Strain Fitness in Sphingobium sp. HT1-2 around GFF4429

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,422,836	-		GFF4427	0.16	+0.2
4,422,836	-		GFF4427	0.16	-1.2
4,422,855	+		GFF4427	0.19	-0.6
4,422,855	+		GFF4427	0.19	-1.0
4,422,863	-		GFF4427	0.20	-1.1
4,422,863	-		GFF4427	0.20	-0.5
4,422,863	-		GFF4427	0.20	-0.6
4,422,873	-		GFF4427	0.21	-2.5
4,422,877	+		GFF4427	0.22	+0.5
4,422,883	-		GFF4427	0.23	-0.5
4,422,899	+		GFF4427	0.25	-0.7
4,422,909	+		GFF4427	0.26	-0.8
4,422,909	-		GFF4427	0.26	+0.3
4,422,919	-		GFF4427	0.28	+0.3
4,422,919	-		GFF4427	0.28	-1.4
4,422,921	+		GFF4427	0.28	-1.5
4,422,936	+		GFF4427	0.30	+0.1
4,422,936	+		GFF4427	0.30	-1.8
4,422,943	+		GFF4427	0.31	-1.4
4,422,943	+		GFF4427	0.31	-0.4
4,422,944	-		GFF4427	0.31	+0.0
4,422,948	+		GFF4427	0.32	-0.9
4,422,951	-		GFF4427	0.32	-1.0
4,422,951	-		GFF4427	0.32	-0.1
4,422,956	-		GFF4427	0.33	-1.7
4,422,966	-		GFF4427	0.34	+0.0
4,422,977	+		GFF4427	0.36	+0.3
4,422,980	+		GFF4427	0.36	+0.3
4,422,987	+		GFF4427	0.37	+1.0
4,422,987	+		GFF4427	0.37	-1.0
4,422,987	+		GFF4427	0.37	-0.4
4,422,995	-		GFF4427	0.38	-1.3
4,422,995	-		GFF4427	0.38	-0.6
4,422,995	-		GFF4427	0.38	+0.1
4,422,995	-		GFF4427	0.38	-1.0
4,423,000	-		GFF4427	0.39	+0.2
4,423,022	+		GFF4427	0.42	-1.0
4,423,023	+		GFF4427	0.42	-1.2
4,423,023	+		GFF4427	0.42	+1.9
4,423,023	+		GFF4427	0.42	+0.1
4,423,031	-		GFF4427	0.43	-0.0
4,423,031	-		GFF4427	0.43	-0.3
4,423,031	-		GFF4427	0.43	-0.7
4,423,031	-		GFF4427	0.43	-2.2
4,423,031	-		GFF4427	0.43	+0.6
4,423,055	+		GFF4427	0.46	-2.1
4,423,058	-		GFF4427	0.47	+0.1
4,423,060	+		GFF4427	0.47	-0.6
4,423,060	+		GFF4427	0.47	-1.2
4,423,063	-		GFF4427	0.47	-0.3
4,423,065	+		GFF4427	0.48	+0.4
4,423,065	+		GFF4427	0.48	-0.9
4,423,065	+		GFF4427	0.48	-2.4
4,423,068	-		GFF4427	0.48	-1.7
4,423,068	-		GFF4427	0.48	+0.2
4,423,068	-		GFF4427	0.48	+0.4
4,423,073	-		GFF4427	0.49	-0.8
4,423,073	-		GFF4427	0.49	-0.2
4,423,073	-		GFF4427	0.49	+0.1
4,423,078	-		GFF4427	0.50	-1.3
4,423,085	+		GFF4427	0.50	-0.4
4,423,085	-		GFF4427	0.50	-2.9
4,423,091	-		GFF4427	0.51	+1.4
4,423,091	-		GFF4427	0.51	-1.1
4,423,107	-		GFF4427	0.53	-0.3
4,423,127	+		GFF4427	0.56	-0.8
4,423,127	+		GFF4427	0.56	-0.4
4,423,135	-		GFF4427	0.57	+0.5
4,423,138	-		GFF4427	0.58	-0.9
4,423,140	-		GFF4427	0.58	+0.6
4,423,141	+		GFF4427	0.58	-2.3
4,423,141	+		GFF4427	0.58	-2.1
4,423,148	-		GFF4427	0.59	-1.0
4,423,149	-		GFF4427	0.59	-0.8
4,423,165	-		GFF4427	0.61	-0.3
4,423,179	+		GFF4427	0.63	-0.2
4,423,179	+		GFF4427	0.63	-0.7
4,423,184	+		GFF4427	0.64	-1.3
4,423,187	-		GFF4427	0.64	-0.2
4,423,192	-		GFF4427	0.65	+0.4
4,423,198	+		GFF4427	0.66	-0.1
4,423,198	+		GFF4427	0.66	-0.1
4,423,198	+		GFF4427	0.66	-0.1
4,423,214	+		GFF4427	0.68	-0.5
4,423,216	-		GFF4427	0.68	-1.7
4,423,217	+		GFF4427	0.69	-1.1
4,423,225	-		GFF4427	0.70	+0.3
4,423,253	-		GFF4427	0.74	-0.8
4,423,255	+		GFF4427	0.74	+0.5
4,423,265	+		GFF4427	0.75	+0.1
4,423,265	-		GFF4427	0.75	+0.1
4,423,274	-		GFF4427	0.76	-0.0
4,423,274	-		GFF4427	0.76	-1.7
4,423,289	+		GFF4427	0.78	-0.2
4,423,295	-		GFF4427	0.79	-0.4
4,423,297	-		GFF4427	0.80	-0.3
4,423,299	-		GFF4427	0.80	-0.5
4,423,326	-		GFF4427	0.84	-1.9
4,423,342	+		GFF4427	0.86	+0.7
4,423,343	-		GFF4427	0.86	-1.5
4,423,364	-		GFF4427	0.89	+0.3
4,423,366	+		GFF4427	0.89	+0.1
4,423,381	+				-0.4
4,423,381	+				-2.1
4,423,381	+				+0.2
4,423,389	-				-0.0
4,423,389	-				+0.6
4,423,389	-				+0.2
4,423,420	+				-1.7
4,423,428	-				+0.7
4,423,428	-				-0.1
4,423,450	+				-1.1
4,423,450	+				-2.0
4,423,450	+				-1.7
4,423,458	-				-0.1
4,423,458	-				+0.9
4,423,458	-				-0.1
4,423,458	-				-0.1
4,423,458	-				+0.6
4,423,467	+				+0.8
4,423,467	+				+0.2
4,423,470	-				+0.9
4,423,470	-				+0.2
4,423,470	-				-1.5
4,423,470	-				-1.1
4,423,472	+				+0.3
4,423,510	+		GFF4428	0.24	-0.8
4,423,518	-		GFF4428	0.27	+0.8
4,423,539	-		GFF4428	0.35	-1.1
4,423,542	+		GFF4428	0.36	-1.0
4,423,570	+		GFF4428	0.47	-0.1
4,423,573	+		GFF4428	0.48	-1.5
4,423,575	+		GFF4428	0.49	+0.6
4,423,575	+		GFF4428	0.49	-0.2
4,423,579	+		GFF4428	0.50	-0.2
4,423,580	+		GFF4428	0.51	+0.0
4,423,583	-		GFF4428	0.52	-0.5
4,423,583	-		GFF4428	0.52	-1.1
4,423,583	-		GFF4428	0.52	+1.4
4,423,583	-		GFF4428	0.52	+1.5
4,423,583	-		GFF4428	0.52	-1.3
4,423,590	-		GFF4428	0.54	+0.2
4,423,607	+		GFF4428	0.61	+0.3
4,423,607	+		GFF4428	0.61	-0.6
4,423,607	+		GFF4428	0.61	+0.6
4,423,615	-		GFF4428	0.64	-0.3
4,423,615	-		GFF4428	0.64	+0.1
4,423,615	-		GFF4428	0.64	-0.7
4,423,615	-		GFF4428	0.64	-0.1
4,423,615	-		GFF4428	0.64	-0.3
4,423,622	+		GFF4428	0.67	-2.2
4,423,630	-		GFF4428	0.70	-1.8
4,423,631	+		GFF4428	0.70	-0.4
4,423,634	-		GFF4428	0.71	+0.4
4,423,639	-		GFF4428	0.73	-1.6
4,423,650	+		GFF4428	0.77	+1.1
4,423,650	+		GFF4428	0.77	+0.1
4,423,654	+		GFF4428	0.79	-1.2
4,423,654	+		GFF4428	0.79	-0.9
4,423,654	+		GFF4428	0.79	-0.3
4,423,654	+		GFF4428	0.79	+0.4
4,423,654	+		GFF4428	0.79	-1.2
4,423,662	-		GFF4428	0.82	+0.6
4,423,665	+		GFF4428	0.83	+0.3
4,423,697	+				-0.3
4,423,705	-				-0.2
4,423,707	+				-1.5
4,423,715	-				-1.0
4,423,715	-				-0.8
4,423,725	-				-0.3
4,423,767	+				+0.5
4,423,784	+				-1.3
4,423,799	-				+0.2
4,423,814	-				+1.1
4,423,835	+				-0.1
4,423,837	-				-0.7
4,423,843	-				+1.1
4,423,876	-				-0.6
4,423,878	+				-0.5
4,423,880	-				-0.4
4,423,898	+				+1.2
4,423,927	-				-0.3
4,423,927	-				-1.9
4,423,928	+				-1.7
4,423,928	+				-0.7
4,423,936	+		GFF4429	0.11	+1.5
4,423,939	-		GFF4429	0.11	+1.5
4,423,968	+		GFF4429	0.14	-0.5
4,423,976	-		GFF4429	0.15	-0.5
4,423,993	-		GFF4429	0.16	+0.4
4,423,993	-		GFF4429	0.16	-0.4
4,423,994	+		GFF4429	0.17	-0.3
4,424,019	+		GFF4429	0.19	-0.5
4,424,021	+		GFF4429	0.19	-1.0
4,424,027	-		GFF4429	0.20	-0.2
4,424,028	-		GFF4429	0.20	-0.7
4,424,033	-		GFF4429	0.20	-0.1
4,424,033	-		GFF4429	0.20	-0.4
4,424,036	+		GFF4429	0.21	-0.4
4,424,037	+		GFF4429	0.21	-2.1
4,424,048	+		GFF4429	0.22	+0.3
4,424,048	+		GFF4429	0.22	-0.3
4,424,056	-		GFF4429	0.23	+0.4
4,424,056	-		GFF4429	0.23	+0.7
4,424,056	-		GFF4429	0.23	-0.6
4,424,056	-		GFF4429	0.23	-1.1
4,424,064	-		GFF4429	0.24	+0.2
4,424,070	-		GFF4429	0.24	+0.4
4,424,079	+		GFF4429	0.25	+0.7
4,424,083	-		GFF4429	0.26	-0.1
4,424,085	+		GFF4429	0.26	-2.5
4,424,095	+		GFF4429	0.27	-0.1
4,424,102	+		GFF4429	0.28	-0.1
4,424,120	+		GFF4429	0.29	-1.1
4,424,121	-		GFF4429	0.29	+0.0
4,424,130	-		GFF4429	0.30	-1.8
4,424,146	-		GFF4429	0.32	-0.7
4,424,148	+		GFF4429	0.32	-0.1
4,424,159	+		GFF4429	0.33	-1.5
4,424,162	+		GFF4429	0.34	-0.9
4,424,162	+		GFF4429	0.34	-0.2
4,424,167	+		GFF4429	0.34	+0.4
4,424,167	+		GFF4429	0.34	-1.3
4,424,167	+		GFF4429	0.34	-1.2
4,424,167	+		GFF4429	0.34	-0.6
4,424,167	+		GFF4429	0.34	-1.8
4,424,167	+		GFF4429	0.34	+0.4
4,424,167	+		GFF4429	0.34	+0.4
4,424,167	+		GFF4429	0.34	-2.6
4,424,167	+		GFF4429	0.34	-1.2
4,424,167	+		GFF4429	0.34	+1.3
4,424,167	+		GFF4429	0.34	-2.6
4,424,167	+		GFF4429	0.34	+0.1
4,424,167	+		GFF4429	0.34	-1.9
4,424,167	+		GFF4429	0.34	+0.4
4,424,167	+		GFF4429	0.34	+0.5
4,424,167	+		GFF4429	0.34	+0.7
4,424,167	+		GFF4429	0.34	+1.4
4,424,175	-		GFF4429	0.35	-2.5
4,424,175	-		GFF4429	0.35	-0.9
4,424,175	-		GFF4429	0.35	-0.7
4,424,175	-		GFF4429	0.35	-2.2
4,424,175	-		GFF4429	0.35	-0.1
4,424,175	-		GFF4429	0.35	-0.6
4,424,175	-		GFF4429	0.35	-0.2
4,424,175	-		GFF4429	0.35	-1.3
4,424,175	-		GFF4429	0.35	+0.9
4,424,175	-		GFF4429	0.35	+1.2
4,424,175	-		GFF4429	0.35	+0.2
4,424,175	-		GFF4429	0.35	-1.4
4,424,175	-		GFF4429	0.35	+1.0
4,424,186	-		GFF4429	0.36	-1.7
4,424,186	-		GFF4429	0.36	+0.5
4,424,187	+		GFF4429	0.36	-0.9
4,424,187	+		GFF4429	0.36	-1.6
4,424,187	+		GFF4429	0.36	+0.0
4,424,195	-		GFF4429	0.37	+2.0
4,424,195	-		GFF4429	0.37	-0.9
4,424,195	-		GFF4429	0.37	+0.5
4,424,200	-		GFF4429	0.38	-0.5
4,424,204	+		GFF4429	0.38	+0.1
4,424,220	+		GFF4429	0.40	-0.7
4,424,220	+		GFF4429	0.40	-1.4
4,424,220	+		GFF4429	0.40	+0.2
4,424,220	+		GFF4429	0.40	+0.3
4,424,220	+		GFF4429	0.40	-0.7
4,424,220	+		GFF4429	0.40	-0.2
4,424,220	+		GFF4429	0.40	+1.2
4,424,220	+		GFF4429	0.40	+0.5
4,424,220	+		GFF4429	0.40	+0.3
4,424,220	+		GFF4429	0.40	-2.5
4,424,228	-		GFF4429	0.40	+0.5
4,424,228	-		GFF4429	0.40	-0.2
4,424,228	-		GFF4429	0.40	-2.1
4,424,228	-		GFF4429	0.40	+0.2
4,424,228	-		GFF4429	0.40	-0.1
4,424,228	-		GFF4429	0.40	-1.1
4,424,228	-		GFF4429	0.40	-0.1
4,424,239	+		GFF4429	0.41	-0.8
4,424,239	+		GFF4429	0.41	+0.7
4,424,239	+		GFF4429	0.41	+0.2
4,424,247	-		GFF4429	0.42	-0.8
4,424,249	+		GFF4429	0.43	+0.8
4,424,251	+		GFF4429	0.43	-1.5
4,424,252	+		GFF4429	0.43	-0.2
4,424,252	+		GFF4429	0.43	+0.1
4,424,260	-		GFF4429	0.44	+0.3
4,424,278	-		GFF4429	0.45	-1.0
4,424,278	-		GFF4429	0.45	-0.9
4,424,288	+		GFF4429	0.46	-1.7
4,424,288	+		GFF4429	0.46	-0.5
4,424,307	-		GFF4429	0.48	-0.2
4,424,315	+		GFF4429	0.49	-2.5
4,424,323	-		GFF4429	0.50	-0.0
4,424,329	+		GFF4429	0.51	-0.2
4,424,341	+		GFF4429	0.52	-0.0
4,424,349	-		GFF4429	0.53	-0.6
4,424,380	+		GFF4429	0.56	-0.4
4,424,380	+		GFF4429	0.56	+0.1
4,424,388	-		GFF4429	0.57	+0.4
4,424,390	+		GFF4429	0.57	-1.6
4,424,400	+		GFF4429	0.58	-1.9
4,424,403	-		GFF4429	0.58	+0.3
4,424,409	+		GFF4429	0.59	-0.7
4,424,422	-		GFF4429	0.60	-1.3
4,424,429	+		GFF4429	0.61	-0.6
4,424,434	+		GFF4429	0.61	-0.3
4,424,440	+		GFF4429	0.62	-2.6
4,424,440	+		GFF4429	0.62	-0.6
4,424,440	+		GFF4429	0.62	-1.1
4,424,440	+		GFF4429	0.62	-1.1
4,424,442	-		GFF4429	0.62	-1.6
4,424,442	-		GFF4429	0.62	-0.1
4,424,448	-		GFF4429	0.63	+0.3
4,424,448	-		GFF4429	0.63	-1.0
4,424,450	+		GFF4429	0.63	-0.3
4,424,457	+		GFF4429	0.64	+0.4
4,424,462	+		GFF4429	0.64	+1.1
4,424,465	-		GFF4429	0.65	-0.5
4,424,465	-		GFF4429	0.65	-1.3
4,424,475	-		GFF4429	0.66	-0.9
4,424,498	+		GFF4429	0.68	-0.0
4,424,499	-		GFF4429	0.68	+0.3
4,424,513	+		GFF4429	0.69	-0.9
4,424,566	-		GFF4429	0.75	-2.1
4,424,580	+		GFF4429	0.76	+0.5
4,424,580	+		GFF4429	0.76	-0.6
4,424,588	-		GFF4429	0.77	-1.8
4,424,595	+		GFF4429	0.78	-0.5
4,424,595	+		GFF4429	0.78	-1.8
4,424,595	+		GFF4429	0.78	-0.2
4,424,595	+		GFF4429	0.78	+0.6
4,424,595	+		GFF4429	0.78	+0.7
4,424,603	-		GFF4429	0.79	+0.7
4,424,603	-		GFF4429	0.79	+0.9
4,424,613	-		GFF4429	0.80	+1.3
4,424,631	-		GFF4429	0.81	+0.1
4,424,642	+		GFF4429	0.83	+0.3
4,424,670	+		GFF4429	0.85	-0.9
4,424,678	-		GFF4429	0.86	+0.5
4,424,693	+		GFF4429	0.88	-1.3
4,424,694	+		GFF4429	0.88	+0.3
4,424,702	-		GFF4429	0.89	+0.8
4,424,704	+		GFF4429	0.89	+0.1
4,424,704	+		GFF4429	0.89	-0.2
4,424,710	+		GFF4429	0.90	-1.5
4,424,710	+		GFF4429	0.90	-0.1
4,424,712	-		GFF4429	0.90	-2.5
4,424,718	-				+0.1
4,424,739	+				+0.2
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