Strain Fitness in Sphingobium sp. HT1-2 around GFF4525

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,514,327	+		GFF4522	0.46	-0.7
4,514,338	+		GFF4522	0.50	+0.1
4,514,343	+		GFF4522	0.52	-1.8
4,514,346	-		GFF4522	0.53	-0.5
4,514,348	+		GFF4522	0.54	-1.7
4,514,348	+		GFF4522	0.54	-1.3
4,514,351	-		GFF4522	0.55	-0.3
4,514,353	+		GFF4522	0.56	-0.5
4,514,354	+		GFF4522	0.57	+0.6
4,514,380	-		GFF4522	0.67	-1.0
4,514,380	-		GFF4522	0.67	+1.0
4,514,391	+		GFF4522	0.72	-0.3
4,514,391	+		GFF4522	0.72	-0.5
4,514,412	+		GFF4522	0.80	+1.0
4,514,420	-		GFF4522	0.83	-1.0
4,514,421	-		GFF4522	0.84	-0.4
4,514,433	+		GFF4522	0.89	+1.5
4,514,433	+		GFF4522	0.89	+0.0
4,514,433	+		GFF4522	0.89	-2.2
4,514,436	-				-1.1
4,514,436	-				-0.3
4,514,439	+				-0.6
4,514,439	+				-0.5
4,514,439	+				-1.2
4,514,439	+				-0.5
4,514,439	+				-0.3
4,514,439	-				-0.1
4,514,447	-				+0.1
4,514,447	-				-1.5
4,514,447	-				+0.3
4,514,447	-				+0.2
4,514,447	-				-2.0
4,514,460	+				+0.5
4,514,470	-				+0.5
4,514,494	+				-0.4
4,514,510	+				+0.5
4,514,530	+				-0.8
4,514,530	+				-2.2
4,514,538	-				+0.7
4,514,539	-				-1.1
4,514,956	+				-0.6
4,514,959	+				+1.2
4,514,964	+				-0.9
4,514,979	+				+1.2
4,515,046	-				-0.2
4,515,055	-				-1.1
4,515,111	+				-0.7
4,515,164	-				-0.8
4,515,449	+				-0.4
4,515,495	-				-0.1
4,515,532	+				-2.0
4,515,540	-				-0.9
4,515,544	+				+0.3
4,515,581	+		GFF4526	0.14	+0.7
4,515,594	+		GFF4526	0.16	-0.1
4,515,607	+		GFF4526	0.18	-0.5
4,515,615	-		GFF4526	0.19	-0.7
4,515,630	+		GFF4526	0.22	+0.3
4,515,638	-		GFF4526	0.23	+0.1
4,515,750	-		GFF4526	0.41	+0.6
4,515,799	+		GFF4526	0.48	-1.7
4,515,804	+		GFF4526	0.49	+1.0
4,515,804	+		GFF4526	0.49	+0.1
4,515,804	+		GFF4526	0.49	-0.0
4,515,804	+		GFF4526	0.49	-0.7
4,515,805	-		GFF4526	0.49	+1.9
4,515,807	-		GFF4526	0.50	+1.1
4,515,812	-		GFF4526	0.50	+0.9
4,515,812	-		GFF4526	0.50	-0.3
4,515,812	-		GFF4526	0.50	-1.6
4,515,827	+		GFF4526	0.53	-1.6
4,515,827	-		GFF4526	0.53	-0.2
4,515,931	+		GFF4526	0.69	-1.5
4,515,955	+		GFF4526	0.73	-0.3
4,516,017	+		GFF4526	0.83	-0.6
4,516,047	+		GFF4526	0.88	-2.3
4,516,069	-				-0.8
4,516,113	-				-1.5
4,516,130	+				-2.2
4,516,130	+				-0.6
4,516,130	+				-0.0
4,516,130	+				+0.6
4,516,130	+				-1.3
4,516,130	+				-0.2
4,516,130	+				-1.6
4,516,130	+				-0.1
4,516,130	+				-0.2
4,516,130	+				+0.4
4,516,130	+				-1.6
4,516,130	+				+0.8
4,516,130	+				-1.5
4,516,130	+				-1.9
4,516,130	+				+0.1
4,516,130	+				-2.8
4,516,130	+				+0.8
4,516,130	+				-0.4
4,516,130	+				+0.5
4,516,138	-				-1.2
4,516,138	-				+0.1
4,516,138	-				+0.1
4,516,138	-				-0.3
4,516,138	-				+0.3
4,516,138	-				-1.2
4,516,138	-				-1.6
4,516,138	-				+0.1
4,516,138	-				+1.0
4,516,138	-				-1.6
4,516,138	-				-1.0
4,516,138	-				-0.4
4,516,143	-				-0.4
4,516,147	+				-0.7
4,516,147	+				-2.0
4,516,147	+				+0.7
4,516,147	+				+1.1
4,516,147	+				+0.3
4,516,147	+				-0.6
4,516,147	+				-0.5
4,516,147	+				+1.1
4,516,147	+				-1.0
4,516,155	+				-1.0
4,516,155	+				-2.1
4,516,155	-				-1.8
4,516,155	-				-0.9
4,516,155	-				+0.4
4,516,155	-				-0.3
4,516,155	-				+1.0
4,516,155	-				-1.6
4,516,155	-				-0.3
4,516,155	-				-0.1
4,516,155	-				+0.9
4,516,155	-				-0.0
4,516,155	-				+0.1
4,516,155	-				-2.0
4,516,155	-				-0.9
4,516,155	-				-0.3
4,516,155	-				-0.8
4,516,155	-				-2.0
4,516,155	-				-0.6
4,516,155	-				-0.0
4,516,178	+				-1.0
4,516,178	+				+0.2
4,516,178	+				-0.5
4,516,178	+				-0.6
4,516,186	-				+1.1
4,516,186	-				-2.0
4,516,186	-				-1.0
4,516,192	+				-0.7
4,516,197	+				-1.8
4,516,209	+				-0.1
4,516,212	-				+0.1
4,516,217	-				+0.2
4,516,217	-				+0.4
4,516,226	+				-1.2
4,516,227	-				+0.6
4,516,238	+				+0.2
4,516,243	+				+0.1
4,516,243	+				-0.5
4,516,243	+				-0.4
4,516,243	+				+1.1
4,516,243	+				-0.1
4,516,243	+				+0.3
4,516,243	+				-0.6
4,516,243	+				-1.0
4,516,243	+				-0.9
4,516,243	+				-0.5
4,516,243	+				-0.2
4,516,243	+				-0.9
4,516,243	+				-2.2
4,516,243	+				-0.6
4,516,243	+				-0.8
4,516,243	+				+0.9
4,516,243	+				-1.6
4,516,243	+				-0.8
4,516,243	+				-1.7
4,516,243	+				-0.2
4,516,243	+				+0.3
4,516,243	+				-2.0
4,516,243	+				-0.4
4,516,249	+				+0.8
4,516,251	-				+0.4
4,516,251	-				-0.2
4,516,251	-				-0.3
4,516,251	-				-1.5
4,516,251	-				-1.0
4,516,251	-				-1.3
4,516,251	-				-0.6
4,516,251	-				-1.3
4,516,251	-				-1.1
4,516,251	-				+0.6
4,516,251	-				-0.3
4,516,251	-				-2.4
4,516,251	-				-1.5
4,516,251	-				-0.9
4,516,251	-				-0.6
4,516,251	-				-1.3
4,516,251	-				+0.2
4,516,251	-				+0.5
4,516,251	-				-1.2
4,516,251	-				-0.2
4,516,251	-				-0.4
4,516,251	-				+0.1
4,516,251	-				-0.0
4,516,251	-				-0.3
4,516,251	-				-0.1
4,516,251	-				-0.2
4,516,251	-				+0.8
4,516,251	-				-0.1
4,516,251	-				+1.3
4,516,251	-				-0.7
4,516,251	-				+0.0
4,516,251	-				-0.3
4,516,257	-				-1.0
4,516,263	+				-1.3
4,516,268	+				+0.2
4,516,268	+				-0.0
4,516,268	+				-0.8
4,516,268	+				-1.7
4,516,268	+				+0.8
4,516,268	+				+0.9
4,516,270	-				-1.7
4,516,271	-				-0.6
4,516,271	-				+0.1
4,516,271	-				-0.6
4,516,271	-				-1.5
4,516,276	-				-1.1
4,516,276	-				-1.0
4,516,284	+		GFF4527	0.10	-1.7
4,516,292	-		GFF4527	0.11	-0.8
4,516,321	+		GFF4527	0.13	-0.1
4,516,326	+		GFF4527	0.13	-0.8
4,516,327	-		GFF4527	0.13	-1.4
4,516,334	+		GFF4527	0.14	-0.7
4,516,339	+		GFF4527	0.14	-1.9
4,516,339	+		GFF4527	0.14	+0.7
4,516,357	+		GFF4527	0.15	-0.3
4,516,373	+		GFF4527	0.16	-0.6
4,516,373	+		GFF4527	0.16	-1.2
4,516,381	-		GFF4527	0.17	+0.8
4,516,381	-		GFF4527	0.17	-0.8
4,516,383	-		GFF4527	0.17	-1.9
4,516,387	+		GFF4527	0.17	-1.1
4,516,398	+		GFF4527	0.18	-0.5
4,516,403	-		GFF4527	0.19	-0.4