Strain Fitness in Sphingobium sp. HT1-2 around GFF4452

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,446,980	+		GFF4451	0.19	+2.0
4,446,998	-		GFF4451	0.21	-1.0
4,447,001	-		GFF4451	0.21	-1.1
4,447,020	+		GFF4451	0.22	+0.8
4,447,028	-		GFF4451	0.23	+1.9
4,447,058	-		GFF4451	0.25	+0.7
4,447,086	-		GFF4451	0.28	-0.1
4,447,127	-		GFF4451	0.31	-0.5
4,447,190	+		GFF4451	0.36	-0.0
4,447,316	+		GFF4451	0.46	+0.2
4,447,316	+		GFF4451	0.46	+1.2
4,447,319	-		GFF4451	0.46	+1.5
4,447,324	-		GFF4451	0.47	+1.1
4,447,324	-		GFF4451	0.47	+0.4
4,447,325	-		GFF4451	0.47	+1.7
4,447,329	+		GFF4451	0.47	-1.0
4,447,337	+		GFF4451	0.48	+0.7
4,447,337	+		GFF4451	0.48	+0.1
4,447,337	+		GFF4451	0.48	+0.1
4,447,337	+		GFF4451	0.48	-0.2
4,447,337	+		GFF4451	0.48	-0.4
4,447,337	+		GFF4451	0.48	+1.0
4,447,337	+		GFF4451	0.48	+0.3
4,447,337	+		GFF4451	0.48	-0.1
4,447,337	+		GFF4451	0.48	+0.1
4,447,337	+		GFF4451	0.48	-1.0
4,447,337	-		GFF4451	0.48	-0.9
4,447,337	-		GFF4451	0.48	+0.3
4,447,337	-		GFF4451	0.48	+0.1
4,447,345	-		GFF4451	0.49	-1.1
4,447,345	-		GFF4451	0.49	+1.3
4,447,345	-		GFF4451	0.49	+0.5
4,447,345	-		GFF4451	0.49	+0.7
4,447,345	-		GFF4451	0.49	-1.9
4,447,345	-		GFF4451	0.49	-2.0
4,447,345	-		GFF4451	0.49	+0.6
4,447,345	-		GFF4451	0.49	+0.0
4,447,350	-		GFF4451	0.49	-0.9
4,447,363	+		GFF4451	0.50	-0.1
4,447,370	+		GFF4451	0.51	+1.4
4,447,412	+		GFF4451	0.54	-1.8
4,447,415	-		GFF4451	0.54	-0.7
4,447,415	-		GFF4451	0.54	-0.7
4,447,415	-		GFF4451	0.54	-1.5
4,447,417	+		GFF4451	0.54	+1.0
4,447,422	+		GFF4451	0.55	-0.3
4,447,430	-		GFF4451	0.55	-0.7
4,447,430	-		GFF4451	0.55	+0.6
4,447,430	-		GFF4451	0.55	-1.6
4,447,443	-		GFF4451	0.56	-0.1
4,447,443	-		GFF4451	0.56	-0.7
4,447,459	-		GFF4451	0.58	-1.5
4,447,501	-		GFF4451	0.61	-0.6
4,447,509	+		GFF4451	0.62	-0.6
4,447,517	-		GFF4451	0.62	-1.3
4,447,517	-		GFF4451	0.62	+1.7
4,447,543	+		GFF4451	0.64	-0.7
4,447,543	+		GFF4451	0.64	+0.5
4,447,548	+		GFF4451	0.65	-0.8
4,447,548	+		GFF4451	0.65	-0.7
4,447,617	-		GFF4451	0.70	+0.4
4,447,618	+		GFF4451	0.71	+0.6
4,447,619	+		GFF4451	0.71	-0.7
4,447,654	+		GFF4451	0.73	-0.1
4,447,654	+		GFF4451	0.73	+0.0
4,447,659	+		GFF4451	0.74	+0.4
4,447,659	+		GFF4451	0.74	-0.9
4,447,662	-		GFF4451	0.74	+1.4
4,447,662	-		GFF4451	0.74	-1.1
4,447,662	-		GFF4451	0.74	+0.1
4,447,667	-		GFF4451	0.74	+0.3
4,447,667	-		GFF4451	0.74	+1.0
4,447,667	-		GFF4451	0.74	+1.0
4,447,667	-		GFF4451	0.74	-0.4
4,447,671	+		GFF4451	0.75	-0.5
4,447,672	-		GFF4451	0.75	-3.1
4,447,696	-		GFF4451	0.77	-1.5
4,447,713	-		GFF4451	0.78	+0.6
4,447,738	+		GFF4451	0.80	+0.2
4,447,738	+		GFF4451	0.80	+0.8
4,447,738	+		GFF4451	0.80	+1.2
4,447,743	+		GFF4451	0.81	-0.1
4,447,743	+		GFF4451	0.81	+1.1
4,447,784	+		GFF4451	0.84	-0.5
4,447,786	+		GFF4451	0.84	+0.3
4,447,794	-		GFF4451	0.85	+1.1
4,447,794	-		GFF4451	0.85	+0.4
4,448,023	+				-0.4
4,448,031	-				+1.3
4,448,074	+		GFF4452	0.12	+0.5
4,448,113	+		GFF4452	0.17	-1.8
4,448,120	+		GFF4452	0.18	-0.2
4,448,120	+		GFF4452	0.18	-0.2
4,448,126	-		GFF4452	0.18	-0.5
4,448,130	+		GFF4452	0.19	+0.1
4,448,137	+		GFF4452	0.20	-1.0
4,448,137	+		GFF4452	0.20	-0.5
4,448,143	-		GFF4452	0.20	+0.9
4,448,145	-		GFF4452	0.21	-1.7
4,448,145	-		GFF4452	0.21	+0.3
4,448,157	+		GFF4452	0.22	-0.6
4,448,165	-		GFF4452	0.23	+0.4
4,448,172	+		GFF4452	0.24	-2.5
4,448,183	-		GFF4452	0.25	+1.4
4,448,190	-		GFF4452	0.26	-1.7
4,448,199	+		GFF4452	0.27	+0.4
4,448,247	-		GFF4452	0.33	+1.9
4,448,250	-		GFF4452	0.34	-0.7
4,448,253	+		GFF4452	0.34	-0.3
4,448,329	+		GFF4452	0.44	+0.5
4,448,332	+		GFF4452	0.44	+0.1
4,448,385	+		GFF4452	0.50	+0.7
4,448,385	+		GFF4452	0.50	+1.1
4,448,388	-		GFF4452	0.51	-0.7
4,448,393	-		GFF4452	0.51	-1.5
4,448,393	-		GFF4452	0.51	-0.7
4,448,393	-		GFF4452	0.51	+0.2
4,448,400	+		GFF4452	0.52	-1.3
4,448,420	+		GFF4452	0.55	-0.7
4,448,452	+		GFF4452	0.59	-0.2
4,448,452	-		GFF4452	0.59	-0.0
4,448,482	+		GFF4452	0.63	-1.7
4,448,490	-		GFF4452	0.64	+0.4
4,448,508	+		GFF4452	0.66	-0.7
4,448,513	+		GFF4452	0.66	+1.5
4,448,513	+		GFF4452	0.66	-0.1
4,448,513	+		GFF4452	0.66	+0.3
4,448,513	+		GFF4452	0.66	-0.5
4,448,513	+		GFF4452	0.66	-0.2
4,448,513	+		GFF4452	0.66	-0.3
4,448,513	+		GFF4452	0.66	-2.0
4,448,513	+		GFF4452	0.66	+0.2
4,448,515	+		GFF4452	0.67	+0.9
4,448,521	-		GFF4452	0.67	-1.0
4,448,521	-		GFF4452	0.67	+1.2
4,448,521	-		GFF4452	0.67	-1.5
4,448,521	-		GFF4452	0.67	-0.7
4,448,521	-		GFF4452	0.67	-0.6
4,448,521	-		GFF4452	0.67	-0.6
4,448,521	-		GFF4452	0.67	+1.5
4,448,526	+		GFF4452	0.68	+0.3
4,448,538	+		GFF4452	0.70	+0.6
4,448,538	+		GFF4452	0.70	-2.3
4,448,541	-		GFF4452	0.70	-0.5
4,448,541	-		GFF4452	0.70	+0.1
4,448,546	-		GFF4452	0.71	+0.3
4,448,546	-		GFF4452	0.71	-0.4
4,448,546	-		GFF4452	0.71	+1.2
4,448,549	+		GFF4452	0.71	+0.1
4,448,549	+		GFF4452	0.71	+0.1
4,448,551	-		GFF4452	0.71	-0.1
4,448,556	-		GFF4452	0.72	+0.8
4,448,595	+		GFF4452	0.77	-0.9
4,448,595	+		GFF4452	0.77	-0.9
4,448,638	+		GFF4452	0.82	+1.0
4,448,705	-				+0.6
4,448,707	+				+0.4
4,448,712	-				-0.4
4,448,715	-				+0.4
4,448,715	-				-0.6
4,448,746	+				+1.1
4,448,756	+				-0.2
4,448,757	+				-1.3
4,448,757	+				-0.0
4,448,777	+				-0.8
4,448,777	+				-0.0
4,448,785	-				+1.3
4,448,792	+				+0.6
4,448,792	+				+0.8
4,448,794	+				+0.3
4,448,794	+				-0.8
4,448,794	+				+1.8
4,448,799	-				+0.4
4,448,799	-				+0.2
4,448,800	-				-1.2
4,448,801	+				+1.0
4,448,802	-				-0.9
4,448,816	+		GFF4453	0.12	-0.1
4,448,824	+		GFF4453	0.16	-1.5
4,448,824	+		GFF4453	0.16	-0.5
4,448,832	-		GFF4453	0.20	-0.2
4,448,832	-		GFF4453	0.20	+0.2
4,448,850	-		GFF4453	0.28	-0.6
4,448,858	-		GFF4453	0.32	-0.2
4,448,867	+		GFF4453	0.36	+0.2
4,448,918	-		GFF4453	0.60	+0.6
4,448,923	-		GFF4453	0.62	+0.6
4,448,923	-		GFF4453	0.62	-0.1
4,448,925	-		GFF4453	0.63	-0.3
4,448,928	-		GFF4453	0.64	+0.2
4,448,932	+		GFF4453	0.66	-0.7
4,448,934	-		GFF4453	0.67	-0.2
4,448,940	-		GFF4453	0.70	+0.4
4,448,940	-		GFF4453	0.70	+0.1
4,448,969	+				+0.0
4,448,971	-				-0.6
4,449,010	-				-0.5
4,449,042	-				-0.5
4,449,050	-				+1.2
4,449,054	+				-0.6
4,449,066	+				+0.3
4,449,082	+				+0.9
4,449,082	+				-0.3
4,449,082	+				+0.9
4,449,089	+				-0.6
4,449,089	+				-1.3
4,449,089	+				-0.1
4,449,090	-				+0.5
4,449,092	+				+0.5
4,449,097	-				+0.9
4,449,097	-				-0.0
4,449,098	-				+0.7
4,449,118	+				-0.9
4,449,126	-				+0.5
4,449,186	+		GFF4454	0.13	+0.3
4,449,191	+		GFF4454	0.13	+0.4
4,449,202	-		GFF4454	0.14	-0.5
4,449,243	+		GFF4454	0.16	-1.1
4,449,243	+		GFF4454	0.16	-0.0
4,449,251	-		GFF4454	0.17	-0.9
4,449,273	+		GFF4454	0.18	+0.7
4,449,273	+		GFF4454	0.18	+0.8
4,449,273	+		GFF4454	0.18	+2.1
4,449,332	-		GFF4454	0.22	-2.6
4,449,332	-		GFF4454	0.22	+0.2
4,449,332	-		GFF4454	0.22	+0.1
4,449,341	+		GFF4454	0.22	+1.0
4,449,349	-		GFF4454	0.23	-0.1
4,449,368	-		GFF4454	0.24	-0.5
4,449,368	-		GFF4454	0.24	+0.2
4,449,385	+		GFF4454	0.25	+0.7
4,449,393	-		GFF4454	0.25	+0.1
4,449,427	+		GFF4454	0.27	-0.3
4,449,427	+		GFF4454	0.27	-1.8
4,449,443	+		GFF4454	0.28	-0.6
4,449,456	+		GFF4454	0.29	-0.2
4,449,466	+		GFF4454	0.30	+0.4
4,449,471	+		GFF4454	0.30	+0.4
4,449,471	+		GFF4454	0.30	+0.4
4,449,474	-		GFF4454	0.30	+0.7
4,449,474	-		GFF4454	0.30	-1.9
4,449,484	-		GFF4454	0.31	-0.5
4,449,509	+		GFF4454	0.32	-0.2
4,449,528	-		GFF4454	0.33	-0.2
4,449,535	-		GFF4454	0.34	+1.3
4,449,572	+		GFF4454	0.36	-0.2
4,449,575	-		GFF4454	0.36	-0.7
4,449,580	-		GFF4454	0.36	+0.0
4,449,580	-		GFF4454	0.36	+1.3
4,449,618	+		GFF4454	0.38	+0.6
4,449,621	-		GFF4454	0.39	+0.2
4,449,621	-		GFF4454	0.39	+0.0
4,449,626	-		GFF4454	0.39	-0.3
4,449,644	+		GFF4454	0.40	-2.5
4,449,676	+		GFF4454	0.42	+0.8
4,449,677	+		GFF4454	0.42	+1.0
4,449,697	-		GFF4454	0.43	+0.5
4,449,713	+		GFF4454	0.44	-0.3
4,449,723	+		GFF4454	0.45	-0.3
4,449,723	+		GFF4454	0.45	+0.6
4,449,723	+		GFF4454	0.45	-0.3
4,449,731	-		GFF4454	0.45	+0.9
4,449,749	+		GFF4454	0.46	-0.5
4,449,749	+		GFF4454	0.46	-0.7
4,449,757	-		GFF4454	0.47	+0.1
4,449,766	-		GFF4454	0.47	+0.2