Strain Fitness in Sphingobium sp. HT1-2 around GFF4511

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,503,199	+		GFF4510	0.13	+0.4
4,503,199	+		GFF4510	0.13	-0.1
4,503,199	+		GFF4510	0.13	+0.0
4,503,199	+		GFF4510	0.13	-0.6
4,503,199	+		GFF4510	0.13	-1.1
4,503,199	+		GFF4510	0.13	+1.2
4,503,199	+		GFF4510	0.13	-0.1
4,503,199	+		GFF4510	0.13	-0.2
4,503,199	+		GFF4510	0.13	-1.9
4,503,199	+		GFF4510	0.13	+0.7
4,503,199	+		GFF4510	0.13	-1.1
4,503,199	+		GFF4510	0.13	-2.8
4,503,199	+		GFF4510	0.13	+0.3
4,503,199	+		GFF4510	0.13	-0.8
4,503,204	-		GFF4510	0.13	-0.5
4,503,207	-		GFF4510	0.14	-1.8
4,503,207	-		GFF4510	0.14	-2.2
4,503,207	-		GFF4510	0.14	-0.9
4,503,207	-		GFF4510	0.14	-3.0
4,503,207	-		GFF4510	0.14	+0.2
4,503,207	-		GFF4510	0.14	-0.9
4,503,207	-		GFF4510	0.14	+1.1
4,503,207	-		GFF4510	0.14	-0.1
4,503,207	-		GFF4510	0.14	+0.2
4,503,207	-		GFF4510	0.14	-0.7
4,503,207	-		GFF4510	0.14	-0.4
4,503,207	-		GFF4510	0.14	+1.4
4,503,207	-		GFF4510	0.14	+0.6
4,503,207	-		GFF4510	0.14	-1.4
4,503,207	-		GFF4510	0.14	-1.3
4,503,207	-		GFF4510	0.14	-1.4
4,503,207	-		GFF4510	0.14	-0.2
4,503,207	-		GFF4510	0.14	-0.3
4,503,207	-		GFF4510	0.14	-0.3
4,503,207	-		GFF4510	0.14	+0.2
4,503,207	-		GFF4510	0.14	-0.0
4,503,207	-		GFF4510	0.14	+1.6
4,503,207	-		GFF4510	0.14	-1.9
4,503,207	-		GFF4510	0.14	+0.4
4,503,207	-		GFF4510	0.14	-1.9
4,503,207	-		GFF4510	0.14	-0.8
4,503,207	-		GFF4510	0.14	-0.4
4,503,207	-		GFF4510	0.14	-0.5
4,503,207	-		GFF4510	0.14	+0.8
4,503,207	-		GFF4510	0.14	+0.8
4,503,207	-		GFF4510	0.14	+0.0
4,503,207	-		GFF4510	0.14	-0.4
4,503,207	-		GFF4510	0.14	+0.3
4,503,207	-		GFF4510	0.14	+0.6
4,503,218	+		GFF4510	0.15	-1.9
4,503,219	+		GFF4510	0.15	-0.5
4,503,227	-		GFF4510	0.15	+0.7
4,503,234	-		GFF4510	0.16	-0.5
4,503,260	-		GFF4510	0.18	+1.6
4,503,294	+		GFF4510	0.21	+0.5
4,503,354	-		GFF4510	0.27	+0.6
4,503,374	+		GFF4510	0.28	-0.3
4,503,382	-		GFF4510	0.29	-0.2
4,503,416	-		GFF4510	0.32	-0.4
4,503,421	-		GFF4510	0.32	-0.6
4,503,459	+		GFF4510	0.36	-1.4
4,503,467	-		GFF4510	0.36	-0.0
4,503,468	-		GFF4510	0.37	+0.9
4,503,483	+		GFF4510	0.38	-0.5
4,503,483	+		GFF4510	0.38	-0.7
4,503,491	-		GFF4510	0.39	-0.4
4,503,491	-		GFF4510	0.39	-1.0
4,503,499	+		GFF4510	0.39	-0.3
4,503,505	+		GFF4510	0.40	-1.7
4,503,505	+		GFF4510	0.40	-0.7
4,503,505	-		GFF4510	0.40	-0.3
4,503,509	+		GFF4510	0.40	+1.3
4,503,510	+		GFF4510	0.40	-0.9
4,503,513	-		GFF4510	0.41	-2.6
4,503,523	-		GFF4510	0.41	+0.8
4,503,526	+		GFF4510	0.42	+0.3
4,503,526	+		GFF4510	0.42	+0.4
4,503,526	+		GFF4510	0.42	-1.1
4,503,534	-		GFF4510	0.42	-0.0
4,503,534	-		GFF4510	0.42	+0.4
4,503,534	-		GFF4510	0.42	-0.7
4,503,534	-		GFF4510	0.42	-0.4
4,503,534	-		GFF4510	0.42	+0.1
4,503,534	-		GFF4510	0.42	+0.3
4,503,534	-		GFF4510	0.42	-0.8
4,503,534	-		GFF4510	0.42	-0.8
4,503,545	+		GFF4510	0.43	+0.2
4,503,545	+		GFF4510	0.43	+0.1
4,503,550	+		GFF4510	0.44	-1.5
4,503,550	+		GFF4510	0.44	-1.1
4,503,550	+		GFF4510	0.44	-0.5
4,503,550	+		GFF4510	0.44	+1.0
4,503,550	+		GFF4510	0.44	-0.3
4,503,553	-		GFF4510	0.44	-0.5
4,503,553	-		GFF4510	0.44	+0.0
4,503,553	-		GFF4510	0.44	+0.6
4,503,553	-		GFF4510	0.44	-1.4
4,503,553	-		GFF4510	0.44	-0.1
4,503,558	-		GFF4510	0.44	+1.1
4,503,558	-		GFF4510	0.44	+0.7
4,503,558	-		GFF4510	0.44	-1.4
4,503,558	-		GFF4510	0.44	-1.1
4,503,560	-		GFF4510	0.45	+0.7
4,503,565	+		GFF4510	0.45	-1.6
4,503,591	+		GFF4510	0.47	-1.5
4,503,594	+		GFF4510	0.48	-0.2
4,503,614	-		GFF4510	0.49	-0.9
4,503,614	-		GFF4510	0.49	-1.3
4,503,620	-		GFF4510	0.50	+0.2
4,503,653	+		GFF4510	0.53	-1.6
4,503,653	+		GFF4510	0.53	-0.5
4,503,653	+		GFF4510	0.53	-1.0
4,503,659	+		GFF4510	0.53	+1.6
4,503,662	-		GFF4510	0.54	-1.3
4,503,667	-		GFF4510	0.54	+0.0
4,503,682	+		GFF4510	0.55	-1.1
4,503,692	+		GFF4510	0.56	+0.8
4,503,692	+		GFF4510	0.56	+0.1
4,503,692	+		GFF4510	0.56	-1.0
4,503,692	+		GFF4510	0.56	+0.1
4,503,692	+		GFF4510	0.56	-0.3
4,503,700	-		GFF4510	0.57	-1.6
4,503,700	-		GFF4510	0.57	-1.5
4,503,700	-		GFF4510	0.57	+0.0
4,503,700	-		GFF4510	0.57	+0.8
4,503,700	-		GFF4510	0.57	-0.1
4,503,700	-		GFF4510	0.57	-1.0
4,503,700	-		GFF4510	0.57	+0.4
4,503,700	-		GFF4510	0.57	-1.5
4,503,700	-		GFF4510	0.57	-1.1
4,503,729	-		GFF4510	0.59	-1.3
4,503,731	+		GFF4510	0.60	+0.1
4,503,739	-		GFF4510	0.60	+1.1
4,503,739	-		GFF4510	0.60	-1.2
4,503,739	-		GFF4510	0.60	+0.3
4,503,740	-		GFF4510	0.60	-0.3
4,503,747	-		GFF4510	0.61	+0.1
4,503,757	+		GFF4510	0.62	+0.5
4,503,765	-		GFF4510	0.63	+0.5
4,503,770	-		GFF4510	0.63	-0.2
4,503,770	-		GFF4510	0.63	+1.9
4,503,795	+		GFF4510	0.65	-0.6
4,503,818	+		GFF4510	0.67	-0.0
4,503,829	-		GFF4510	0.68	+0.1
4,503,871	-		GFF4510	0.72	-0.0
4,503,880	-		GFF4510	0.73	-1.3
4,503,883	+		GFF4510	0.73	+0.2
4,503,883	+		GFF4510	0.73	-1.2
4,503,883	+		GFF4510	0.73	+0.3
4,503,883	+		GFF4510	0.73	-0.3
4,503,884	+		GFF4510	0.73	-1.1
4,503,885	+		GFF4510	0.73	+1.3
4,503,891	-		GFF4510	0.74	-0.3
4,503,891	-		GFF4510	0.74	+0.1
4,503,891	-		GFF4510	0.74	+1.0
4,503,892	+		GFF4510	0.74	-0.2
4,503,892	+		GFF4510	0.74	-0.4
4,503,892	+		GFF4510	0.74	-0.1
4,503,893	+		GFF4510	0.74	+0.1
4,503,893	+		GFF4510	0.74	-2.1
4,503,893	-		GFF4510	0.74	+0.3
4,503,893	-		GFF4510	0.74	-1.1
4,503,900	-		GFF4510	0.74	-1.4
4,503,900	-		GFF4510	0.74	-0.5
4,503,901	-		GFF4510	0.75	-0.5
4,503,903	+		GFF4510	0.75	-1.3
4,503,906	+		GFF4510	0.75	+1.1
4,503,906	+		GFF4510	0.75	-1.0
4,503,911	+		GFF4510	0.75	-1.0
4,503,911	-		GFF4510	0.75	-2.2
4,503,914	-		GFF4510	0.76	-0.6
4,503,919	-		GFF4510	0.76	+1.0
4,503,921	+		GFF4510	0.76	-0.7
4,503,924	-		GFF4510	0.77	-1.3
4,503,967	-		GFF4510	0.80	-0.3
4,503,967	-		GFF4510	0.80	+1.0
4,503,978	-		GFF4510	0.81	+0.8
4,503,986	+		GFF4510	0.82	-0.7
4,503,986	+		GFF4510	0.82	-2.9
4,503,986	+		GFF4510	0.82	+0.6
4,503,986	+		GFF4510	0.82	+0.5
4,503,988	-		GFF4510	0.82	+0.1
4,503,994	-		GFF4510	0.83	+0.4
4,503,994	-		GFF4510	0.83	+1.2
4,504,000	+		GFF4510	0.83	+0.3
4,504,015	+		GFF4510	0.85	+0.0
4,504,015	+		GFF4510	0.85	+0.7
4,504,023	-		GFF4510	0.85	+1.3
4,504,053	-		GFF4510	0.88	+0.1
4,504,056	+		GFF4510	0.88	+0.1
4,504,083	-				+0.0
4,504,105	+				+0.2
4,504,105	+				-0.8
4,504,105	+				+1.0
4,504,105	+				-0.6
4,504,105	+				-1.6
4,504,105	+				-0.7
4,504,113	-				-0.5
4,504,113	-				-1.1
4,504,113	-				-0.2
4,504,113	-				+0.1
4,504,113	-				+0.5
4,504,113	-				+0.5
4,504,113	-				+0.7
4,504,113	-				-0.3
4,504,113	-				-0.7
4,504,120	+				+0.5
4,504,155	-				+0.4
4,504,164	+				-0.3
4,504,208	-				-0.4
4,504,209	-				-1.6
4,504,225	+				-0.3
4,504,246	+		GFF4511	0.10	+1.8
4,504,246	+		GFF4511	0.10	+1.3
4,504,247	-		GFF4511	0.10	-0.6
4,504,254	-		GFF4511	0.12	-0.1
4,504,256	+		GFF4511	0.12	+0.0
4,504,298	+		GFF4511	0.19	+0.1
4,504,298	+		GFF4511	0.19	-1.6
4,504,306	-		GFF4511	0.21	-0.4
4,504,306	-		GFF4511	0.21	-1.1
4,504,306	-		GFF4511	0.21	-0.1
4,504,306	-		GFF4511	0.21	-1.4
4,504,312	-		GFF4511	0.22	+0.2
4,504,366	+		GFF4511	0.31	-2.3
4,504,374	-		GFF4511	0.33	+0.4
4,504,376	+		GFF4511	0.33	-0.5
4,504,376	+		GFF4511	0.33	+0.8
4,504,376	+		GFF4511	0.33	-0.7
4,504,376	+		GFF4511	0.33	+1.8
4,504,384	-		GFF4511	0.34	-1.1
4,504,384	-		GFF4511	0.34	+1.1
4,504,384	-		GFF4511	0.34	+0.3
4,504,384	-		GFF4511	0.34	-0.4
4,504,390	-		GFF4511	0.35	-0.4
4,504,390	-		GFF4511	0.35	-0.1
4,504,397	+		GFF4511	0.37	-2.6
4,504,397	+		GFF4511	0.37	-0.5
4,504,398	-		GFF4511	0.37	-0.2
4,504,407	-		GFF4511	0.38	+0.2
4,504,409	+		GFF4511	0.39	+0.2
4,504,410	-		GFF4511	0.39	-0.5
4,504,416	+		GFF4511	0.40	-0.0
4,504,417	-		GFF4511	0.40	-0.8
4,504,451	+		GFF4511	0.46	+0.2
4,504,454	+		GFF4511	0.47	-0.3
4,504,454	+		GFF4511	0.47	+0.5
4,504,462	-		GFF4511	0.48	-0.2
4,504,468	+		GFF4511	0.49	+2.1
4,504,468	+		GFF4511	0.49	+0.5
4,504,468	+		GFF4511	0.49	+0.2
4,504,468	+		GFF4511	0.49	-0.1
4,504,468	+		GFF4511	0.49	+0.7
4,504,468	+		GFF4511	0.49	-0.7
4,504,468	+		GFF4511	0.49	+1.3
4,504,468	+		GFF4511	0.49	-0.4
4,504,468	+		GFF4511	0.49	+0.9
4,504,468	+		GFF4511	0.49	+0.1
4,504,468	+		GFF4511	0.49	-0.3
4,504,468	+		GFF4511	0.49	-0.5
4,504,468	+		GFF4511	0.49	-1.1
4,504,470	+		GFF4511	0.49	-0.3
4,504,476	-		GFF4511	0.50	+0.3
4,504,476	-		GFF4511	0.50	+0.9
4,504,476	-		GFF4511	0.50	-2.4
4,504,476	-		GFF4511	0.50	-0.3
4,504,476	-		GFF4511	0.50	+0.1
4,504,476	-		GFF4511	0.50	+0.4
4,504,476	-		GFF4511	0.50	-1.0
4,504,476	-		GFF4511	0.50	+0.8
4,504,476	-		GFF4511	0.50	-0.3
4,504,476	-		GFF4511	0.50	+0.5
4,504,476	-		GFF4511	0.50	-0.4
4,504,476	-		GFF4511	0.50	-1.4
4,504,476	-		GFF4511	0.50	+0.5
4,504,476	-		GFF4511	0.50	+0.7
4,504,476	-		GFF4511	0.50	-2.1
4,504,476	-		GFF4511	0.50	-1.4
4,504,478	+		GFF4511	0.51	+0.3
4,504,486	-		GFF4511	0.52	+1.0
4,504,486	-		GFF4511	0.52	+1.8
4,504,488	+		GFF4511	0.53	-0.5
4,504,488	+		GFF4511	0.53	-1.7
4,504,488	+		GFF4511	0.53	-0.4
4,504,488	+		GFF4511	0.53	-0.1
4,504,494	-		GFF4511	0.54	-1.1
4,504,496	-		GFF4511	0.54	-0.7
4,504,496	-		GFF4511	0.54	-1.1
4,504,496	-		GFF4511	0.54	-1.6
4,504,496	-		GFF4511	0.54	-1.3
4,504,507	+		GFF4511	0.56	-1.4
4,504,507	+		GFF4511	0.56	-0.4
4,504,507	+		GFF4511	0.56	+0.4
4,504,515	-		GFF4511	0.57	-0.1
4,504,515	-		GFF4511	0.57	+0.4
4,504,525	+		GFF4511	0.59	-1.9
4,504,538	-		GFF4511	0.61	-0.8
4,504,539	+		GFF4511	0.61	-1.8
4,504,571	+		GFF4511	0.67	+0.0
4,504,580	-		GFF4511	0.69	+0.1
4,504,605	+		GFF4511	0.73	-1.4
4,504,617	+		GFF4511	0.75	-0.1
4,504,637	+		GFF4511	0.79	-2.3
4,504,655	+		GFF4511	0.82	+1.7
4,504,655	+		GFF4511	0.82	-1.1
4,504,660	+		GFF4511	0.83	-0.9
4,504,663	-		GFF4511	0.83	-1.1
4,504,665	+		GFF4511	0.83	-2.1
4,504,686	+		GFF4511	0.87	+0.8
4,504,686	+		GFF4511	0.87	-2.4
4,504,686	+		GFF4511	0.87	-0.9
4,504,692	+		GFF4511	0.88	-0.2
4,504,692	+		GFF4511	0.88	-0.5
4,504,692	+		GFF4511	0.88	+1.1
4,504,692	+		GFF4511	0.88	+1.3
4,504,700	-		GFF4511	0.90	-0.8
4,504,700	-		GFF4511	0.90	+1.0
4,504,700	-		GFF4511	0.90	+0.4
4,504,700	-		GFF4511	0.90	-0.1
4,504,702	+				-1.3
4,504,702	+				-2.3
4,504,702	-				-0.8
4,504,702	-				-0.0
4,504,703	+				-0.6
4,504,703	+				+1.1
4,504,703	+				+1.1
4,504,703	+				-1.3
4,504,703	+				+1.1
4,504,703	+				-0.1
4,504,703	+				+1.4
4,504,703	+				-2.5
4,504,703	+				+0.1
4,504,703	+				+0.7
4,504,703	+				-0.7
4,504,703	+				+0.8
4,504,703	+				-1.3
4,504,703	+				-1.4
4,504,703	+				-1.3
4,504,703	+				+0.1
4,504,703	+				+0.2
4,504,703	+				-1.7
4,504,711	-				-2.6
4,504,711	-				-0.1
4,504,711	-				-0.3
4,504,711	-				+0.7
4,504,711	-				+0.2
4,504,711	-				+0.3
4,504,711	-				-1.7
4,504,711	-				-0.8
4,504,711	-				+0.1
4,504,711	-				-0.6
4,504,711	-				-1.9
4,504,711	-				-0.6
4,504,711	-				-0.2
4,504,711	-				+0.3
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