621	0.73	-0.7
4,616,190	+		GFF4621	0.74	+0.3
4,616,197	+		GFF4621	0.77	-1.4
4,616,217	+		GFF4621	0.82	-1.1
4,616,225	-		GFF4621	0.85	-1.0
4,616,241	+		GFF4621	0.89	+0.2
4,616,249	-				-1.3
4,616,249	-				-1.6
4,616,284	+				+0.9
4,616,292	-				-0.1
4,616,312	+				+0.1
4,616,320	-				-0.8
4,616,328	+				-0.8
4,616,336	-				-0.6
4,616,346	+				-1.6
4,616,347	-				+0.1
4,616,361	+				+0.4
4,616,366	+				-1.5
4,616,366	+				+0.3
4,616,366	+				+0.1
4,616,366	+				-0.4
4,616,366	+				-1.3
4,616,366	+				+0.2
4,616,371	+				-2.3
4,616,371	+				-0.4
4,616,371	+				-0.4
4,616,371	+				-0.5
4,616,371	+				-1.3
4,616,371	+				-1.5
4,616,371	+				-1.6
4,616,371	+				+0.3
4,616,371	+				-0.6
4,616,371	+				-1.9
4,616,371	+				-0.9
4,616,371	+				-2.4
4,616,374	-				+0.6
4,616,374	-				-0.7
4,616,374	-				-0.6
4,616,374	-				+0.4
4,616,379	-				-1.6
4,616,379	-				-0.8
4,616,379	-				-0.0
4,616,379	-				-0.3
4,616,379	-				-1.3
4,616,379	-				-0.3
4,616,386	+				-0.4
4,616,386	+				-0.1
4,616,391	+				+0.0
4,616,391	+				-0.4
4,616,391	+				+0.0
4,616,391	+				+0.7
4,616,394	-				-1.9
4,616,394	-				-0.8
4,616,396	+				-2.0
4,616,396	+				-2.3
4,616,396	+				-0.3
4,616,396	+				-0.5
4,616,399	-				+0.2
4,616,399	-				-0.6
4,616,404	-				+0.3
4,616,404	-				+0.7
4,616,411	+				-1.1
4,616,454	+				+0.5
4,616,469	+				-0.2
4,616,469	+				+0.6
4,616,469	+				-2.0
4,616,469	+				-1.0
4,616,477	-				-0.9
4,616,477	-				+1.0
4,616,477	-				-0.4
4,616,529	+				-0.8
4,616,531	+				-0.2
4,616,552	+				-0.1
4,616,583	+				+1.2
4,616,583	+				-0.6
4,616,583	+				-0.9
4,616,585	+				-1.9
4,616,585	+				-1.1
4,616,585	+				+0.2
4,616,586	+				+0.2
4,616,586	+				-1.4
4,616,591	-				+0.1
4,616,591	-				-1.0
4,616,593	-				-1.4
4,616,593	-				-0.7
4,616,593	-				-0.8
4,616,593	-				-2.8
4,616,607	+				+0.1
4,616,607	+				-2.2
4,616,610	-				+0.3
4,616,610	-				-1.1
4,616,612	+				-0.4
4,616,615	-				-0.1
4,616,617	+				-0.1
4,616,618	+				-1.4
4,616,618	+				-2.9
4,616,618	+				-0.9
4,616,618	+				+0.7
4,616,618	+				-0.6
4,616,618	+				-0.8
4,616,618	+				-0.1
4,616,618	+				-2.8
4,616,618	+				+0.2
4,616,618	+				-2.6
4,616,618	+				+0.1
4,616,618	+				+0.3
4,616,618	+				-0.1
4,616,618	+				-1.0
4,616,620	-				-1.2
4,616,625	-				-0.8
4,616,626	-				+0.4
4,616,626	-				+0.4
4,616,626	-				-0.8
4,616,626	-				-0.1
4,616,626	-				+0.1
4,616,626	-				-1.8
4,616,626	-				+0.6
4,616,626	-				-0.9
4,616,626	-				-1.8
4,616,626	-				+0.5
4,616,626	-				-2.6
4,616,626	-				-1.5
4,616,626	-				-0.8
4,616,635	+				-0.3
4,616,635	+				-1.4
4,616,648	-				-2.6
4,616,688	-				-0.6
4,616,688	-				-1.3
4,616,715	-				-1.3
4,616,715	-				+0.1
4,616,718	+				+0.6
4,616,729	+				-0.3
4,616,731	-				-0.3
4,616,756	-				+0.3
4,616,764	-				+1.1
4,616,768	+				-2.0
4,616,776	-				+0.1
4,616,778	+				-0.7
4,616,792	-		GFF4622	0.11	-0.8
4,616,795	+		GFF4622	0.11	-2.7
4,616,803	+		GFF4622	0.11	-0.0
4,616,803	-		GFF4622	0.11	-2.5
4,616,824	+		GFF4622	0.13	+0.3
4,616,824	+		GFF4622	0.13	+0.1
4,616,832	-		GFF4622	0.13	+0.6
4,616,855	+		GFF4622	0.15	-1.6
4,616,855	+		GFF4622	0.15	+0.3
4,616,857	-		GFF4622	0.15	-0.5
4,616,857	-		GFF4622	0.15	-0.4
4,616,863	-		GFF4622	0.15	-0.6
4,616,863	-		GFF4622	0.15	-0.6
4,616,863	-		GFF4622	0.15	+1.9
4,616,887	+		GFF4622	0.17	-3.2
4,616,889	-		GFF4622	0.17	+0.9
4,616,895	-		GFF4622	0.17	-0.7
4,616,921	-		GFF4622	0.19	+0.7
4,616,926	+		GFF4622	0.19	-0.4
4,616,956	-		GFF4622	0.21	-1.8
4,617,002	+		GFF4622	0.24	-0.9
4,617,005	-		GFF4622	0.24	-1.9
4,617,007	+		GFF4622	0.24	-0.4
4,617,007	+		GFF4622	0.24	-0.5
4,617,007	+		GFF4622	0.24	-1.2
4,617,007	+		GFF4622	0.24	-0.5
4,617,007	+		GFF4622	0.24	-0.5
4,617,007	+		GFF4622	0.24	+0.2
4,617,007	+		GFF4622	0.24	-1.0
4,617,007	+		GFF4622	0.24	+0.2
4,617,010	-		GFF4622	0.24	-2.3
4,617,015	-		GFF4622	0.24	-1.3
4,617,015	-		GFF4622	0.24	-0.7
4,617,015	-		GFF4622	0.24	-1.0
4,617,015	-		GFF4622	0.24	-2.2
4,617,015	-		GFF4622	0.24	+0.3
4,617,015	-		GFF4622	0.24	-1.9
4,617,015	-		GFF4622	0.24	+1.1
4,617,015	-		GFF4622	0.24	-1.7
4,617,015	-		GFF4622	0.24	-0.7
4,617,015	-		GFF4622	0.24	-1.9
4,617,015	-		GFF4622	0.24	-0.4
4,617,048	-		GFF4622	0.26	-0.2
4,617,080	-		GFF4622	0.28	-0.6
4,617,092	+		GFF4622	0.29	-1.7
4,617,102	+		GFF4622	0.30	+1.1
4,617,102	+		GFF4622	0.30	+1.4
4,617,102	+		GFF4622	0.30	+0.6
4,617,109	+		GFF4622	0.30	-0.3
4,617,110	-		GFF4622	0.30	+0.1
4,617,110	-		GFF4622	0.30	-1.9
4,617,117	-		GFF4622	0.31	-0.6
4,617,122	+		GFF4622	0.31	+0.0
4,617,130	-		GFF4622	0.32	-1.6
4,617,130	-		GFF4622	0.32	-3.4
4,617,167	+		GFF4622	0.34	-0.3
4,617,167	+		GFF4622	0.34	-0.3
4,617,175	-		GFF4622	0.34	-2.3
4,617,178	+		GFF4622	0.35	+0.7
4,617,185	-		GFF4622	0.35	+0.4
4,617,187	+		GFF4622	0.35	+1.1
4,617,195	+		GFF4622	0.36	-1.9
4,617,201	+		GFF4622	0.36	-0.4
4,617,201	+		GFF4622	0.36	+0.5
4,617,201	+		GFF4622	0.36	-1.0
4,617,201	+		GFF4622	0.36	-0.4
4,617,201	+		GFF4622	0.36	+1.6
4,617,201	+		GFF4622	0.36	-1.6
4,617,201	+		GFF4622	0.36	+1.3
4,617,201	+		GFF4622	0.36	-1.0
4,617,209	-		GFF4622	0.36	+0.5
4,617,209	-		GFF4622	0.36	-2.4
4,617,209	-		GFF4622	0.36	-0.6
4,617,209	-		GFF4622	0.36	-2.2
4,617,209	-		GFF4622	0.36	+0.1
4,617,209	-		GFF4622	0.36	+0.1
4,617,209	-		GFF4622	0.36	+0.7
4,617,257	+		GFF4622	0.39	-0.2
4,617,262	+		GFF4622	0.40	+0.8
4,617,262	+		GFF4622	0.40	-0.3
4,617,271	-		GFF4622	0.40	-2.7
4,617,276	+		GFF4622	0.41	-1.4
4,617,302	-		GFF4622	0.42	-0.7
4,617,309	+		GFF4622	0.43	+1.0
4,617,309	+		GFF4622	0.43	+0.1
4,617,317	-		GFF4622	0.43	+0.2
4,617,317	-		GFF4622	0.43	-0.9
4,617,317	-		GFF4622	0.43	-0.9
4,617,317	-		GFF4622	0.43	+0.2
4,617,324	-		GFF4622	0.44	-0.2
4,617,324	-		GFF4622	0.44	+0.5
4,617,324	-		GFF4622	0.44	-1.9
4,617,358	+		GFF4622	0.46	-0.9
4,617,358	+		GFF4622	0.46	-0.5
4,617,366	-		GFF4622	0.46	+1.2
4,617,378	-		GFF4622	0.47	-0.7
4,617,379	+		GFF4622	0.47	+0.3
4,617,380	+		GFF4622	0.47	-2.9
4,617,380	+		GFF4622	0.47	+0.1
4,617,380	+		GFF4622	0.47	-0.4
4,617,380	+		GFF4622	0.47	+0.2
4,617,386	+		GFF4622	0.47	-1.8
4,617,388	-		GFF4622	0.47	+0.5
4,617,388	-		GFF4622	0.47	-0.8
4,617,388	-		GFF4622	0.47	-0.9
4,617,394	-		GFF4622	0.48	+0.3
4,617,394	-		GFF4622	0.48	-0.3
4,617,413	+		GFF4622	0.49	-0.9
4,617,421	-		GFF4622	0.50	-1.6
4,617,421	-		GFF4622	0.50	-1.1
4,617,427	-		GFF4622	0.50	-0.7
4,617,430	+		GFF4622	0.50	-1.4
4,617,444	-		GFF4622	0.51	-1.1
4,617,453	+		GFF4622	0.52	-1.6
4,617,467	-		GFF4622	0.52	-1.1
4,617,498	-		GFF4622	0.54	-0.3
4,617,533	+		GFF4622	0.56	-0.7
4,617,542	-		GFF4622	0.57	-0.9
4,617,548	+		GFF4622	0.57	-1.8
4,617,554	-		GFF4622	0.58	-1.9
4,617,554	-		GFF4622	0.58	+0.6
4,617,554	-		GFF4622	0.58	-0.2
4,617,554	-		GFF4622	0.58	+0.9
4,617,561	-		GFF4622	0.58	+0.4
4,617,582	+		GFF4622	0.59	+0.5
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4,618,105	-				-0.9
4,618,112	+				-0.9
4,618,120	-				-0.1
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4,618,178	-				-1.7
4,618,180	-				+0.3
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4,618,196	+				-0.4
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4,618,223	-				-1.7
4,618,223	-				+0.9
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4,618,225	+				-0.8
4,618,225	+				+0.8
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4,618,251	+				-1.4
4,618,251	+				+0.9
4,618,251	-				-2.7
4,618,252	+				-2.5
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4,618,260	-				+0.1
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4,618,285	+				-1.1
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4,618,285	+				+0.6
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4,618,288	-				-2.1
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4,618,467	-				+0.3
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4,618,533	-				-2.8
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4,618,624	+				+1.1
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