Strain Fitness in Sphingobium sp. HT1-2 around GFF4594

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,586,870	+		GFF4593	0.54	+0.9
4,586,870	-		GFF4593	0.54	-0.9
4,586,903	+		GFF4593	0.57	+0.8
4,586,903	+		GFF4593	0.57	-1.7
4,586,904	-		GFF4593	0.57	-1.4
4,586,911	-		GFF4593	0.57	-0.3
4,586,919	+		GFF4593	0.58	-0.5
4,586,921	-		GFF4593	0.58	-1.9
4,586,945	+		GFF4593	0.60	-1.7
4,586,955	+		GFF4593	0.61	-0.4
4,586,955	+		GFF4593	0.61	+0.5
4,586,963	-		GFF4593	0.61	-0.7
4,586,986	+		GFF4593	0.63	+0.3
4,587,011	-		GFF4593	0.65	+0.2
4,587,014	-		GFF4593	0.65	-0.4
4,587,036	+		GFF4593	0.67	+0.5
4,587,080	+		GFF4593	0.71	-1.8
4,587,087	-		GFF4593	0.71	-1.3
4,587,088	-		GFF4593	0.71	+0.2
4,587,095	+		GFF4593	0.72	-0.8
4,587,095	+		GFF4593	0.72	-2.1
4,587,095	+		GFF4593	0.72	-1.9
4,587,095	+		GFF4593	0.72	-0.2
4,587,103	-		GFF4593	0.72	-1.2
4,587,103	-		GFF4593	0.72	-1.7
4,587,113	-		GFF4593	0.73	-2.8
4,587,115	-		GFF4593	0.73	-0.9
4,587,127	+		GFF4593	0.74	-0.3
4,587,164	+		GFF4593	0.77	-0.1
4,587,164	+		GFF4593	0.77	-0.1
4,587,172	-		GFF4593	0.78	+0.7
4,587,172	-		GFF4593	0.78	+0.3
4,587,178	+		GFF4593	0.78	-1.6
4,587,220	+		GFF4593	0.81	+0.2
4,587,237	+		GFF4593	0.83	-0.8
4,587,237	+		GFF4593	0.83	-0.7
4,587,250	-		GFF4593	0.84	-1.0
4,587,252	+		GFF4593	0.84	-1.3
4,587,260	-		GFF4593	0.85	-1.0
4,587,265	-		GFF4593	0.85	+0.8
4,587,299	+		GFF4593	0.88	-1.8
4,587,307	-		GFF4593	0.88	-0.3
4,587,309	+		GFF4593	0.88	-0.8
4,587,316	+		GFF4593	0.89	-1.0
4,587,317	-		GFF4593	0.89	-0.5
4,587,318	+		GFF4593	0.89	+0.4
4,587,323	+		GFF4593	0.90	+0.2
4,587,346	+				-0.3
4,587,351	+				-1.3
4,587,351	+				+0.7
4,587,351	+				-1.8
4,587,351	+				+0.2
4,587,351	+				-1.1
4,587,352	+				-0.9
4,587,352	+				-1.2
4,587,354	-				-0.7
4,587,354	-				-0.8
4,587,359	-				-1.3
4,587,359	-				+0.9
4,587,359	-				-0.7
4,587,359	-				+0.8
4,587,379	-				-0.6
4,587,381	-				-2.2
4,587,381	-				-1.4
4,587,381	-				-2.0
4,587,381	-				+0.2
4,587,381	-				-1.6
4,587,392	-				-0.4
4,587,398	+				-0.5
4,587,399	+				-1.4
4,587,399	+				+1.0
4,587,407	-				-1.6
4,587,424	-				-1.3
4,587,449	+				+0.4
4,587,449	+				+0.8
4,587,451	+				+0.4
4,587,459	+				+0.2
4,587,508	-				-1.6
4,587,529	+				-0.1
4,587,530	+				-0.3
4,587,545	+				-1.4
4,587,545	+				-0.3
4,587,553	-				-1.0
4,587,558	-				+0.8
4,587,558	-				-1.0
4,587,560	+				-1.0
4,587,562	+				-1.0
4,587,562	+				-0.2
4,587,562	+				-0.2
4,587,568	-				-2.8
4,587,570	+				-0.3
4,587,570	-				-0.2
4,587,570	-				+0.2
4,587,570	-				+0.4
4,587,597	+				-1.9
4,587,597	+				+0.2
4,587,597	+				+0.4
4,587,597	+				-0.2
4,587,597	+				-1.9
4,587,597	+				-0.5
4,587,605	-				+1.2
4,587,605	-				-1.1
4,587,605	-				-0.0
4,587,605	-				+0.7
4,587,619	+				-0.8
4,587,619	+				-0.7
4,587,627	-				-1.3
4,587,628	-				-0.5
4,587,639	+				+1.1
4,587,639	+				-0.2
4,587,649	+				+0.6
4,587,657	-				-1.3
4,587,701	+				-0.4
4,587,701	+				-1.3
4,587,701	+				+0.5
4,587,701	+				-0.4
4,587,701	+				+0.8
4,587,701	+				-1.2
4,587,701	+				-0.3
4,587,709	-				-1.6
4,587,756	+				-0.6
4,587,771	+				-1.4
4,587,771	+				-0.6
4,587,771	+				+0.1
4,587,778	+				+0.2
4,587,779	-				-0.3
4,587,779	-				-0.6
4,587,779	-				-0.6
4,587,791	-				+0.8
4,587,797	+				-2.1
4,587,823	-				-0.2
4,587,856	-				+0.9
4,587,858	-				-1.3
4,587,877	-		GFF4594	0.14	-0.7
4,587,877	-		GFF4594	0.14	-1.5
4,588,163	-		GFF4595	0.56	-1.6
4,588,171	+		GFF4595	0.58	+0.1
4,588,197	-		GFF4595	0.67	-0.5
4,588,207	-		GFF4595	0.70	-1.1
4,588,209	+		GFF4595	0.71	-1.2
4,588,242	+		GFF4595	0.82	-0.8
4,588,242	+		GFF4595	0.82	+0.2
4,588,242	+		GFF4595	0.82	-3.6
4,588,244	-		GFF4595	0.82	-0.1
4,588,250	-		GFF4595	0.84	-2.7
4,588,250	-		GFF4595	0.84	+1.2
4,588,256	+		GFF4595	0.86	-0.9
4,588,264	-		GFF4595	0.89	+0.3
4,588,266	-		GFF4595	0.90	-1.8
4,588,315	-				+0.2
4,588,323	-				-0.5
4,588,324	+				-1.5
4,588,331	-				-2.1
4,588,340	-				+0.4
4,588,347	+				-1.0
4,588,380	-				-1.5
4,588,409	+				+0.5
4,588,418	+				-0.7
4,588,418	+				-0.0
4,588,419	+				-0.3
4,588,419	+				-0.9
4,588,419	+				-0.1
4,588,419	+				-0.5
4,588,419	+				-0.7
4,588,419	+				-0.4
4,588,419	+				-0.6
4,588,419	+				-0.2
4,588,419	+				-0.4
4,588,419	+				-0.2
4,588,419	+				+0.9
4,588,419	+				-1.9
4,588,426	-				-0.7
4,588,426	-				-1.6
4,588,426	-				+0.3
4,588,426	-				-0.4
4,588,427	-				-0.8
4,588,427	-				-1.9
4,588,427	-				+0.0
4,588,427	-				-1.7
4,588,427	-				+0.2
4,588,453	+		GFF4596	0.12	+0.2
4,588,454	-		GFF4596	0.12	-1.3
4,588,470	-		GFF4596	0.13	-2.0
4,588,472	+		GFF4596	0.13	+0.4
4,588,472	+		GFF4596	0.13	-0.4
4,588,480	-		GFF4596	0.14	-0.8
4,588,526	+		GFF4596	0.18	-0.3
4,588,534	-		GFF4596	0.18	+0.2
4,588,534	-		GFF4596	0.18	-2.2
4,588,534	-		GFF4596	0.18	-0.6
4,588,548	+		GFF4596	0.20	-1.3
4,588,548	+		GFF4596	0.20	-1.2
4,588,548	+		GFF4596	0.20	-2.6
4,588,548	+		GFF4596	0.20	+0.3
4,588,548	+		GFF4596	0.20	-0.4
4,588,548	+		GFF4596	0.20	-0.2
4,588,548	+		GFF4596	0.20	-0.3
4,588,548	+		GFF4596	0.20	-1.4
4,588,548	+		GFF4596	0.20	-1.4
4,588,548	+		GFF4596	0.20	+0.7
4,588,548	+		GFF4596	0.20	-0.4
4,588,548	+		GFF4596	0.20	-0.9
4,588,548	+		GFF4596	0.20	-0.8
4,588,548	+		GFF4596	0.20	+1.1
4,588,548	+		GFF4596	0.20	+0.1
4,588,548	+		GFF4596	0.20	+1.0
4,588,548	+		GFF4596	0.20	-2.6
4,588,548	+		GFF4596	0.20	-1.0
4,588,548	+		GFF4596	0.20	+0.2
4,588,548	+		GFF4596	0.20	+0.7
4,588,548	+		GFF4596	0.20	+0.3
4,588,548	+		GFF4596	0.20	+0.2
4,588,548	+		GFF4596	0.20	+0.3
4,588,548	+		GFF4596	0.20	-1.5
4,588,548	+		GFF4596	0.20	-0.1
4,588,548	+		GFF4596	0.20	+0.5
4,588,548	+		GFF4596	0.20	+0.2
4,588,548	+		GFF4596	0.20	-1.4
4,588,548	+		GFF4596	0.20	-2.4
4,588,548	+		GFF4596	0.20	-2.5
4,588,556	-		GFF4596	0.20	+0.4
4,588,556	-		GFF4596	0.20	-0.1
4,588,556	-		GFF4596	0.20	+0.6
4,588,556	-		GFF4596	0.20	+0.5
4,588,556	-		GFF4596	0.20	+0.2
4,588,556	-		GFF4596	0.20	-1.4
4,588,556	-		GFF4596	0.20	+0.8
4,588,556	-		GFF4596	0.20	-0.9
4,588,556	-		GFF4596	0.20	+0.7
4,588,556	-		GFF4596	0.20	-0.9
4,588,556	-		GFF4596	0.20	-0.2
4,588,556	-		GFF4596	0.20	-1.5
4,588,556	-		GFF4596	0.20	-1.0
4,588,556	-		GFF4596	0.20	+0.4
4,588,556	-		GFF4596	0.20	+0.2
4,588,556	-		GFF4596	0.20	-0.4
4,588,556	-		GFF4596	0.20	-0.5
4,588,556	-		GFF4596	0.20	-0.9
4,588,556	-		GFF4596	0.20	-0.4
4,588,556	-		GFF4596	0.20	-0.3
4,588,556	-		GFF4596	0.20	-1.0
4,588,556	-		GFF4596	0.20	-0.9
4,588,556	-		GFF4596	0.20	-0.3
4,588,556	-		GFF4596	0.20	-2.4
4,588,556	-		GFF4596	0.20	+0.9
4,588,556	-		GFF4596	0.20	-0.9
4,588,556	-		GFF4596	0.20	-0.9
4,588,556	-		GFF4596	0.20	-1.5
4,588,600	+		GFF4596	0.24	-1.4
4,588,600	+		GFF4596	0.24	-0.8
4,588,604	-		GFF4596	0.24	-0.0
4,588,611	+		GFF4596	0.25	-2.7
4,588,616	+		GFF4596	0.26	-0.1
4,588,616	+		GFF4596	0.26	+0.9
4,588,618	+		GFF4596	0.26	-1.4
4,588,619	-		GFF4596	0.26	-1.7
4,588,633	+		GFF4596	0.27	+0.1
4,588,633	+		GFF4596	0.27	-0.5
4,588,641	-		GFF4596	0.28	-0.0
4,588,641	-		GFF4596	0.28	-0.3
4,588,641	-		GFF4596	0.28	-1.7
4,588,641	-		GFF4596	0.28	+1.2
4,588,641	-		GFF4596	0.28	-1.7
4,588,678	+		GFF4596	0.31	+0.3
4,588,678	+		GFF4596	0.31	+0.7
4,588,686	-		GFF4596	0.32	+0.6
4,588,711	+		GFF4596	0.34	-0.8
4,588,711	+		GFF4596	0.34	-1.4
4,588,726	+		GFF4596	0.35	+0.5
4,588,731	+		GFF4596	0.35	-1.2
4,588,734	-		GFF4596	0.36	-1.3
4,588,739	+		GFF4596	0.36	-1.5
4,588,767	+		GFF4596	0.38	-0.8
4,588,775	-		GFF4596	0.39	-2.6
4,588,775	-		GFF4596	0.39	-1.3
4,588,810	-		GFF4596	0.42	+0.1
4,588,812	+		GFF4596	0.42	-0.7
4,588,820	+		GFF4596	0.43	-0.3
4,588,820	-		GFF4596	0.43	-0.9
4,588,871	+		GFF4596	0.47	+0.4
4,588,915	+		GFF4596	0.51	-0.0