Strain Fitness in Sphingobium sp. HT1-2 around GFF4413

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,409,914	+		GFF4411	0.47	+0.6
4,409,919	+		GFF4411	0.48	-0.9
4,409,921	+		GFF4411	0.48	-1.2
4,409,921	+		GFF4411	0.48	-1.3
4,409,922	-		GFF4411	0.49	+1.3
4,409,927	-		GFF4411	0.49	+0.7
4,409,927	-		GFF4411	0.49	-0.6
4,409,929	-		GFF4411	0.50	+0.4
4,409,929	-		GFF4411	0.50	-1.8
4,409,948	-		GFF4411	0.52	-2.8
4,409,964	+		GFF4411	0.55	-2.7
4,409,993	+		GFF4411	0.59	+0.2
4,410,001	-		GFF4411	0.60	+1.3
4,410,023	+		GFF4411	0.63	+0.3
4,410,038	+		GFF4411	0.66	+0.7
4,410,072	+		GFF4411	0.70	+0.3
4,410,072	+		GFF4411	0.70	-1.3
4,410,080	-		GFF4411	0.72	-0.7
4,410,080	-		GFF4411	0.72	-1.2
4,410,080	-		GFF4411	0.72	+0.1
4,410,080	-		GFF4411	0.72	-0.0
4,410,110	-		GFF4411	0.76	-0.8
4,410,122	+		GFF4411	0.78	-0.4
4,410,147	+		GFF4411	0.81	-2.1
4,410,147	+		GFF4411	0.81	+1.7
4,410,147	+		GFF4411	0.81	-0.3
4,410,147	+		GFF4411	0.81	+0.7
4,410,147	+		GFF4411	0.81	-0.4
4,410,155	-		GFF4411	0.83	-3.0
4,410,155	-		GFF4411	0.83	+0.2
4,410,155	-		GFF4411	0.83	-0.5
4,410,200	+		GFF4411	0.89	-0.4
4,410,200	+		GFF4411	0.89	+2.3
4,410,200	+		GFF4411	0.89	+0.1
4,410,200	+		GFF4411	0.89	+0.7
4,410,200	+		GFF4411	0.89	-0.1
4,410,208	-				-2.2
4,410,267	-				+1.3
4,410,277	+				-0.2
4,410,285	-				+0.6
4,410,352	+		GFF4412	0.13	-0.4
4,410,367	-		GFF4412	0.16	-0.7
4,410,378	+		GFF4412	0.19	-0.6
4,410,378	+		GFF4412	0.19	+0.6
4,410,378	+		GFF4412	0.19	-1.4
4,410,378	+		GFF4412	0.19	+0.3
4,410,378	+		GFF4412	0.19	+0.1
4,410,378	+		GFF4412	0.19	-0.7
4,410,378	+		GFF4412	0.19	-0.3
4,410,378	+		GFF4412	0.19	+0.6
4,410,378	+		GFF4412	0.19	+0.0
4,410,378	+		GFF4412	0.19	+0.9
4,410,378	+		GFF4412	0.19	-0.4
4,410,386	-		GFF4412	0.21	+1.5
4,410,386	-		GFF4412	0.21	+0.5
4,410,386	-		GFF4412	0.21	-0.3
4,410,386	-		GFF4412	0.21	+0.1
4,410,386	-		GFF4412	0.21	-0.6
4,410,386	-		GFF4412	0.21	+0.8
4,410,386	-		GFF4412	0.21	+0.9
4,410,386	-		GFF4412	0.21	+0.2
4,410,386	-		GFF4412	0.21	+1.1
4,410,423	+		GFF4412	0.31	+0.5
4,410,423	+		GFF4412	0.31	-0.0
4,410,423	+		GFF4412	0.31	-0.2
4,410,431	-		GFF4412	0.33	+1.1
4,410,431	-		GFF4412	0.33	+1.0
4,410,431	-		GFF4412	0.33	-1.0
4,410,442	+		GFF4412	0.35	+1.6
4,410,496	-		GFF4412	0.49	+0.7
4,410,501	-		GFF4412	0.50	+0.1
4,410,503	+		GFF4412	0.51	-2.3
4,410,507	+		GFF4412	0.52	-1.8
4,410,513	+		GFF4412	0.53	+0.4
4,410,513	+		GFF4412	0.53	+0.8
4,410,513	+		GFF4412	0.53	+1.1
4,410,513	+		GFF4412	0.53	+0.4
4,410,513	+		GFF4412	0.53	+0.5
4,410,513	+		GFF4412	0.53	-0.0
4,410,521	-		GFF4412	0.55	-0.9
4,410,521	-		GFF4412	0.55	+0.2
4,410,521	-		GFF4412	0.55	+0.5
4,410,521	-		GFF4412	0.55	+1.2
4,410,526	-		GFF4412	0.57	+0.4
4,410,528	-		GFF4412	0.57	+0.6
4,410,564	+		GFF4412	0.66	-0.3
4,410,572	+		GFF4412	0.68	+0.6
4,410,574	+		GFF4412	0.69	-1.5
4,410,582	-		GFF4412	0.71	-0.4
4,410,624	-		GFF4412	0.81	-0.0
4,410,638	+		GFF4412	0.85	-0.9
4,410,662	+				-0.3
4,410,714	-				+1.3
4,410,777	-				+0.8
4,410,797	+				+0.3
4,410,797	+				+0.5
4,410,816	-				-0.2
4,410,832	+				-0.8
4,410,840	-				+0.2
4,410,885	+				-0.5
4,410,887	-				+0.2
4,410,893	-				-0.7
4,410,907	+				-0.7
4,410,907	+				+0.7
4,410,907	+				-1.7
4,410,907	+				+0.0
4,410,907	+				+0.5
4,410,915	-				+0.5
4,410,915	-				+0.7
4,410,915	-				-1.9
4,410,915	-				+0.7
4,410,915	-				-0.7
4,410,915	-				+1.1
4,410,915	-				-0.7
4,410,928	+		GFF4413	0.10	-0.7
4,410,960	-		GFF4413	0.19	-2.4
4,410,963	+		GFF4413	0.20	-0.5
4,410,969	+		GFF4413	0.21	+0.4
4,410,969	+		GFF4413	0.21	-1.0
4,410,969	+		GFF4413	0.21	-0.2
4,410,969	+		GFF4413	0.21	+2.3
4,410,977	-		GFF4413	0.23	+0.8
4,410,994	+		GFF4413	0.28	-1.7
4,411,002	+		GFF4413	0.30	-0.2
4,411,002	-		GFF4413	0.30	-0.1
4,411,015	-		GFF4413	0.33	+0.5
4,411,036	+		GFF4413	0.39	+0.2
4,411,036	+		GFF4413	0.39	+0.3
4,411,038	+		GFF4413	0.39	+0.3
4,411,044	-		GFF4413	0.41	+0.5
4,411,087	-		GFF4413	0.52	+0.3
4,411,089	-		GFF4413	0.53	-0.3
4,411,094	-		GFF4413	0.54	-1.3
4,411,111	-		GFF4413	0.59	-0.8
4,411,111	-		GFF4413	0.59	-1.0
4,411,166	-		GFF4413	0.73	-0.3
4,411,223	+		GFF4413	0.88	-0.0
4,411,249	+				-0.7
4,411,249	+				-1.3
4,411,253	+				-0.3
4,411,253	+				-0.9
4,411,253	+				-0.4
4,411,253	+				-0.0
4,411,253	+				-0.5
4,411,253	+				-0.2
4,411,257	-				+1.1
4,411,257	-				-1.2
4,411,263	+				+1.0
4,411,263	+				+0.4
4,411,263	+				+0.3
4,411,263	+				-0.4
4,411,270	+				-0.8
4,411,271	-				+0.5
4,411,271	-				-1.2
4,411,278	-				+0.3
4,411,304	+				+0.9
4,411,338	-				+0.4
4,411,369	-				-0.3
4,411,374	-				+1.6
4,411,374	-				+1.0
4,411,378	+				+0.8
4,411,378	+				-0.4
4,411,386	-				-0.7
4,411,394	+				+0.3
4,411,407	-				-0.8
4,411,449	-				+0.3
4,411,470	-				-0.7
4,411,473	+				+0.4
4,411,473	+				+0.9
4,411,473	+				+0.3
4,411,478	+				-0.3
4,411,481	-				+0.2
4,411,481	-				+1.0
4,411,481	-				+0.6
4,411,481	-				+1.3
4,411,505	+				-0.0
4,411,527	+				+0.4
4,411,534	+		GFF4414	0.11	-1.4
4,411,534	+		GFF4414	0.11	+0.1
4,411,542	-		GFF4414	0.11	-1.6
4,411,546	+		GFF4414	0.12	+0.6
4,411,631	-		GFF4414	0.20	-1.3
4,411,648	-		GFF4414	0.21	+0.5
4,411,658	-		GFF4414	0.22	+0.3
4,411,669	-		GFF4414	0.23	+0.6
4,411,712	-		GFF4414	0.27	-1.5
4,411,747	+		GFF4414	0.30	-0.4
4,411,755	-		GFF4414	0.31	-0.7
4,411,763	+		GFF4414	0.32	+0.4
4,411,769	-		GFF4414	0.32	+1.3
4,411,769	-		GFF4414	0.32	-0.6
4,411,855	+		GFF4414	0.40	+0.1
4,411,855	+		GFF4414	0.40	-0.6
4,411,857	+		GFF4414	0.41	-0.0
4,411,868	+		GFF4414	0.42	-0.8
4,411,890	-		GFF4414	0.44	-0.3
4,411,936	-		GFF4414	0.48	+0.2
4,411,946	+		GFF4414	0.49	-0.4
4,411,949	-		GFF4414	0.49	+0.1
4,411,950	+		GFF4414	0.49	+0.9
4,411,950	+		GFF4414	0.49	-0.7
4,411,967	+		GFF4414	0.51	-0.5
4,411,985	-		GFF4414	0.52	-1.0
4,412,017	+		GFF4414	0.55	-0.3
4,412,017	+		GFF4414	0.55	-1.2
4,412,017	+		GFF4414	0.55	+0.4
4,412,017	+		GFF4414	0.55	-0.3
4,412,017	+		GFF4414	0.55	+0.2
4,412,017	+		GFF4414	0.55	-0.4
4,412,017	+		GFF4414	0.55	-0.3
4,412,017	+		GFF4414	0.55	-0.1
4,412,017	+		GFF4414	0.55	+0.7
4,412,025	-		GFF4414	0.56	-1.1
4,412,025	-		GFF4414	0.56	-0.1
4,412,025	-		GFF4414	0.56	+0.0
4,412,025	-		GFF4414	0.56	+0.3
4,412,025	-		GFF4414	0.56	+0.6
4,412,025	-		GFF4414	0.56	+1.0
4,412,025	-		GFF4414	0.56	-0.6
4,412,026	-		GFF4414	0.56	-0.4
4,412,039	+		GFF4414	0.57	-0.8
4,412,047	-		GFF4414	0.58	-0.1
4,412,076	-		GFF4414	0.61	-0.7
4,412,076	-		GFF4414	0.61	-1.8
4,412,076	-		GFF4414	0.61	+0.3
4,412,080	+		GFF4414	0.61	-0.6
4,412,088	+		GFF4414	0.62	-0.7
4,412,091	-		GFF4414	0.62	-1.6
4,412,095	+		GFF4414	0.63	-1.0
4,412,095	+		GFF4414	0.63	-0.1
4,412,095	+		GFF4414	0.63	-0.8
4,412,103	-		GFF4414	0.63	-1.3
4,412,104	-		GFF4414	0.64	-1.9
4,412,107	+		GFF4414	0.64	+1.0
4,412,107	+		GFF4414	0.64	-0.2
4,412,107	+		GFF4414	0.64	+0.6
4,412,107	+		GFF4414	0.64	+1.4
4,412,110	-		GFF4414	0.64	-0.0
4,412,115	-		GFF4414	0.65	+0.3
4,412,124	+		GFF4414	0.65	-0.5
4,412,139	-		GFF4414	0.67	+0.7
4,412,139	-		GFF4414	0.67	+0.5
4,412,186	+		GFF4414	0.71	-0.2
4,412,191	+		GFF4414	0.72	-1.0
4,412,191	+		GFF4414	0.72	-0.3
4,412,194	-		GFF4414	0.72	-1.0
4,412,199	-		GFF4414	0.72	-0.2
4,412,224	-		GFF4414	0.75	-0.8
4,412,224	-		GFF4414	0.75	+0.8
4,412,224	-		GFF4414	0.75	-0.8
4,412,224	-		GFF4414	0.75	+1.9
4,412,235	+		GFF4414	0.76	-1.4
4,412,235	+		GFF4414	0.76	-1.3
4,412,235	+		GFF4414	0.76	-0.1
4,412,249	+		GFF4414	0.77	+1.3
4,412,254	+		GFF4414	0.77	+0.5
4,412,254	+		GFF4414	0.77	+0.6
4,412,254	+		GFF4414	0.77	-1.5
4,412,254	+		GFF4414	0.77	+1.4
4,412,262	-		GFF4414	0.78	+1.1
4,412,262	-		GFF4414	0.78	-0.5
4,412,262	-		GFF4414	0.78	-0.7