Strain Fitness in Sphingobium sp. HT1-2 around GFF4598

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,588,988	+		GFF4596	0.57	-1.1
4,589,004	-		GFF4596	0.59	+1.3
4,589,011	+		GFF4596	0.59	-1.2
4,589,011	+		GFF4596	0.59	-0.2
4,589,019	-		GFF4596	0.60	-0.1
4,589,021	+		GFF4596	0.60	+0.7
4,589,021	+		GFF4596	0.60	+0.1
4,589,026	+		GFF4596	0.61	-0.2
4,589,026	+		GFF4596	0.61	-0.9
4,589,053	+		GFF4596	0.63	-1.5
4,589,061	-		GFF4596	0.64	+1.3
4,589,093	+		GFF4596	0.66	-1.2
4,589,104	+		GFF4596	0.67	+1.3
4,589,106	+		GFF4596	0.68	+0.6
4,589,125	+		GFF4596	0.69	+0.6
4,589,160	+		GFF4596	0.72	+2.3
4,589,167	+		GFF4596	0.73	+1.0
4,589,168	-		GFF4596	0.73	-0.5
4,589,175	+		GFF4596	0.74	+0.8
4,589,175	+		GFF4596	0.74	+0.8
4,589,175	+		GFF4596	0.74	+0.6
4,589,183	-		GFF4596	0.74	-2.0
4,589,183	-		GFF4596	0.74	-1.2
4,589,183	-		GFF4596	0.74	+1.3
4,589,197	+		GFF4596	0.75	-2.2
4,589,205	-		GFF4596	0.76	+1.3
4,589,205	-		GFF4596	0.76	+0.3
4,589,245	+		GFF4596	0.80	-0.9
4,589,295	+		GFF4596	0.84	+0.0
4,589,368	+				-1.7
4,589,368	+				-1.9
4,589,378	+				-1.2
4,589,388	+				-0.6
4,589,388	+				-0.2
4,589,388	+				-0.5
4,589,388	+				-0.7
4,589,388	+				-1.2
4,589,388	+				+0.8
4,589,388	+				-2.6
4,589,388	+				+0.1
4,589,388	+				+1.0
4,589,388	+				-0.9
4,589,388	+				+0.2
4,589,396	-				-0.2
4,589,396	-				+0.6
4,589,396	-				+1.2
4,589,396	-				+0.6
4,589,396	-				-0.8
4,589,396	-				-0.2
4,589,396	-				-0.3
4,589,396	-				+0.9
4,589,396	-				-0.6
4,589,396	-				+0.5
4,589,396	-				-1.4
4,589,396	-				-0.5
4,589,425	+				-0.5
4,589,433	-				-1.2
4,589,443	+				+0.4
4,589,443	+				-0.7
4,589,451	-				-0.9
4,589,451	-				+0.1
4,589,451	-				-0.9
4,589,451	-				-1.7
4,589,484	-				-0.4
4,589,570	+		GFF4597	0.20	-0.2
4,589,602	+		GFF4597	0.28	+0.0
4,589,602	+		GFF4597	0.28	-0.4
4,589,602	+		GFF4597	0.28	+0.5
4,589,610	-		GFF4597	0.30	-1.5
4,589,610	-		GFF4597	0.30	+0.4
4,589,617	+		GFF4597	0.32	-1.6
4,589,617	+		GFF4597	0.32	+1.2
4,589,617	+		GFF4597	0.32	+0.4
4,589,617	+		GFF4597	0.32	+0.0
4,589,617	+		GFF4597	0.32	+0.4
4,589,619	+		GFF4597	0.32	+1.9
4,589,619	+		GFF4597	0.32	-0.2
4,589,625	-		GFF4597	0.34	-2.7
4,589,625	-		GFF4597	0.34	+0.0
4,589,625	-		GFF4597	0.34	+0.3
4,589,654	+		GFF4597	0.41	-2.1
4,589,662	-		GFF4597	0.43	-2.3
4,589,664	+		GFF4597	0.43	-0.3
4,589,664	+		GFF4597	0.43	-0.8
4,589,665	+		GFF4597	0.44	-0.3
4,589,677	-		GFF4597	0.47	+0.0
4,589,697	+		GFF4597	0.51	-1.0
4,589,721	-		GFF4597	0.57	+3.0
4,589,748	+		GFF4597	0.64	-0.4
4,589,749	-		GFF4597	0.64	-0.9
4,589,756	-		GFF4597	0.66	+1.3
4,589,762	-		GFF4597	0.67	-1.0
4,589,762	-		GFF4597	0.67	-1.0
4,589,770	+		GFF4597	0.69	+0.1
4,589,778	-		GFF4597	0.71	+1.1
4,589,844	+		GFF4597	0.88	-3.1
4,589,857	-				+2.1
4,589,861	+				-0.8
4,589,883	+				+1.6
4,589,883	+				-1.6
4,589,883	+				+1.3
4,589,883	+				+1.2
4,589,891	-				-1.1
4,589,896	-				-0.8
4,589,898	-				-1.9
4,589,905	-				-0.6
4,589,915	-				-0.2
4,589,949	-				-0.5
4,589,972	+				-0.4
4,589,980	+				+0.0
4,589,980	-				-0.7
4,589,980	-				+0.4
4,590,047	+		GFF4598	0.16	-0.2
4,590,047	+		GFF4598	0.16	+0.8
4,590,047	+		GFF4598	0.16	-0.0
4,590,047	+		GFF4598	0.16	+0.3
4,590,047	+		GFF4598	0.16	+0.2
4,590,047	+		GFF4598	0.16	-0.5
4,590,047	+		GFF4598	0.16	-0.9
4,590,047	+		GFF4598	0.16	-2.6
4,590,055	-		GFF4598	0.17	-1.2
4,590,055	-		GFF4598	0.17	-0.7
4,590,055	-		GFF4598	0.17	-0.5
4,590,055	-		GFF4598	0.17	+0.2
4,590,055	-		GFF4598	0.17	-0.1
4,590,055	-		GFF4598	0.17	-0.2
4,590,055	-		GFF4598	0.17	+0.2
4,590,055	-		GFF4598	0.17	+0.3
4,590,055	-		GFF4598	0.17	-0.2
4,590,055	-		GFF4598	0.17	-0.1
4,590,055	-		GFF4598	0.17	-1.1
4,590,055	-		GFF4598	0.17	-2.0
4,590,055	-		GFF4598	0.17	-1.3
4,590,055	-		GFF4598	0.17	+0.7
4,590,055	-		GFF4598	0.17	+0.6
4,590,057	+		GFF4598	0.17	+0.3
4,590,065	-		GFF4598	0.18	-1.0
4,590,074	+		GFF4598	0.19	-0.7
4,590,074	+		GFF4598	0.19	-0.3
4,590,074	+		GFF4598	0.19	+0.5
4,590,074	+		GFF4598	0.19	+0.3
4,590,074	+		GFF4598	0.19	-0.4
4,590,074	+		GFF4598	0.19	-0.7
4,590,082	-		GFF4598	0.20	-2.1
4,590,082	-		GFF4598	0.20	-0.5
4,590,082	-		GFF4598	0.20	-0.2
4,590,087	-		GFF4598	0.20	-0.4
4,590,128	+		GFF4598	0.25	+0.3
4,590,133	+		GFF4598	0.25	+0.1
4,590,133	+		GFF4598	0.25	-0.2
4,590,141	-		GFF4598	0.26	-0.5
4,590,141	-		GFF4598	0.26	+0.6
4,590,149	-		GFF4598	0.27	+0.3
4,590,154	-		GFF4598	0.28	+0.9
4,590,179	-		GFF4598	0.31	-0.9
4,590,179	-		GFF4598	0.31	-1.2
4,590,199	+		GFF4598	0.33	-0.2
4,590,202	+		GFF4598	0.33	+0.3
4,590,207	-		GFF4598	0.34	-2.2
4,590,228	-		GFF4598	0.36	-0.2
4,590,235	+		GFF4598	0.37	+0.2
4,590,235	+		GFF4598	0.37	+1.5
4,590,248	-		GFF4598	0.38	-0.6
4,590,248	-		GFF4598	0.38	+0.0
4,590,248	-		GFF4598	0.38	+0.8
4,590,253	-		GFF4598	0.39	-1.2
4,590,287	+		GFF4598	0.42	-1.2
4,590,295	-		GFF4598	0.43	-1.0
4,590,295	-		GFF4598	0.43	+0.5
4,590,295	-		GFF4598	0.43	-1.5
4,590,295	-		GFF4598	0.43	+1.0
4,590,333	-		GFF4598	0.47	-1.1
4,590,344	-		GFF4598	0.48	+1.3
4,590,348	+		GFF4598	0.49	+1.1
4,590,354	-		GFF4598	0.50	+1.2
4,590,429	-		GFF4598	0.58	-0.8
4,590,440	-		GFF4598	0.59	-0.8
4,590,445	-		GFF4598	0.59	-1.2
4,590,455	-		GFF4598	0.61	+0.5
4,590,462	-		GFF4598	0.61	-0.1
4,590,462	-		GFF4598	0.61	+0.4
4,590,481	+		GFF4598	0.63	+0.5
4,590,481	+		GFF4598	0.63	+0.3
4,590,497	-		GFF4598	0.65	-1.7
4,590,533	-		GFF4598	0.69	-0.5
4,590,533	-		GFF4598	0.69	-1.2
4,590,569	+		GFF4598	0.73	-1.7
4,590,569	+		GFF4598	0.73	-1.1
4,590,575	-		GFF4598	0.74	-1.0
4,590,578	+		GFF4598	0.74	-0.1
4,590,583	+		GFF4598	0.75	+0.9
4,590,594	+		GFF4598	0.76	-2.0
4,590,651	+		GFF4598	0.82	-0.5
4,590,680	+		GFF4598	0.85	-0.5
4,590,721	-		GFF4598	0.90	+1.4
4,590,742	-				-0.6
4,590,745	-				-1.4
4,590,760	+				-1.6
4,590,784	+				+0.9
4,590,784	+				+0.3
4,590,857	-				-0.1
4,590,867	+				-2.0
4,590,903	+				-0.4
4,590,926	+				-1.7
4,590,946	+				-0.3
4,590,946	+				+1.2
4,590,959	+				-0.3
4,590,960	-				-1.0
4,591,019	+				+1.3
4,591,019	+				+0.4
4,591,027	-		GFF4599	0.10	-2.2
4,591,027	-		GFF4599	0.10	-1.1
4,591,035	+		GFF4599	0.11	-1.0
4,591,055	-		GFF4599	0.12	-1.7
4,591,080	-		GFF4599	0.14	-0.2
4,591,080	-		GFF4599	0.14	-0.2
4,591,088	+		GFF4599	0.15	-1.6
4,591,092	-		GFF4599	0.15	+0.8
4,591,121	+		GFF4599	0.18	-0.1
4,591,130	-		GFF4599	0.19	+0.7
4,591,141	+		GFF4599	0.19	-0.2
4,591,145	+		GFF4599	0.20	-2.4
4,591,145	+		GFF4599	0.20	+0.3
4,591,153	-		GFF4599	0.20	-1.5
4,591,153	-		GFF4599	0.20	+0.5
4,591,174	+		GFF4599	0.22	+1.6
4,591,181	+		GFF4599	0.23	+1.3
4,591,189	-		GFF4599	0.23	-2.3
4,591,201	+		GFF4599	0.24	+0.0
4,591,206	+		GFF4599	0.25	+2.0
4,591,209	-		GFF4599	0.25	+1.6
4,591,209	-		GFF4599	0.25	+0.2
4,591,224	+		GFF4599	0.26	+0.3
4,591,224	+		GFF4599	0.26	-0.5
4,591,231	+		GFF4599	0.27	-2.0
4,591,231	+		GFF4599	0.27	-1.3
4,591,231	+		GFF4599	0.27	-1.1
4,591,231	+		GFF4599	0.27	+0.7
4,591,239	-		GFF4599	0.27	-1.1
4,591,275	-		GFF4599	0.30	+0.1
4,591,283	+		GFF4599	0.31	+1.0
4,591,323	-		GFF4599	0.34	-0.2
4,591,323	-		GFF4599	0.34	+0.5
4,591,323	-		GFF4599	0.34	-1.7
4,591,323	-		GFF4599	0.34	-0.2
4,591,323	-		GFF4599	0.34	-0.0
4,591,328	-		GFF4599	0.34	-0.9
4,591,364	+		GFF4599	0.37	-0.6
4,591,372	-		GFF4599	0.38	+1.2
4,591,382	-		GFF4599	0.39	-0.4
4,591,409	+		GFF4599	0.41	+0.1
4,591,409	+		GFF4599	0.41	+0.9
4,591,409	+		GFF4599	0.41	-0.9
4,591,417	-		GFF4599	0.42	-0.8
4,591,417	-		GFF4599	0.42	+1.0
4,591,434	-		GFF4599	0.43	-0.2
4,591,447	+		GFF4599	0.44	+0.1
4,591,455	-		GFF4599	0.45	+0.0
4,591,490	+		GFF4599	0.48	-2.2
4,591,496	+		GFF4599	0.48	-0.6
4,591,498	-		GFF4599	0.48	-0.6
4,591,541	-		GFF4599	0.52	-2.0
4,591,546	-		GFF4599	0.52	+0.3
4,591,576	+		GFF4599	0.54	+1.5
4,591,603	-		GFF4599	0.57	-1.3
4,591,628	+		GFF4599	0.59	+0.3
4,591,657	-		GFF4599	0.61	+1.3
4,591,662	-		GFF4599	0.61	-0.4
4,591,680	-		GFF4599	0.63	-1.1
4,591,689	+		GFF4599	0.64	-0.3
4,591,690	+		GFF4599	0.64	-0.5
4,591,695	-		GFF4599	0.64	-0.6
4,591,697	-		GFF4599	0.64	+0.9
4,591,724	-		GFF4599	0.66	-0.2
4,591,737	-		GFF4599	0.67	-1.3
4,591,747	-		GFF4599	0.68	+0.0
4,591,747	-		GFF4599	0.68	-0.5
4,591,763	+		GFF4599	0.69	-0.2
4,591,770	+		GFF4599	0.70	+0.6
4,591,771	-		GFF4599	0.70	-0.9