Strain Fitness in Sphingobium sp. HT1-2 around GFF4448

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,443,633	+		GFF4446	0.90	+1.3
4,443,637	-				-1.5
4,443,685	-				+1.0
4,443,730	-				-2.5
4,443,743	-				-0.1
4,443,786	-				-0.3
4,443,818	+				+0.2
4,443,826	-				+1.2
4,443,826	-				-1.5
4,443,826	-				-1.4
4,443,826	-				+0.6
4,443,826	-				+0.7
4,443,855	+				-0.2
4,443,855	+				-0.4
4,443,855	+				+1.0
4,443,855	+				+0.3
4,443,855	+				-1.0
4,443,855	+				-0.4
4,443,855	+				+0.7
4,443,855	+				+0.6
4,443,855	+				-0.7
4,443,855	+				+0.7
4,443,855	+				-1.3
4,443,855	+				+0.3
4,443,855	+				-1.1
4,443,855	+				+1.1
4,443,863	-				-1.1
4,443,863	-				+1.4
4,443,863	-				+0.7
4,443,863	-				+1.5
4,443,863	-				-0.9
4,443,863	-				+0.8
4,443,863	-				+0.0
4,443,863	-				-2.5
4,443,863	-				-0.5
4,443,863	-				+1.1
4,443,863	-				+0.2
4,443,863	-				+1.6
4,443,863	-				-0.2
4,443,863	-				+0.4
4,443,863	-				-0.5
4,443,863	-				-1.0
4,443,863	-				-0.4
4,443,863	-				+1.0
4,443,863	-				-1.4
4,443,863	-				+0.4
4,443,863	-				+1.3
4,443,863	-				-2.0
4,443,873	-				+0.1
4,443,901	+				-2.1
4,443,909	+				+0.9
4,443,909	+				-0.2
4,443,909	+				+1.8
4,443,909	+				-0.9
4,443,909	+				+1.1
4,443,909	+				-0.1
4,443,912	-				-0.4
4,443,912	-				-0.3
4,443,917	-				-0.2
4,443,922	-				-2.1
4,443,979	-				+0.9
4,443,992	+		GFF4447	0.10	-0.3
4,444,000	-		GFF4447	0.12	-0.5
4,444,000	-		GFF4447	0.12	-0.3
4,444,036	+		GFF4447	0.17	+0.4
4,444,053	+		GFF4447	0.19	-0.9
4,444,061	-		GFF4447	0.20	+0.4
4,444,061	-		GFF4447	0.20	+0.4
4,444,080	+		GFF4447	0.23	+0.2
4,444,080	+		GFF4447	0.23	+0.1
4,444,088	-		GFF4447	0.24	+0.8
4,444,096	+		GFF4447	0.25	+0.1
4,444,104	-		GFF4447	0.26	+1.8
4,444,127	-		GFF4447	0.30	+0.5
4,444,127	-		GFF4447	0.30	+0.1
4,444,148	-		GFF4447	0.33	-1.5
4,444,148	-		GFF4447	0.33	-1.4
4,444,186	+		GFF4447	0.38	-2.3
4,444,186	+		GFF4447	0.38	+0.8
4,444,194	-		GFF4447	0.39	-0.3
4,444,198	-		GFF4447	0.40	+0.0
4,444,200	-		GFF4447	0.40	-0.1
4,444,201	+		GFF4447	0.40	+0.6
4,444,201	+		GFF4447	0.40	-1.3
4,444,201	+		GFF4447	0.40	+0.5
4,444,201	+		GFF4447	0.40	+0.1
4,444,201	+		GFF4447	0.40	-0.1
4,444,201	+		GFF4447	0.40	+0.7
4,444,201	+		GFF4447	0.40	+0.4
4,444,201	+		GFF4447	0.40	-2.3
4,444,201	+		GFF4447	0.40	+0.5
4,444,201	+		GFF4447	0.40	+2.4
4,444,201	+		GFF4447	0.40	+1.0
4,444,201	+		GFF4447	0.40	+0.4
4,444,201	+		GFF4447	0.40	-1.0
4,444,201	+		GFF4447	0.40	+0.4
4,444,201	+		GFF4447	0.40	+1.2
4,444,201	+		GFF4447	0.40	+0.4
4,444,209	-		GFF4447	0.41	-0.5
4,444,209	-		GFF4447	0.41	-2.4
4,444,209	-		GFF4447	0.41	+0.5
4,444,209	-		GFF4447	0.41	+0.4
4,444,209	-		GFF4447	0.41	-0.6
4,444,209	-		GFF4447	0.41	+0.7
4,444,209	-		GFF4447	0.41	+0.1
4,444,209	-		GFF4447	0.41	+0.0
4,444,209	-		GFF4447	0.41	+0.8
4,444,209	-		GFF4447	0.41	-0.8
4,444,209	-		GFF4447	0.41	-0.1
4,444,209	-		GFF4447	0.41	+1.0
4,444,209	-		GFF4447	0.41	+0.6
4,444,209	-		GFF4447	0.41	-2.1
4,444,217	-		GFF4447	0.42	-0.2
4,444,221	+		GFF4447	0.43	+1.1
4,444,221	+		GFF4447	0.43	+0.5
4,444,222	+		GFF4447	0.43	+1.3
4,444,227	+		GFF4447	0.44	+0.2
4,444,230	-		GFF4447	0.44	-0.9
4,444,230	-		GFF4447	0.44	-0.1
4,444,230	-		GFF4447	0.44	+1.0
4,444,230	-		GFF4447	0.44	-1.6
4,444,230	-		GFF4447	0.44	+2.3
4,444,232	+		GFF4447	0.45	-0.8
4,444,232	+		GFF4447	0.45	+0.1
4,444,240	-		GFF4447	0.46	+0.2
4,444,240	-		GFF4447	0.46	-0.1
4,444,245	-		GFF4447	0.46	+0.3
4,444,254	+		GFF4447	0.48	-0.5
4,444,262	-		GFF4447	0.49	+0.3
4,444,309	-		GFF4447	0.55	+0.9
4,444,349	+		GFF4447	0.61	-0.9
4,444,349	+		GFF4447	0.61	-0.2
4,444,379	-		GFF4447	0.65	+0.5
4,444,383	+		GFF4447	0.66	+0.1
4,444,391	-		GFF4447	0.67	+0.5
4,444,391	-		GFF4447	0.67	-0.0
4,444,393	+		GFF4447	0.67	+0.2
4,444,393	+		GFF4447	0.67	-1.7
4,444,393	+		GFF4447	0.67	+1.3
4,444,398	+		GFF4447	0.68	-1.1
4,444,398	+		GFF4447	0.68	-0.3
4,444,400	+		GFF4447	0.68	+0.4
4,444,401	-		GFF4447	0.69	-0.6
4,444,401	-		GFF4447	0.69	+0.1
4,444,401	-		GFF4447	0.69	-1.1
4,444,401	-		GFF4447	0.69	+0.2
4,444,401	-		GFF4447	0.69	+0.2
4,444,407	-		GFF4447	0.69	-1.3
4,444,420	+		GFF4447	0.71	+0.2
4,444,441	+		GFF4447	0.74	+1.2
4,444,441	+		GFF4447	0.74	+0.4
4,444,441	+		GFF4447	0.74	-1.0
4,444,446	+		GFF4447	0.75	-0.3
4,444,446	+		GFF4447	0.75	-1.4
4,444,449	-		GFF4447	0.75	-0.7
4,444,449	-		GFF4447	0.75	-0.8
4,444,489	-		GFF4447	0.81	+1.4
4,444,509	+		GFF4447	0.84	+0.3
4,444,512	-		GFF4447	0.84	+1.1
4,444,521	+		GFF4447	0.86	-0.1
4,444,538	+		GFF4447	0.88	-0.1
4,444,538	+		GFF4447	0.88	-0.1
4,444,548	+		GFF4447	0.89	-0.7
4,444,551	-		GFF4447	0.90	+1.3
4,444,560	+				+1.1
4,444,565	+				-1.1
4,444,565	+				+1.4
4,444,565	+				+0.7
4,444,573	-				-0.7
4,444,578	-				-0.2
4,444,583	+				-2.3
4,444,583	+				+1.1
4,444,583	+				+0.4
4,444,591	-				-0.1
4,444,591	-				+0.5
4,444,668	+				-0.5
4,444,674	+				-0.5
4,444,674	+				-0.3
4,444,678	+				+0.7
4,444,678	+				+0.2
4,444,678	+				-0.7
4,444,678	+				-0.8
4,444,682	-				+0.3
4,444,686	-				+0.2
4,444,686	-				+0.6
4,444,686	-				-0.8
4,444,686	-				+1.1
4,444,699	+		GFF4448	0.11	+1.0
4,444,707	-		GFF4448	0.12	+1.2
4,444,714	-		GFF4448	0.13	+0.5
4,444,726	+		GFF4448	0.15	+0.4
4,444,737	+		GFF4448	0.16	-0.5
4,444,741	+		GFF4448	0.17	+1.3
4,444,745	-		GFF4448	0.17	+0.9
4,444,751	+		GFF4448	0.18	+0.4
4,444,751	+		GFF4448	0.18	+1.8
4,444,755	+		GFF4448	0.19	-0.2
4,444,768	+		GFF4448	0.20	+0.4
4,444,768	+		GFF4448	0.20	-0.3
4,444,768	+		GFF4448	0.20	-2.1
4,444,768	+		GFF4448	0.20	-0.4
4,444,768	+		GFF4448	0.20	-0.7
4,444,776	-		GFF4448	0.21	+1.3
4,444,786	-		GFF4448	0.23	+0.6
4,444,803	+		GFF4448	0.25	-0.3
4,444,803	+		GFF4448	0.25	-0.6
4,444,811	-		GFF4448	0.26	+0.2
4,444,811	-		GFF4448	0.26	-0.2
4,444,828	+		GFF4448	0.28	+0.9
4,444,836	-		GFF4448	0.30	+0.4
4,444,853	-		GFF4448	0.32	+0.6
4,444,858	-		GFF4448	0.33	-1.3
4,444,896	+		GFF4448	0.38	+1.1
4,444,954	+		GFF4448	0.46	-2.3
4,444,973	-		GFF4448	0.48	-0.3
4,444,996	-		GFF4448	0.51	+0.3
4,445,001	+		GFF4448	0.52	+1.5
4,445,001	+		GFF4448	0.52	-1.5
4,445,004	-		GFF4448	0.52	+0.1
4,445,009	-		GFF4448	0.53	+1.0
4,445,033	-		GFF4448	0.56	+1.1
4,445,048	+		GFF4448	0.58	+0.3
4,445,053	+		GFF4448	0.59	-0.8
4,445,059	-		GFF4448	0.60	+1.7
4,445,081	+		GFF4448	0.63	+0.7
4,445,083	+		GFF4448	0.63	+0.1
4,445,086	-		GFF4448	0.64	-0.5
4,445,089	-		GFF4448	0.64	+0.9
4,445,089	-		GFF4448	0.64	+0.0
4,445,091	-		GFF4448	0.64	+0.8
4,445,093	+		GFF4448	0.64	+1.1
4,445,093	+		GFF4448	0.64	+0.1
4,445,093	+		GFF4448	0.64	-1.0
4,445,101	-		GFF4448	0.66	+1.8
4,445,101	-		GFF4448	0.66	-0.3
4,445,147	-		GFF4448	0.72	+0.5
4,445,159	-		GFF4448	0.73	-0.5
4,445,186	-		GFF4448	0.77	-1.2
4,445,191	-		GFF4448	0.78	+0.1
4,445,251	+		GFF4448	0.86	-1.5
4,445,261	+		GFF4448	0.87	+1.2
4,445,261	+		GFF4448	0.87	+0.6
4,445,262	+		GFF4448	0.87	-0.9
4,445,269	-		GFF4448	0.88	+0.6
4,445,273	-		GFF4448	0.89	-0.1
4,445,275	+		GFF4448	0.89	+0.9
4,445,283	-				+0.1
4,445,283	-				+1.0
4,445,283	-				-0.1
4,445,385	+				-1.1
4,445,386	+				-0.8
4,445,394	+				+0.3
4,445,401	+				-0.3
4,445,407	-				-1.3
4,445,420	-				-1.5
4,445,434	-		GFF4449	0.10	-0.8
4,445,486	-		GFF4449	0.17	-1.7
4,445,489	+		GFF4449	0.18	-1.3
4,445,494	+		GFF4449	0.18	+1.6
4,445,502	-		GFF4449	0.20	-0.1
4,445,508	+		GFF4449	0.20	+0.4
4,445,513	+		GFF4449	0.21	-0.3
4,445,516	-		GFF4449	0.21	-2.0
4,445,526	+		GFF4449	0.23	-0.2
4,445,537	+		GFF4449	0.24	+0.7
4,445,542	+		GFF4449	0.25	-0.7
4,445,545	-		GFF4449	0.25	-0.3
4,445,557	+		GFF4449	0.27	-0.5
4,445,557	+		GFF4449	0.27	+1.2
4,445,557	+		GFF4449	0.27	-0.5
4,445,557	-		GFF4449	0.27	+0.3
4,445,565	-		GFF4449	0.28	+0.5
4,445,565	-		GFF4449	0.28	-0.2
4,445,565	-		GFF4449	0.28	-1.8
4,445,566	-		GFF4449	0.28	-0.2
4,445,573	-		GFF4449	0.29	-0.7
4,445,615	+		GFF4449	0.35	-0.1
4,445,615	+		GFF4449	0.35	-0.4
4,445,625	+		GFF4449	0.36	-1.3
4,445,633	-		GFF4449	0.37	+0.4
4,445,638	-		GFF4449	0.38	+0.0
4,445,642	+		GFF4449	0.38	-1.9
4,445,681	+		GFF4449	0.44	+0.6
4,445,681	+		GFF4449	0.44	-0.1
4,445,728	+		GFF4449	0.50	-0.6
4,445,736	-		GFF4449	0.51	-2.1
4,445,746	-		GFF4449	0.52	-0.7
4,445,746	-		GFF4449	0.52	+1.0
4,445,781	+		GFF4449	0.57	+0.4
4,445,785	-		GFF4449	0.58	-0.5
4,445,794	-		GFF4449	0.59	+0.5
4,445,799	-		GFF4449	0.60	-0.4
4,445,817	-		GFF4449	0.62	+1.2
4,445,870	+		GFF4449	0.69	-0.3
4,445,870	+		GFF4449	0.69	-1.5
4,445,873	-		GFF4449	0.70	+0.5
4,445,878	-		GFF4449	0.70	+0.2
4,445,931	+		GFF4449	0.77	+0.7
4,445,954	-		GFF4449	0.81	+0.3
4,445,963	-		GFF4449	0.82	+0.3
4,445,963	-		GFF4449	0.82	+1.3
4,445,972	-		GFF4449	0.83	+0.5
4,446,002	-		GFF4449	0.87	+0.8
4,446,009	+		GFF4449	0.88	+1.3
4,446,017	-		GFF4449	0.89	-0.3
4,446,040	+				+0.4
4,446,040	-				-0.2
4,446,113	-				+0.7
4,446,113	-				+1.3
4,446,131	-				-0.8
4,446,132	+				+0.3
4,446,150	-				+0.5
4,446,165	+				-0.7
4,446,165	+				+0.5
4,446,167	+				+0.0
4,446,175	-				-0.1
4,446,186	+				+0.7
4,446,228	-				+0.7
4,446,236	-				-0.1
4,446,261	+				+0.5
4,446,269	-				-0.8
4,446,282	+		GFF4450	0.10	-2.5
4,446,292	+		GFF4450	0.12	-0.2
4,446,292	+		GFF4450	0.12	+0.8
4,446,292	+		GFF4450	0.12	-1.8
4,446,294	-		GFF4450	0.13	-1.6
4,446,313	-		GFF4450	0.17	-1.0
4,446,317	+		GFF4450	0.18	-0.3
4,446,323	-		GFF4450	0.19	-0.9
4,446,325	-		GFF4450	0.20	-1.3
4,446,325	-		GFF4450	0.20	+0.9
4,446,332	-		GFF4450	0.21	+0.9
4,446,332	-		GFF4450	0.21	+0.0
4,446,341	+		GFF4450	0.24	-0.3