Strain Fitness in Sphingobium sp. HT1-2 around GFF4566

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,557,468	-		GFF4564	0.45	+0.3
4,557,484	+		GFF4564	0.46	+0.9
4,557,489	+		GFF4564	0.46	-1.5
4,557,500	+		GFF4564	0.47	+0.7
4,557,521	-		GFF4564	0.48	-2.0
4,557,523	+		GFF4564	0.48	-1.5
4,557,523	+		GFF4564	0.48	-2.4
4,557,547	+		GFF4564	0.50	+0.0
4,557,547	+		GFF4564	0.50	-0.9
4,557,551	+		GFF4564	0.50	+0.4
4,557,555	-		GFF4564	0.50	-1.6
4,557,581	-		GFF4564	0.52	+0.3
4,557,593	+		GFF4564	0.53	-0.2
4,557,610	-		GFF4564	0.54	+0.0
4,557,610	-		GFF4564	0.54	+0.2
4,557,621	-		GFF4564	0.55	-0.1
4,557,664	-		GFF4564	0.57	-0.5
4,557,664	-		GFF4564	0.57	-1.1
4,557,668	+		GFF4564	0.58	+0.2
4,557,669	-		GFF4564	0.58	+0.0
4,557,697	-		GFF4564	0.60	-1.3
4,557,710	+		GFF4564	0.60	+0.3
4,557,729	-		GFF4564	0.62	+0.1
4,557,729	-		GFF4564	0.62	-0.8
4,557,729	-		GFF4564	0.62	-0.9
4,557,772	+		GFF4564	0.64	-1.0
4,557,782	+		GFF4564	0.65	+0.1
4,557,782	+		GFF4564	0.65	-0.8
4,557,782	+		GFF4564	0.65	+0.5
4,557,782	+		GFF4564	0.65	-0.8
4,557,782	+		GFF4564	0.65	+1.2
4,557,782	+		GFF4564	0.65	-0.4
4,557,782	+		GFF4564	0.65	+0.4
4,557,782	+		GFF4564	0.65	-1.6
4,557,788	-		GFF4564	0.65	-1.2
4,557,788	-		GFF4564	0.65	+0.9
4,557,790	-		GFF4564	0.66	-0.6
4,557,790	-		GFF4564	0.66	+0.1
4,557,790	-		GFF4564	0.66	-1.2
4,557,790	-		GFF4564	0.66	-3.0
4,557,790	-		GFF4564	0.66	-0.2
4,557,790	-		GFF4564	0.66	-0.6
4,557,790	-		GFF4564	0.66	-0.6
4,557,790	-		GFF4564	0.66	+0.0
4,557,790	-		GFF4564	0.66	-1.8
4,557,790	-		GFF4564	0.66	-1.7
4,557,790	-		GFF4564	0.66	-0.9
4,557,790	-		GFF4564	0.66	+0.2
4,557,790	-		GFF4564	0.66	-1.4
4,557,792	-		GFF4564	0.66	-0.6
4,557,795	-		GFF4564	0.66	-1.3
4,557,800	-		GFF4564	0.66	+0.2
4,557,808	-		GFF4564	0.67	+0.5
4,557,808	-		GFF4564	0.67	-0.2
4,557,808	-		GFF4564	0.67	+0.4
4,557,808	-		GFF4564	0.67	-0.1
4,557,809	+		GFF4564	0.67	-0.3
4,557,836	+		GFF4564	0.68	+0.6
4,557,836	+		GFF4564	0.68	-0.9
4,557,841	+		GFF4564	0.69	+0.4
4,557,844	-		GFF4564	0.69	-2.7
4,557,844	-		GFF4564	0.69	+0.2
4,557,844	-		GFF4564	0.69	-1.5
4,557,844	-		GFF4564	0.69	-1.4
4,557,844	-		GFF4564	0.69	-2.5
4,557,844	-		GFF4564	0.69	+0.5
4,557,845	-		GFF4564	0.69	-0.4
4,557,846	+		GFF4564	0.69	+0.2
4,557,849	-		GFF4564	0.69	-0.5
4,557,854	-		GFF4564	0.70	+0.1
4,557,855	+		GFF4564	0.70	-0.4
4,557,874	+		GFF4564	0.71	-1.6
4,557,876	-		GFF4564	0.71	+0.6
4,557,882	-		GFF4564	0.71	-0.0
4,557,882	-		GFF4564	0.71	-0.5
4,557,883	-		GFF4564	0.71	+0.0
4,557,906	+		GFF4564	0.73	-1.3
4,557,908	-		GFF4564	0.73	-0.9
4,557,918	+		GFF4564	0.74	-0.3
4,557,925	+		GFF4564	0.74	-0.4
4,557,943	-		GFF4564	0.75	-1.7
4,557,943	-		GFF4564	0.75	-0.1
4,557,946	+		GFF4564	0.76	+0.3
4,557,951	+		GFF4564	0.76	+0.1
4,557,951	+		GFF4564	0.76	-0.8
4,557,951	+		GFF4564	0.76	+0.2
4,557,954	-		GFF4564	0.76	+0.7
4,557,954	-		GFF4564	0.76	-0.9
4,557,967	-		GFF4564	0.77	+0.5
4,557,977	+		GFF4564	0.78	-0.2
4,557,985	-		GFF4564	0.78	+0.8
4,557,985	-		GFF4564	0.78	-1.3
4,557,989	-		GFF4564	0.78	-0.1
4,557,992	+		GFF4564	0.78	-2.0
4,557,997	+		GFF4564	0.79	+0.6
4,558,000	-		GFF4564	0.79	-1.1
4,558,005	-		GFF4564	0.79	-0.9
4,558,031	-		GFF4564	0.81	+0.1
4,558,062	-		GFF4564	0.83	+0.3
4,558,063	+		GFF4564	0.83	-0.4
4,558,071	-		GFF4564	0.84	-1.1
4,558,084	-		GFF4564	0.84	-0.3
4,558,090	-		GFF4564	0.85	+0.1
4,558,110	+		GFF4564	0.86	+0.1
4,558,111	+		GFF4564	0.86	+0.5
4,558,116	+		GFF4564	0.86	-0.1
4,558,121	+		GFF4564	0.87	+0.6
4,558,121	+		GFF4564	0.87	-2.2
4,558,124	-		GFF4564	0.87	-0.8
4,558,128	+		GFF4564	0.87	-0.8
4,558,129	-		GFF4564	0.87	-1.3
4,558,129	-		GFF4564	0.87	-0.6
4,558,129	-		GFF4564	0.87	-1.3
4,558,129	-		GFF4564	0.87	-0.7
4,558,129	-		GFF4564	0.87	+0.8
4,558,129	-		GFF4564	0.87	-0.1
4,558,129	-		GFF4564	0.87	-0.4
4,558,129	-		GFF4564	0.87	-2.1
4,558,129	-		GFF4564	0.87	-1.0
4,558,129	-		GFF4564	0.87	-0.9
4,558,129	-		GFF4564	0.87	-0.3
4,558,157	+		GFF4564	0.89	-1.4
4,558,157	+		GFF4564	0.89	-0.3
4,558,178	-				-0.1
4,558,191	+				-0.7
4,558,201	+				-0.7
4,558,201	+				-2.4
4,558,206	-				-1.1
4,558,233	+				-3.0
4,558,238	+				+0.1
4,558,241	-				+0.6
4,558,241	-				-0.1
4,558,241	-				-0.4
4,558,246	-				+0.1
4,558,255	+				-1.9
4,558,255	+				-0.6
4,558,255	+				+0.1
4,558,255	+				-2.4
4,558,255	+				-0.3
4,558,255	+				+0.9
4,558,260	+				-1.4
4,558,260	+				+0.4
4,558,260	+				-0.3
4,558,260	+				-1.8
4,558,260	+				-1.1
4,558,260	+				-0.0
4,558,263	-				-2.8
4,558,263	-				+0.0
4,558,263	-				-0.8
4,558,263	-				-0.3
4,558,263	-				-1.7
4,558,263	-				+0.4
4,558,263	-				-1.7
4,558,265	+				-0.4
4,558,268	-				+1.4
4,558,268	-				-1.6
4,558,268	-				-0.9
4,558,268	-				+0.5
4,558,268	-				-0.2
4,558,268	-				+0.2
4,558,268	-				-1.8
4,558,268	-				-2.6
4,558,273	-				+0.2
4,558,300	+				-0.6
4,558,300	+				-0.2
4,558,325	+				-0.1
4,558,353	-				+1.1
4,558,404	-		GFF4565	0.54	+1.2
4,558,411	+		GFF4565	0.60	-2.3
4,558,420	+		GFF4565	0.68	-2.9
4,558,421	-		GFF4565	0.68	-0.6
4,558,437	+		GFF4565	0.82	-0.4
4,558,437	+		GFF4565	0.82	-1.3
4,558,437	+		GFF4565	0.82	-0.3
4,558,437	+		GFF4565	0.82	-0.1
4,558,443	+		GFF4565	0.88	-0.5
4,558,451	-				-0.3
4,558,458	+				-1.2
4,558,470	+				-0.7
4,558,470	+				+1.1
4,558,470	+				-0.6
4,558,470	+				-0.6
4,558,470	+				+0.2
4,558,470	+				-1.8
4,558,470	+				-0.6
4,558,470	+				+0.2
4,558,475	+				+1.0
4,558,478	-				-1.6
4,558,478	-				-0.0
4,558,478	-				-2.8
4,558,478	-				+0.8
4,558,478	-				-0.7
4,558,478	-				+0.3
4,558,489	+				-0.5
4,558,494	+				-0.2
4,558,494	+				-2.1
4,558,497	-				-0.9
4,558,507	+				-2.0
4,558,509	+				+0.1
4,558,509	+				-2.1
4,558,509	+				-0.4
4,558,509	+				+0.5
4,558,511	+				-1.5
4,558,517	-				-0.7
4,558,517	-				-0.9
4,558,517	-				-0.1
4,558,517	-				+0.7
4,558,517	-				-0.9
4,558,517	-				-0.2
4,558,520	+				-0.1
4,558,522	-				+0.3
4,558,554	-				-1.4
4,558,567	+		GFF4566	0.10	-0.4
4,558,567	+		GFF4566	0.10	+0.1
4,558,567	+		GFF4566	0.10	+0.3
4,558,567	+		GFF4566	0.10	-0.5
4,558,567	+		GFF4566	0.10	+0.1
4,558,567	+		GFF4566	0.10	-1.5
4,558,567	+		GFF4566	0.10	+0.4
4,558,567	+		GFF4566	0.10	-1.2
4,558,567	+		GFF4566	0.10	-0.7
4,558,567	+		GFF4566	0.10	-0.4
4,558,567	+		GFF4566	0.10	+0.1
4,558,567	+		GFF4566	0.10	-0.8
4,558,567	+		GFF4566	0.10	-1.0
4,558,567	+		GFF4566	0.10	+0.2
4,558,567	+		GFF4566	0.10	-0.6
4,558,567	+		GFF4566	0.10	-0.2
4,558,567	+		GFF4566	0.10	-0.6
4,558,575	-		GFF4566	0.11	-2.5
4,558,575	-		GFF4566	0.11	-0.3
4,558,575	-		GFF4566	0.11	-1.6
4,558,575	-		GFF4566	0.11	-1.0
4,558,575	-		GFF4566	0.11	-0.5
4,558,575	-		GFF4566	0.11	-0.1
4,558,575	-		GFF4566	0.11	-0.8
4,558,575	-		GFF4566	0.11	-1.4
4,558,575	-		GFF4566	0.11	+0.4
4,558,575	-		GFF4566	0.11	+0.1
4,558,575	-		GFF4566	0.11	-1.8
4,558,575	-		GFF4566	0.11	-0.6
4,558,575	-		GFF4566	0.11	-0.7
4,558,586	+		GFF4566	0.12	-0.8
4,558,591	+		GFF4566	0.13	-0.8
4,558,601	+		GFF4566	0.14	+0.1
4,558,641	+		GFF4566	0.17	+0.9
4,558,681	+		GFF4566	0.21	-0.3
4,558,687	-		GFF4566	0.21	+0.2
4,558,706	-		GFF4566	0.23	+0.5
4,558,709	+		GFF4566	0.24	+0.2
4,558,730	-		GFF4566	0.25	-0.8
4,558,746	+		GFF4566	0.27	-0.5
4,558,749	-		GFF4566	0.27	-1.6
4,558,749	-		GFF4566	0.27	-0.3
4,558,754	-		GFF4566	0.28	-2.3
4,558,780	-		GFF4566	0.30	-0.7
4,558,781	-		GFF4566	0.30	+1.2
4,558,807	-		GFF4566	0.33	+1.2
4,558,807	-		GFF4566	0.33	-0.1
4,558,826	+		GFF4566	0.34	+0.3
4,558,844	+		GFF4566	0.36	-0.0
4,558,844	+		GFF4566	0.36	+0.8
4,558,844	+		GFF4566	0.36	-1.7
4,558,848	+		GFF4566	0.36	-2.0
4,558,852	-		GFF4566	0.37	-0.2
4,558,856	-		GFF4566	0.37	-1.1
4,558,856	-		GFF4566	0.37	-2.4
4,558,873	-		GFF4566	0.39	-1.2
4,558,888	-		GFF4566	0.40	-0.1
4,558,895	-		GFF4566	0.41	-0.3
4,558,916	+		GFF4566	0.43	+0.0
4,558,916	+		GFF4566	0.43	-0.4
4,558,924	-		GFF4566	0.43	-1.4
4,558,924	-		GFF4566	0.43	-1.7
4,558,924	-		GFF4566	0.43	+0.2
4,558,940	-		GFF4566	0.45	+0.2
4,558,950	-		GFF4566	0.46	-1.0
4,558,959	-		GFF4566	0.46	+0.6
4,558,964	+		GFF4566	0.47	+1.1
4,558,964	-		GFF4566	0.47	-1.3
4,558,983	+		GFF4566	0.49	-0.3
4,558,997	-		GFF4566	0.50	-1.5
4,559,018	-		GFF4566	0.52	-1.8
4,559,024	-		GFF4566	0.52	-0.1
4,559,025	-		GFF4566	0.53	+0.9
4,559,044	+		GFF4566	0.54	-1.0
4,559,054	+		GFF4566	0.55	-0.6
4,559,054	+		GFF4566	0.55	+1.0
4,559,054	+		GFF4566	0.55	+1.1
4,559,062	-		GFF4566	0.56	+1.5
4,559,073	+		GFF4566	0.57	-1.6
4,559,076	-		GFF4566	0.57	-0.1
4,559,081	-		GFF4566	0.58	-2.9
4,559,090	+		GFF4566	0.58	-1.0
4,559,100	+		GFF4566	0.59	-1.7
4,559,100	+		GFF4566	0.59	-0.3
4,559,100	+		GFF4566	0.59	+1.3
4,559,108	-		GFF4566	0.60	-1.0
4,559,122	+		GFF4566	0.61	-0.2
4,559,192	-		GFF4566	0.68	-0.9
4,559,237	-		GFF4566	0.72	+0.9
4,559,242	-		GFF4566	0.72	+0.0
4,559,267	+		GFF4566	0.75	-1.7
4,559,267	+		GFF4566	0.75	+0.5
4,559,275	-		GFF4566	0.75	+0.0
4,559,275	-		GFF4566	0.75	-0.6
4,559,275	-		GFF4566	0.75	-0.9
4,559,288	-		GFF4566	0.77	+0.9
4,559,288	-		GFF4566	0.77	-0.9
4,559,324	+		GFF4566	0.80	-0.3
4,559,324	+		GFF4566	0.80	-0.3
4,559,332	-		GFF4566	0.81	-0.4
4,559,332	-		GFF4566	0.81	+0.0
4,559,332	-		GFF4566	0.81	+0.9
4,559,355	+		GFF4566	0.83	-1.4
4,559,355	+		GFF4566	0.83	+0.5
4,559,363	-		GFF4566	0.84	+0.9
4,559,363	-		GFF4566	0.84	-0.2
4,559,367	-		GFF4566	0.84	+0.1
4,559,367	-		GFF4566	0.84	+1.5
4,559,373	-		GFF4566	0.84	+0.2
4,559,373	-		GFF4566	0.84	-0.6
4,559,375	-		GFF4566	0.85	-0.8
4,559,400	-		GFF4566	0.87	-0.1
4,559,403	+		GFF4566	0.87	+0.4
4,559,423	+		GFF4566	0.89	+0.4
4,559,423	+		GFF4566	0.89	-0.8
4,559,423	+		GFF4566	0.89	-2.3
4,559,426	-		GFF4566	0.89	-0.5
4,559,428	-		GFF4566	0.90	-0.3
4,559,436	-				-1.3
4,559,441	-				-1.3
4,559,446	+				-1.8
4,559,446	+				-2.2
4,559,460	+				+0.3
4,559,460	+				+0.4
4,559,480	+				+0.6
4,559,495	+				-1.9
4,559,514	+				+0.8
4,559,515	-				+0.2
4,559,517	-				-1.1
4,559,526	+				+0.2
4,559,526	+				-1.4
4,559,526	+				-1.2
4,559,526	+				+0.2
4,559,534	-				+0.2
4,559,534	-				-1.5
4,559,534	-				+0.1
4,559,534	-				-2.5
4,559,534	-				+0.1
4,559,596	+				-0.3
4,559,596	+				+0.1
4,559,596	+				+1.0
4,559,604	-				-1.1
4,559,604	-				+0.5
4,559,611	+				-0.6
4,559,622	+				-2.7
4,559,631	+				-0.3
4,559,631	+				-0.2
4,559,631	+				-0.8
4,559,631	+				-0.6
4,559,631	+				-1.4
4,559,635	+				-1.4
4,559,639	-				-1.0
4,559,639	-				-0.6
4,559,651	-				-0.1
4,559,656	-				+0.7
4,559,656	-				-2.9
4,559,672	+				-1.1
4,559,672	+				+0.7
4,559,672	+				-0.7
4,559,680	+				-1.9
4,559,680	-				-1.1
4,559,685	+				-0.7
4,559,687	-				-0.6
4,559,687	-				-1.6
4,559,691	+		GFF4567	0.11	-1.1
4,559,702	+		GFF4567	0.13	+0.0
4,559,710	-		GFF4567	0.14	-2.0
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4,560,156	+				+0.1
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4,560,167	+				+1.0
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4,560,183	+				-1.5
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4,560,191	-				+0.8
4,560,201	+				-1.4
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4,560,324	+		GFF4568	0.12	-2.3
4,560,324	+		GFF4568	0.12	-1.9
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4,560,349	+		GFF4568	0.14	-2.1
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4,560,538	+		GFF4568	0.30	-0.1
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4,560,538	+		GFF4568	0.30	-1.7
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4,560,538	+		GFF4568	0.30	-2.1
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