Strain Fitness in Sphingobium sp. HT1-2 around GFF4611

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,606,031	-		GFF4610	0.43	+0.7
4,606,049	+		GFF4610	0.44	-1.4
4,606,057	-		GFF4610	0.44	-2.0
4,606,101	+		GFF4610	0.47	-0.6
4,606,111	-		GFF4610	0.48	-1.4
4,606,140	-		GFF4610	0.50	-0.6
4,606,142	+		GFF4610	0.50	-0.6
4,606,180	-		GFF4610	0.53	+0.4
4,606,191	+		GFF4610	0.54	+1.7
4,606,209	+		GFF4610	0.55	+0.4
4,606,209	+		GFF4610	0.55	-1.4
4,606,209	+		GFF4610	0.55	-1.0
4,606,212	-		GFF4610	0.55	-1.5
4,606,224	+		GFF4610	0.56	-1.3
4,606,231	-		GFF4610	0.56	-0.0
4,606,244	+		GFF4610	0.57	-0.9
4,606,244	+		GFF4610	0.57	-1.4
4,606,252	-		GFF4610	0.58	-0.3
4,606,255	+		GFF4610	0.58	-1.4
4,606,256	+		GFF4610	0.58	-1.3
4,606,256	+		GFF4610	0.58	+0.0
4,606,256	+		GFF4610	0.58	+1.0
4,606,256	+		GFF4610	0.58	-0.3
4,606,257	-		GFF4610	0.58	+0.0
4,606,261	+		GFF4610	0.58	-1.2
4,606,264	-		GFF4610	0.59	-2.7
4,606,264	-		GFF4610	0.59	-1.0
4,606,264	-		GFF4610	0.59	+0.2
4,606,264	-		GFF4610	0.59	+0.4
4,606,264	-		GFF4610	0.59	+0.1
4,606,264	-		GFF4610	0.59	-2.1
4,606,268	+		GFF4610	0.59	+0.1
4,606,268	+		GFF4610	0.59	-1.9
4,606,269	-		GFF4610	0.59	-0.9
4,606,274	-		GFF4610	0.59	+0.6
4,606,297	-		GFF4610	0.61	-1.0
4,606,303	+		GFF4610	0.61	+0.0
4,606,325	+		GFF4610	0.63	-1.7
4,606,325	+		GFF4610	0.63	+0.1
4,606,325	+		GFF4610	0.63	+1.6
4,606,327	+		GFF4610	0.63	-2.3
4,606,327	-		GFF4610	0.63	-2.4
4,606,335	+		GFF4610	0.63	-2.5
4,606,335	-		GFF4610	0.63	-0.6
4,606,335	-		GFF4610	0.63	-0.4
4,606,339	+		GFF4610	0.64	+0.9
4,606,340	+		GFF4610	0.64	-1.2
4,606,343	-		GFF4610	0.64	-0.4
4,606,467	+		GFF4610	0.73	-2.2
4,606,468	+		GFF4610	0.73	+0.2
4,606,475	-		GFF4610	0.73	-0.6
4,606,475	-		GFF4610	0.73	-1.7
4,606,480	-		GFF4610	0.73	-1.2
4,606,481	-		GFF4610	0.74	-1.4
4,606,484	+		GFF4610	0.74	-0.9
4,606,485	-		GFF4610	0.74	-1.3
4,606,487	+		GFF4610	0.74	+0.1
4,606,492	-		GFF4610	0.74	-2.2
4,606,547	+		GFF4610	0.78	-3.3
4,606,547	+		GFF4610	0.78	-1.2
4,606,547	+		GFF4610	0.78	+0.0
4,606,547	+		GFF4610	0.78	-1.5
4,606,555	-		GFF4610	0.79	-1.9
4,606,555	-		GFF4610	0.79	-0.7
4,606,555	-		GFF4610	0.79	-0.2
4,606,561	-		GFF4610	0.79	-0.2
4,606,561	-		GFF4610	0.79	-0.8
4,606,565	+		GFF4610	0.79	+0.3
4,606,565	+		GFF4610	0.79	-1.5
4,606,565	+		GFF4610	0.79	+0.3
4,606,565	+		GFF4610	0.79	-0.6
4,606,565	+		GFF4610	0.79	-2.5
4,606,565	+		GFF4610	0.79	+0.5
4,606,565	+		GFF4610	0.79	-0.6
4,606,565	+		GFF4610	0.79	+0.2
4,606,566	-		GFF4610	0.79	+0.3
4,606,573	-		GFF4610	0.80	-0.0
4,606,573	-		GFF4610	0.80	-0.8
4,606,573	-		GFF4610	0.80	-1.5
4,606,573	-		GFF4610	0.80	+0.3
4,606,573	-		GFF4610	0.80	-1.5
4,606,573	-		GFF4610	0.80	-0.0
4,606,573	-		GFF4610	0.80	-0.1
4,606,573	-		GFF4610	0.80	+1.3
4,606,573	-		GFF4610	0.80	-0.7
4,606,573	-		GFF4610	0.80	-1.5
4,606,573	-		GFF4610	0.80	-0.7
4,606,573	-		GFF4610	0.80	-0.3
4,606,582	+		GFF4610	0.81	-0.5
4,606,582	+		GFF4610	0.81	+0.2
4,606,582	+		GFF4610	0.81	-1.6
4,606,590	-		GFF4610	0.81	+0.3
4,606,590	-		GFF4610	0.81	+0.4
4,606,590	-		GFF4610	0.81	-1.3
4,606,594	+		GFF4610	0.81	-0.5
4,606,606	-		GFF4610	0.82	+1.5
4,606,607	-		GFF4610	0.82	-1.6
4,606,618	+		GFF4610	0.83	-3.0
4,606,623	+		GFF4610	0.83	-1.5
4,606,626	-		GFF4610	0.84	-2.2
4,606,664	+		GFF4610	0.86	-0.4
4,606,676	+		GFF4610	0.87	-0.4
4,606,691	+		GFF4610	0.88	+1.0
4,606,691	+		GFF4610	0.88	+0.5
4,606,691	+		GFF4610	0.88	+0.4
4,606,691	+		GFF4610	0.88	+0.2
4,606,691	+		GFF4610	0.88	-0.6
4,606,694	-		GFF4610	0.88	-0.2
4,606,694	-		GFF4610	0.88	-0.8
4,606,699	-		GFF4610	0.89	-1.6
4,606,699	-		GFF4610	0.89	-1.2
4,606,742	+				-1.0
4,606,782	-				+0.6
4,606,809	-				+0.0
4,606,822	-				+0.0
4,606,822	-				-2.2
4,606,840	+				-0.9
4,606,851	+				-0.3
4,606,851	+				-2.5
4,606,851	+				-2.5
4,606,851	+				+0.2
4,606,851	+				-0.8
4,606,851	+				+0.3
4,606,851	+				-1.2
4,606,851	+				-1.4
4,606,854	-				+0.8
4,606,859	-				-2.2
4,606,859	-				+0.1
4,606,859	-				-1.5
4,606,859	-				-1.2
4,606,859	-				-1.4
4,606,859	-				+0.7
4,606,859	-				-0.3
4,606,859	-				-1.4
4,606,859	-				-0.5
4,606,859	-				+1.0
4,606,859	-				-0.7
4,606,859	-				+0.3
4,606,859	-				-2.6
4,606,860	-				-2.2
4,606,869	-				-0.1
4,606,883	+				-1.7
4,606,885	+				-0.8
4,606,885	+				+0.2
4,606,885	+				-0.7
4,606,885	+				-2.9
4,606,885	+				-1.0
4,606,885	+				-0.4
4,606,885	+				-1.1
4,606,885	+				+0.9
4,606,885	+				-1.2
4,606,885	+				-0.1
4,606,885	+				-2.3
4,606,885	+				-1.0
4,606,885	+				+0.5
4,606,885	+				-0.6
4,606,885	+				+0.2
4,606,885	+				-0.1
4,606,885	+				-0.6
4,606,893	-				-0.1
4,606,893	-				-0.5
4,606,893	-				-0.5
4,606,893	-				+0.3
4,606,893	-				-0.3
4,606,893	-				-0.9
4,606,893	-				-2.3
4,606,893	-				-0.2
4,606,893	-				-0.4
4,606,893	-				-1.0
4,606,904	+				-0.6
4,606,917	+				-0.7
4,606,922	+				-1.5
4,606,922	+				-1.2
4,606,922	+				+0.5
4,606,922	+				-0.1
4,606,922	+				-0.4
4,606,922	+				-1.0
4,606,928	-				-0.6
4,606,930	+				+0.0
4,606,930	-				-1.5
4,606,930	-				-1.3
4,606,930	-				+0.2
4,606,930	-				-2.4
4,606,930	-				-0.3
4,606,930	-				-0.6
4,606,932	+				-1.3
4,606,932	+				+0.7
4,606,963	-				-0.8
4,606,980	+				-1.9
4,606,985	+				+0.2
4,607,003	-				-0.1
4,607,012	+				+0.1
4,607,012	+				+0.5
4,607,015	-				-1.4
4,607,020	-				+1.4
4,607,024	-				+0.9
4,607,027	+				+0.7
4,607,037	-				-0.7
4,607,037	-				-1.8
4,607,052	+				+0.7
4,607,065	+				+1.6
4,607,071	+				+0.3
4,607,079	-				-1.3
4,607,079	-				-0.4
4,607,119	-		GFF4611	0.17	-1.4
4,607,127	-		GFF4611	0.18	-0.5
4,607,133	+		GFF4611	0.19	-0.7
4,607,139	-		GFF4611	0.20	-1.6
4,607,139	-		GFF4611	0.20	-0.5
4,607,150	+		GFF4611	0.22	-2.2
4,607,151	+		GFF4611	0.23	+0.8
4,607,151	+		GFF4611	0.23	-1.2
4,607,158	-		GFF4611	0.24	-0.5
4,607,158	-		GFF4611	0.24	-2.7
4,607,158	-		GFF4611	0.24	-0.4
4,607,159	-		GFF4611	0.24	-2.3
4,607,160	+		GFF4611	0.24	+0.3
4,607,161	+		GFF4611	0.24	+0.8
4,607,161	+		GFF4611	0.24	-1.4
4,607,161	+		GFF4611	0.24	+1.5
4,607,161	+		GFF4611	0.24	+0.8
4,607,161	+		GFF4611	0.24	-0.8
4,607,163	-		GFF4611	0.25	-1.2
4,607,163	-		GFF4611	0.25	-1.0
4,607,169	-		GFF4611	0.26	+1.7
4,607,169	-		GFF4611	0.26	-0.7
4,607,169	-		GFF4611	0.26	-0.5
4,607,169	-		GFF4611	0.26	-0.6
4,607,169	-		GFF4611	0.26	-1.8
4,607,176	-		GFF4611	0.27	-3.5
4,607,196	+		GFF4611	0.31	-0.8
4,607,196	+		GFF4611	0.31	-1.7
4,607,196	+		GFF4611	0.31	-0.9
4,607,196	+		GFF4611	0.31	-0.4
4,607,196	+		GFF4611	0.31	-0.6
4,607,199	-		GFF4611	0.31	-0.4
4,607,199	-		GFF4611	0.31	-0.3
4,607,204	-		GFF4611	0.32	-1.6
4,607,204	-		GFF4611	0.32	-0.2
4,607,204	-		GFF4611	0.32	-0.2
4,607,218	+		GFF4611	0.35	-1.0
4,607,218	+		GFF4611	0.35	-0.9
4,607,226	-		GFF4611	0.36	+0.7
4,607,227	+		GFF4611	0.36	+0.2
4,607,240	-		GFF4611	0.39	-1.6
4,607,240	-		GFF4611	0.39	+0.5
4,607,263	+		GFF4611	0.43	-0.2
4,607,267	-		GFF4611	0.44	-0.9
4,607,295	-		GFF4611	0.49	-0.2
4,607,334	+		GFF4611	0.56	+0.3
4,607,342	-		GFF4611	0.57	+0.2
4,607,344	+		GFF4611	0.58	+0.0
4,607,347	-		GFF4611	0.58	+0.9
4,607,351	-		GFF4611	0.59	+1.1
4,607,351	-		GFF4611	0.59	-0.6
4,607,351	-		GFF4611	0.59	+0.3
4,607,352	-		GFF4611	0.59	-0.4
4,607,355	+		GFF4611	0.60	+0.1
4,607,363	+		GFF4611	0.61	+1.1
4,607,370	+		GFF4611	0.62	-2.1
4,607,370	+		GFF4611	0.62	-1.4
4,607,370	+		GFF4611	0.62	+0.6
4,607,370	+		GFF4611	0.62	+0.0
4,607,378	-		GFF4611	0.64	-0.3
4,607,378	-		GFF4611	0.64	-0.5
4,607,380	-		GFF4611	0.64	+0.3
4,607,382	+		GFF4611	0.65	-2.4
4,607,382	+		GFF4611	0.65	-1.3
4,607,382	+		GFF4611	0.65	+0.7
4,607,393	+		GFF4611	0.67	-2.0
4,607,393	+		GFF4611	0.67	-0.6
4,607,393	+		GFF4611	0.67	-2.1
4,607,393	+		GFF4611	0.67	+0.4
4,607,437	-		GFF4611	0.75	-1.3
4,607,462	+		GFF4611	0.79	+0.7
4,607,465	+		GFF4611	0.80	-2.7
4,607,468	-		GFF4611	0.80	-1.8
4,607,470	+		GFF4611	0.81	-1.4
4,607,470	-		GFF4611	0.81	-2.4
4,607,486	+		GFF4611	0.84	-0.6
4,607,486	+		GFF4611	0.84	+0.3
4,607,501	+		GFF4611	0.86	-0.8
4,607,506	+		GFF4611	0.87	-0.9
4,607,506	+		GFF4611	0.87	-0.6
4,607,506	+		GFF4611	0.87	-1.3
4,607,514	-		GFF4611	0.89	+0.1
4,607,514	-		GFF4611	0.89	-1.0
4,607,514	-		GFF4611	0.89	-0.5
4,607,520	+		GFF4611	0.90	-1.2
4,607,528	-				-0.9
4,607,575	+				-0.3
4,607,575	+				-0.2
4,607,583	-				-1.3
4,607,583	-				+0.1
4,607,583	-				-1.4
4,607,583	-				-0.8
4,607,604	-				-2.7
4,607,655	-				+0.4
4,607,671	+		GFF4612	0.11	-0.6
4,607,671	+		GFF4612	0.11	-1.7
4,607,671	+		GFF4612	0.11	-2.8
4,607,671	+		GFF4612	0.11	-0.8
4,607,671	+		GFF4612	0.11	-0.0
4,607,671	+		GFF4612	0.11	-0.5
4,607,671	+		GFF4612	0.11	-0.8
4,607,671	+		GFF4612	0.11	-2.4
4,607,679	-		GFF4612	0.12	-1.2
4,607,679	-		GFF4612	0.12	-0.4
4,607,679	-		GFF4612	0.12	+0.3
4,607,679	-		GFF4612	0.12	+0.6
4,607,695	+		GFF4612	0.13	-0.4
4,607,697	+		GFF4612	0.14	+0.2
4,607,744	+		GFF4612	0.19	-0.2
4,607,779	+		GFF4612	0.23	-0.3
4,607,796	+		GFF4612	0.25	-1.7
4,607,797	+		GFF4612	0.25	-1.4
4,607,803	+		GFF4612	0.26	-0.6
4,607,804	-		GFF4612	0.26	-1.5
4,607,811	-		GFF4612	0.27	+1.0
4,607,833	+		GFF4612	0.29	-1.4
4,607,833	+		GFF4612	0.29	-0.0
4,607,833	+		GFF4612	0.29	+0.3
4,607,833	+		GFF4612	0.29	-1.6
4,607,841	-		GFF4612	0.30	+0.7
4,607,841	-		GFF4612	0.30	-1.8
4,607,841	-		GFF4612	0.30	-0.2
4,607,843	+		GFF4612	0.30	-0.7
4,607,843	+		GFF4612	0.30	-0.5
4,607,843	+		GFF4612	0.30	-1.1
4,607,843	+		GFF4612	0.30	-0.5
4,607,843	+		GFF4612	0.30	-1.0
4,607,843	+		GFF4612	0.30	-0.1
4,607,843	+		GFF4612	0.30	-0.4
4,607,848	-		GFF4612	0.31	+0.7
4,607,851	-		GFF4612	0.31	+0.7
4,607,851	-		GFF4612	0.31	-1.6
4,607,851	-		GFF4612	0.31	-0.3
4,607,851	-		GFF4612	0.31	-2.3
4,607,854	+		GFF4612	0.32	-0.5
4,607,854	+		GFF4612	0.32	-1.4
4,607,854	+		GFF4612	0.32	-0.4
4,607,854	+		GFF4612	0.32	-0.0
4,607,854	+		GFF4612	0.32	+0.0
4,607,854	+		GFF4612	0.32	-1.6
4,607,854	+		GFF4612	0.32	-0.1
4,607,854	+		GFF4612	0.32	-1.3
4,607,854	+		GFF4612	0.32	+0.3
4,607,854	+		GFF4612	0.32	-2.4
4,607,854	+		GFF4612	0.32	+0.1
4,607,854	+		GFF4612	0.32	-0.4
4,607,854	+		GFF4612	0.32	-1.2
4,607,854	+		GFF4612	0.32	-1.4
4,607,854	+		GFF4612	0.32	-0.6
4,607,854	+		GFF4612	0.32	-0.7
4,607,862	-		GFF4612	0.32	-2.4
4,607,862	-		GFF4612	0.32	-1.5
4,607,862	-		GFF4612	0.32	+1.1
4,607,862	-		GFF4612	0.32	+0.8
4,607,862	-		GFF4612	0.32	-0.7
4,607,862	-		GFF4612	0.32	-0.6
4,607,862	-		GFF4612	0.32	+0.1
4,607,864	+		GFF4612	0.33	-1.7
4,607,864	+		GFF4612	0.33	-0.8
4,607,864	+		GFF4612	0.33	+0.0
4,607,864	+		GFF4612	0.33	-0.3
4,607,866	-		GFF4612	0.33	-0.9
4,607,867	-		GFF4612	0.33	+0.9
4,607,870	+		GFF4612	0.33	+0.7
4,607,870	+		GFF4612	0.33	-1.9
4,607,872	-		GFF4612	0.34	-1.6
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4,608,384	-				-0.8
4,608,388	+				-1.0
4,608,388	+				+0.4
4,608,388	+				-0.1
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4,608,408	-				-0.9
4,608,458	+				+0.6
4,608,458	+				-0.0
4,608,466	-				-1.7
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