Strain Fitness in Sphingobium sp. HT1-2 around GFF4571

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,561,078	-		GFF4568	0.74	-0.7
4,561,080	+		GFF4568	0.74	-1.3
4,561,080	+		GFF4568	0.74	-0.0
4,561,080	+		GFF4568	0.74	-2.1
4,561,080	+		GFF4568	0.74	-0.1
4,561,098	-		GFF4568	0.76	-3.0
4,561,101	-		GFF4568	0.76	+0.6
4,561,108	+		GFF4568	0.76	-0.2
4,561,133	+		GFF4568	0.78	-1.4
4,561,148	-		GFF4568	0.80	-0.7
4,561,171	+		GFF4568	0.81	+0.0
4,561,171	+		GFF4568	0.81	+0.1
4,561,171	+		GFF4568	0.81	+0.3
4,561,179	-		GFF4568	0.82	-0.6
4,561,185	+		GFF4568	0.83	-2.1
4,561,185	+		GFF4568	0.83	+0.6
4,561,185	+		GFF4568	0.83	+0.5
4,561,193	-		GFF4568	0.83	-0.5
4,561,193	-		GFF4568	0.83	-0.1
4,561,193	-		GFF4568	0.83	-0.1
4,561,193	-		GFF4568	0.83	-0.3
4,561,195	+		GFF4568	0.83	+0.6
4,561,205	+		GFF4568	0.84	-0.0
4,561,205	+		GFF4568	0.84	+0.9
4,561,212	+		GFF4568	0.85	-1.2
4,561,213	-		GFF4568	0.85	+0.8
4,561,222	+		GFF4568	0.86	-0.2
4,561,225	-		GFF4568	0.86	-0.3
4,561,230	-		GFF4568	0.86	-1.3
4,561,240	-		GFF4568	0.87	+0.1
4,561,241	-		GFF4568	0.87	-1.6
4,561,269	+		GFF4568	0.90	-0.3
4,561,288	-				-1.6
4,561,307	+				+0.1
4,561,307	+				+0.0
4,561,307	+				+0.3
4,561,307	+				+0.4
4,561,307	+				+0.0
4,561,307	+				-1.2
4,561,307	+				+0.3
4,561,307	+				+0.5
4,561,307	+				-0.6
4,561,311	-				+0.3
4,561,312	+				-0.1
4,561,315	-				-1.1
4,561,315	-				-0.5
4,561,317	+				+0.4
4,561,317	+				-2.8
4,561,317	+				-2.1
4,561,317	+				-1.4
4,561,317	+				-1.6
4,561,317	+				+0.1
4,561,325	-				-1.7
4,561,325	-				-1.4
4,561,325	-				-2.6
4,561,325	-				-0.1
4,561,335	-				-1.8
4,561,344	-				+0.9
4,561,353	-				-1.5
4,561,367	+				-1.7
4,561,390	+				-1.3
4,561,398	-				-1.2
4,561,429	+				-2.1
4,561,446	+				-0.5
4,561,454	-				+0.1
4,561,455	+				+0.2
4,561,457	+				+1.6
4,561,457	+				-0.6
4,561,457	+				-0.4
4,561,465	+		GFF4569	0.11	-2.1
4,561,465	-		GFF4569	0.11	-0.4
4,561,468	-		GFF4569	0.12	+1.1
4,561,473	-		GFF4569	0.13	+0.2
4,561,495	-		GFF4569	0.17	+0.8
4,561,499	+		GFF4569	0.18	-0.9
4,561,499	+		GFF4569	0.18	-1.5
4,561,500	-		GFF4569	0.18	-0.2
4,561,504	-		GFF4569	0.19	-0.0
4,561,507	-		GFF4569	0.20	+0.7
4,561,507	-		GFF4569	0.20	-2.0
4,561,551	+		GFF4569	0.28	-0.7
4,561,572	+		GFF4569	0.33	-0.1
4,561,572	+		GFF4569	0.33	+0.9
4,561,577	+		GFF4569	0.34	+0.3
4,561,579	+		GFF4569	0.34	+0.5
4,561,580	-		GFF4569	0.34	-1.6
4,561,580	-		GFF4569	0.34	-0.3
4,561,582	+		GFF4569	0.35	-0.6
4,561,582	+		GFF4569	0.35	+0.6
4,561,587	+		GFF4569	0.36	-2.2
4,561,590	-		GFF4569	0.36	-0.1
4,561,596	+		GFF4569	0.38	-0.1
4,561,596	+		GFF4569	0.38	-1.5
4,561,598	+		GFF4569	0.38	-0.8
4,561,598	+		GFF4569	0.38	-0.7
4,561,603	+		GFF4569	0.39	+0.2
4,561,606	-		GFF4569	0.40	-1.2
4,561,646	+		GFF4569	0.48	-1.2
4,561,646	+		GFF4569	0.48	-0.2
4,561,646	+		GFF4569	0.48	-0.5
4,561,654	-		GFF4569	0.49	-1.4
4,561,661	+		GFF4569	0.51	-1.2
4,561,661	+		GFF4569	0.51	+0.8
4,561,661	+		GFF4569	0.51	-0.9
4,561,661	+		GFF4569	0.51	+0.1
4,561,661	+		GFF4569	0.51	-0.8
4,561,661	+		GFF4569	0.51	+0.4
4,561,661	+		GFF4569	0.51	+1.0
4,561,661	+		GFF4569	0.51	+0.1
4,561,661	+		GFF4569	0.51	-1.8
4,561,661	+		GFF4569	0.51	-0.6
4,561,661	+		GFF4569	0.51	+0.0
4,561,668	+		GFF4569	0.52	+0.8
4,561,669	+		GFF4569	0.52	-1.9
4,561,669	-		GFF4569	0.52	-1.4
4,561,669	-		GFF4569	0.52	-1.0
4,561,669	-		GFF4569	0.52	+0.0
4,561,675	-		GFF4569	0.54	-0.5
4,561,676	-		GFF4569	0.54	-1.5
4,561,676	-		GFF4569	0.54	-0.0
4,561,683	+		GFF4569	0.55	-0.3
4,561,711	-		GFF4569	0.61	-0.6
4,561,774	-		GFF4569	0.74	+0.0
4,561,774	-		GFF4569	0.74	-0.3
4,561,775	+		GFF4569	0.74	-0.6
4,561,785	+		GFF4569	0.76	-0.1
4,561,788	-		GFF4569	0.77	-0.3
4,561,804	-		GFF4569	0.80	+0.1
4,561,809	-		GFF4569	0.81	-1.0
4,561,822	+		GFF4569	0.84	-3.0
4,561,863	+				+0.7
4,561,864	+				-1.4
4,561,871	+				-1.6
4,561,872	-				-0.2
4,561,876	+				+0.0
4,561,879	-				+0.6
4,561,881	+				-2.0
4,561,889	-				-1.4
4,561,947	+		GFF4570	0.27	-0.8
4,561,947	+		GFF4570	0.27	-0.8
4,561,950	-		GFF4570	0.29	-1.3
4,561,952	+		GFF4570	0.30	+0.1
4,561,952	+		GFF4570	0.30	-2.1
4,561,954	+		GFF4570	0.31	-0.4
4,561,985	+		GFF4570	0.49	-1.6
4,561,991	+		GFF4570	0.52	+0.5
4,562,007	+		GFF4570	0.61	-0.4
4,562,022	-		GFF4570	0.69	-2.4
4,562,027	-		GFF4570	0.72	+0.4
4,562,050	-		GFF4570	0.85	-0.1
4,562,081	-				+0.2
4,564,246	-				+0.5
4,564,247	-				+0.6
4,564,247	-				+0.1
4,564,249	+				-1.3
4,564,257	-				-0.3
4,564,257	-				-1.5
4,564,257	-				+0.3
4,564,257	-				-1.6
4,564,258	-				-1.1
4,564,295	-				+0.7
4,564,326	+				-0.9
4,564,334	-				+0.5
4,564,334	-				+0.6
4,564,334	-				-0.2
4,564,356	+		GFF4572	0.11	-1.6
4,564,361	+		GFF4572	0.12	-1.0
4,564,364	-		GFF4572	0.13	-2.0
4,564,364	-		GFF4572	0.13	+0.9
4,564,366	+		GFF4572	0.13	-0.2
4,564,374	-		GFF4572	0.14	+0.3
4,564,374	-		GFF4572	0.14	+0.5
4,564,384	-		GFF4572	0.16	-1.6
4,564,439	-		GFF4572	0.24	+0.8
4,564,441	+		GFF4572	0.24	-0.5
4,564,441	+		GFF4572	0.24	-0.1
4,564,441	+		GFF4572	0.24	-0.7
4,564,441	+		GFF4572	0.24	-3.3
4,564,441	+		GFF4572	0.24	-1.2
4,564,441	+		GFF4572	0.24	-3.0
4,564,441	+		GFF4572	0.24	-0.4
4,564,441	+		GFF4572	0.24	+0.0
4,564,441	+		GFF4572	0.24	-0.2
4,564,441	+		GFF4572	0.24	-0.6
4,564,441	+		GFF4572	0.24	+1.0
4,564,441	+		GFF4572	0.24	-0.3
4,564,441	+		GFF4572	0.24	+1.2
4,564,441	+		GFF4572	0.24	-0.8
4,564,441	+		GFF4572	0.24	-0.4
4,564,441	+		GFF4572	0.24	-0.6
4,564,441	+		GFF4572	0.24	-0.1
4,564,446	+		GFF4572	0.25	-0.6
4,564,449	-		GFF4572	0.26	-0.1
4,564,449	-		GFF4572	0.26	-0.7
4,564,449	-		GFF4572	0.26	+0.3
4,564,449	-		GFF4572	0.26	+0.2
4,564,449	-		GFF4572	0.26	-1.1
4,564,449	-		GFF4572	0.26	+0.1
4,564,449	-		GFF4572	0.26	-0.9
4,564,449	-		GFF4572	0.26	-0.6
4,564,449	-		GFF4572	0.26	+1.4
4,564,449	-		GFF4572	0.26	+0.0
4,564,449	-		GFF4572	0.26	-0.6
4,564,449	-		GFF4572	0.26	+0.2
4,564,449	-		GFF4572	0.26	+0.0
4,564,449	-		GFF4572	0.26	-0.6
4,564,449	-		GFF4572	0.26	+0.6
4,564,449	-		GFF4572	0.26	+0.5
4,564,449	-		GFF4572	0.26	+0.3
4,564,449	-		GFF4572	0.26	+0.4
4,564,449	-		GFF4572	0.26	+0.3
4,564,452	+		GFF4572	0.26	-0.6
4,564,452	+		GFF4572	0.26	-0.5
4,564,454	-		GFF4572	0.26	-1.6
4,564,457	+		GFF4572	0.27	+0.9
4,564,457	+		GFF4572	0.27	-1.3
4,564,459	+		GFF4572	0.27	-0.6
4,564,459	-		GFF4572	0.27	-0.1
4,564,460	-		GFF4572	0.27	-1.9
4,564,460	-		GFF4572	0.27	-0.4
4,564,460	-		GFF4572	0.27	+0.2
4,564,465	-		GFF4572	0.28	+0.2
4,564,467	+		GFF4572	0.28	-1.6
4,564,467	-		GFF4572	0.28	+0.1
4,564,489	+		GFF4572	0.32	+0.6
4,564,489	+		GFF4572	0.32	-1.4
4,564,489	+		GFF4572	0.32	-0.6
4,564,489	+		GFF4572	0.32	+0.1
4,564,489	+		GFF4572	0.32	-1.9
4,564,489	+		GFF4572	0.32	-0.1
4,564,489	+		GFF4572	0.32	-0.5
4,564,489	+		GFF4572	0.32	-0.4
4,564,489	+		GFF4572	0.32	-0.8
4,564,489	+		GFF4572	0.32	-1.6
4,564,489	+		GFF4572	0.32	+0.3
4,564,489	+		GFF4572	0.32	-1.4
4,564,489	+		GFF4572	0.32	-1.7
4,564,489	+		GFF4572	0.32	+0.4
4,564,489	+		GFF4572	0.32	-2.2
4,564,489	+		GFF4572	0.32	-0.7
4,564,489	+		GFF4572	0.32	+0.2
4,564,489	+		GFF4572	0.32	+0.7
4,564,489	+		GFF4572	0.32	-1.2
4,564,489	+		GFF4572	0.32	-1.9
4,564,489	+		GFF4572	0.32	-1.6
4,564,489	+		GFF4572	0.32	+0.3
4,564,489	+		GFF4572	0.32	-2.5
4,564,489	+		GFF4572	0.32	+0.9
4,564,489	+		GFF4572	0.32	-0.4
4,564,489	+		GFF4572	0.32	+0.1
4,564,497	-		GFF4572	0.33	-0.5
4,564,497	-		GFF4572	0.33	-0.4
4,564,497	-		GFF4572	0.33	+0.2
4,564,497	-		GFF4572	0.33	+0.2
4,564,497	-		GFF4572	0.33	+1.0
4,564,497	-		GFF4572	0.33	-0.7
4,564,497	-		GFF4572	0.33	-1.8
4,564,497	-		GFF4572	0.33	-0.2
4,564,497	-		GFF4572	0.33	-1.4
4,564,497	-		GFF4572	0.33	-2.6
4,564,497	-		GFF4572	0.33	+0.1
4,564,497	-		GFF4572	0.33	-0.0
4,564,497	-		GFF4572	0.33	+1.2
4,564,497	-		GFF4572	0.33	-1.8
4,564,497	-		GFF4572	0.33	+0.7
4,564,497	-		GFF4572	0.33	+0.8
4,564,497	-		GFF4572	0.33	+0.8
4,564,497	-		GFF4572	0.33	-0.4
4,564,497	-		GFF4572	0.33	-0.1
4,564,497	-		GFF4572	0.33	+0.8
4,564,497	-		GFF4572	0.33	+0.8
4,564,497	-		GFF4572	0.33	-0.5
4,564,497	-		GFF4572	0.33	+0.7
4,564,497	-		GFF4572	0.33	-0.1
4,564,497	-		GFF4572	0.33	-1.2
4,564,529	-		GFF4572	0.38	-1.3
4,564,536	+		GFF4572	0.39	+0.8
4,564,536	+		GFF4572	0.39	-2.7
4,564,536	+		GFF4572	0.39	+0.1
4,564,536	+		GFF4572	0.39	-1.4
4,564,544	-		GFF4572	0.40	-0.0
4,564,544	-		GFF4572	0.40	-0.0
4,564,544	-		GFF4572	0.40	-1.2
4,564,544	-		GFF4572	0.40	-0.9
4,564,544	-		GFF4572	0.40	-0.4
4,564,544	-		GFF4572	0.40	+0.5
4,564,544	-		GFF4572	0.40	+0.3
4,564,552	+		GFF4572	0.41	-2.3
4,564,552	+		GFF4572	0.41	-0.3
4,564,558	+		GFF4572	0.42	-1.8
4,564,559	-		GFF4572	0.43	-1.8
4,564,567	-		GFF4572	0.44	-0.6
4,564,580	+		GFF4572	0.46	+0.3
4,564,580	+		GFF4572	0.46	+0.5
4,564,580	+		GFF4572	0.46	-1.2
4,564,580	+		GFF4572	0.46	-1.6
4,564,580	+		GFF4572	0.46	-1.4
4,564,580	+		GFF4572	0.46	-1.3
4,564,580	+		GFF4572	0.46	-1.7
4,564,588	-		GFF4572	0.47	+1.7
4,564,588	-		GFF4572	0.47	+0.5
4,564,588	-		GFF4572	0.47	+1.2
4,564,588	-		GFF4572	0.47	-0.5
4,564,588	-		GFF4572	0.47	-0.4
4,564,588	-		GFF4572	0.47	-0.6
4,564,588	-		GFF4572	0.47	-1.4
4,564,588	-		GFF4572	0.47	+0.2
4,564,590	+		GFF4572	0.47	-1.5
4,564,590	+		GFF4572	0.47	-0.4
4,564,590	+		GFF4572	0.47	-2.3
4,564,590	+		GFF4572	0.47	-1.2
4,564,590	+		GFF4572	0.47	-0.1
4,564,590	+		GFF4572	0.47	-2.2
4,564,598	-		GFF4572	0.49	-0.2
4,564,598	-		GFF4572	0.49	-1.3
4,564,598	-		GFF4572	0.49	-0.8
4,564,598	-		GFF4572	0.49	+0.2
4,564,598	-		GFF4572	0.49	-0.3
4,564,598	-		GFF4572	0.49	+0.2
4,564,598	-		GFF4572	0.49	-0.8
4,564,598	-		GFF4572	0.49	-0.2
4,564,598	-		GFF4572	0.49	-2.1
4,564,606	+		GFF4572	0.50	-0.8
4,564,606	+		GFF4572	0.50	-1.4
4,564,606	+		GFF4572	0.50	-0.2
4,564,606	+		GFF4572	0.50	-0.6
4,564,606	+		GFF4572	0.50	+0.3
4,564,609	+		GFF4572	0.50	-0.1
4,564,614	-		GFF4572	0.51	+0.3
4,564,617	-		GFF4572	0.51	-0.7
4,564,619	-		GFF4572	0.52	+0.7
4,564,624	-		GFF4572	0.53	-1.4
4,564,668	+		GFF4572	0.59	+0.2
4,564,670	-		GFF4572	0.60	+0.2
4,564,672	+		GFF4572	0.60	+0.6
4,564,693	+		GFF4572	0.63	-0.6
4,564,698	+		GFF4572	0.64	-2.0
4,564,701	-		GFF4572	0.64	-0.3
4,564,704	-		GFF4572	0.65	-0.2
4,564,704	-		GFF4572	0.65	-1.8
4,564,706	-		GFF4572	0.65	-2.4
4,564,722	+		GFF4572	0.68	+0.6
4,564,722	+		GFF4572	0.68	-2.2
4,564,722	+		GFF4572	0.68	-0.5
4,564,722	+		GFF4572	0.68	-0.1
4,564,723	+		GFF4572	0.68	+0.2
4,564,723	+		GFF4572	0.68	-0.7
4,564,728	+		GFF4572	0.69	+0.2
4,564,730	-		GFF4572	0.69	+0.1
4,564,730	-		GFF4572	0.69	-0.8
4,564,730	-		GFF4572	0.69	-0.9
4,564,751	-		GFF4572	0.72	-2.0
4,564,801	+		GFF4572	0.80	-2.9
4,564,831	+		GFF4572	0.84	-0.6
4,564,832	+		GFF4572	0.84	-1.6
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