Strain Fitness in Sphingobium sp. HT1-2 around GFF4412

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,409,312	+				+0.2
4,409,317	+				+0.0
4,409,317	+				-0.5
4,409,317	+				-1.1
4,409,355	-		GFF4410	0.15	-1.7
4,409,365	-		GFF4410	0.19	-2.4
4,409,367	+		GFF4410	0.19	-0.7
4,409,468	-		GFF4410	0.56	-1.0
4,409,482	-		GFF4410	0.62	-0.5
4,409,482	-		GFF4410	0.62	-0.5
4,409,494	-		GFF4410	0.66	-0.4
4,409,496	-		GFF4410	0.67	-0.5
4,409,499	+		GFF4410	0.68	+0.7
4,409,512	-		GFF4410	0.73	-0.3
4,409,513	-		GFF4410	0.73	+0.5
4,409,532	+		GFF4410	0.80	-1.6
4,409,534	+		GFF4410	0.81	-1.8
4,409,542	-		GFF4410	0.84	-1.5
4,409,542	-		GFF4410	0.84	-0.2
4,409,542	-		GFF4410	0.84	+0.1
4,409,551	+		GFF4410	0.87	-0.7
4,409,551	+		GFF4410	0.87	+0.6
4,409,551	+		GFF4410	0.87	+0.4
4,409,559	-				+0.5
4,409,559	-				-0.1
4,409,559	-				+0.8
4,409,577	-				-0.4
4,409,581	+				-0.2
4,409,592	-				+0.3
4,409,592	-				-0.4
4,409,592	-				+0.9
4,409,594	-				-0.8
4,409,603	+				-2.3
4,409,617	+				-0.9
4,409,617	+				+0.1
4,409,617	+				-1.7
4,409,617	+				+0.1
4,409,617	+				-0.5
4,409,623	-				-0.1
4,409,625	-				-0.5
4,409,625	-				-0.3
4,409,625	-				+0.8
4,409,630	-				-0.2
4,409,630	-				-1.8
4,409,645	-				+1.0
4,409,665	-		GFF4411	0.11	-2.8
4,409,683	-		GFF4411	0.14	-1.1
4,409,693	+		GFF4411	0.15	-1.3
4,409,698	-		GFF4411	0.16	-0.7
4,409,727	+		GFF4411	0.20	-0.3
4,409,727	+		GFF4411	0.20	-1.6
4,409,727	+		GFF4411	0.20	-1.1
4,409,728	-		GFF4411	0.20	-0.3
4,409,730	-		GFF4411	0.21	-0.4
4,409,730	-		GFF4411	0.21	+1.2
4,409,737	+		GFF4411	0.22	+0.4
4,409,737	+		GFF4411	0.22	+0.1
4,409,737	+		GFF4411	0.22	-0.8
4,409,737	+		GFF4411	0.22	+0.5
4,409,737	+		GFF4411	0.22	-0.6
4,409,737	+		GFF4411	0.22	-1.4
4,409,737	+		GFF4411	0.22	-0.5
4,409,739	+		GFF4411	0.22	+0.5
4,409,745	+		GFF4411	0.23	-0.5
4,409,745	+		GFF4411	0.23	-1.3
4,409,745	-		GFF4411	0.23	-1.2
4,409,745	-		GFF4411	0.23	+0.6
4,409,745	-		GFF4411	0.23	-1.2
4,409,745	-		GFF4411	0.23	-1.4
4,409,745	-		GFF4411	0.23	-1.8
4,409,745	-		GFF4411	0.23	-1.7
4,409,755	+		GFF4411	0.24	-0.9
4,409,755	+		GFF4411	0.24	-0.1
4,409,755	+		GFF4411	0.24	-1.4
4,409,755	+		GFF4411	0.24	-0.9
4,409,755	+		GFF4411	0.24	+0.0
4,409,755	+		GFF4411	0.24	-0.5
4,409,755	+		GFF4411	0.24	+1.1
4,409,755	+		GFF4411	0.24	+0.1
4,409,755	+		GFF4411	0.24	-1.0
4,409,760	+		GFF4411	0.25	-0.1
4,409,763	-		GFF4411	0.25	-1.7
4,409,763	-		GFF4411	0.25	-0.1
4,409,763	-		GFF4411	0.25	-0.8
4,409,763	-		GFF4411	0.25	+0.1
4,409,763	-		GFF4411	0.25	-1.5
4,409,763	-		GFF4411	0.25	-1.5
4,409,763	-		GFF4411	0.25	+0.1
4,409,765	-		GFF4411	0.26	-1.1
4,409,765	-		GFF4411	0.26	+0.6
4,409,791	+		GFF4411	0.30	-0.3
4,409,799	-		GFF4411	0.31	-1.0
4,409,812	-		GFF4411	0.33	+1.2
4,409,812	-		GFF4411	0.33	-1.3
4,409,816	-		GFF4411	0.33	+0.4
4,409,817	-		GFF4411	0.33	+0.5
4,409,818	+		GFF4411	0.33	+0.3
4,409,818	+		GFF4411	0.33	+0.2
4,409,818	+		GFF4411	0.33	+0.7
4,409,818	+		GFF4411	0.33	+0.3
4,409,818	+		GFF4411	0.33	-0.1
4,409,818	+		GFF4411	0.33	+0.2
4,409,818	+		GFF4411	0.33	+1.3
4,409,818	+		GFF4411	0.33	-0.7
4,409,824	+		GFF4411	0.34	-1.5
4,409,824	+		GFF4411	0.34	-2.1
4,409,824	+		GFF4411	0.34	-0.2
4,409,824	+		GFF4411	0.34	+0.3
4,409,826	-		GFF4411	0.35	-1.1
4,409,826	-		GFF4411	0.35	-1.4
4,409,826	-		GFF4411	0.35	+0.4
4,409,826	-		GFF4411	0.35	-0.2
4,409,826	-		GFF4411	0.35	-1.0
4,409,826	-		GFF4411	0.35	+0.6
4,409,826	-		GFF4411	0.35	+0.3
4,409,830	+		GFF4411	0.35	-2.5
4,409,830	+		GFF4411	0.35	-0.3
4,409,830	+		GFF4411	0.35	+1.1
4,409,830	+		GFF4411	0.35	+0.9
4,409,831	-		GFF4411	0.35	-2.5
4,409,832	+		GFF4411	0.36	-0.7
4,409,832	-		GFF4411	0.36	+0.2
4,409,838	-		GFF4411	0.36	-1.6
4,409,838	-		GFF4411	0.36	-1.5
4,409,838	-		GFF4411	0.36	-0.6
4,409,861	-		GFF4411	0.40	-0.0
4,409,883	+		GFF4411	0.43	-0.1
4,409,914	+		GFF4411	0.47	+0.4
4,409,919	+		GFF4411	0.48	-0.7
4,409,921	+		GFF4411	0.48	-1.4
4,409,921	+		GFF4411	0.48	-1.5
4,409,922	-		GFF4411	0.49	-0.8
4,409,922	-		GFF4411	0.49	+1.1
4,409,927	-		GFF4411	0.49	+0.5
4,409,927	-		GFF4411	0.49	-0.8
4,409,929	-		GFF4411	0.50	+0.3
4,409,929	-		GFF4411	0.50	-2.0
4,409,933	+		GFF4411	0.50	-1.4
4,409,944	+		GFF4411	0.52	-1.0
4,409,948	-		GFF4411	0.52	-3.0
4,409,964	+		GFF4411	0.55	-2.9
4,409,978	-		GFF4411	0.57	+0.1
4,409,993	+		GFF4411	0.59	-0.0
4,410,001	-		GFF4411	0.60	-0.7
4,410,001	-		GFF4411	0.60	+1.1
4,410,033	+		GFF4411	0.65	-1.3
4,410,038	+		GFF4411	0.66	+0.0
4,410,038	+		GFF4411	0.66	+1.0
4,410,038	+		GFF4411	0.66	+0.5
4,410,041	-		GFF4411	0.66	+0.5
4,410,046	-		GFF4411	0.67	-1.0
4,410,046	-		GFF4411	0.67	+0.0
4,410,046	-		GFF4411	0.67	-0.4
4,410,072	+		GFF4411	0.70	-1.2
4,410,072	+		GFF4411	0.70	-1.7
4,410,072	+		GFF4411	0.70	+0.1
4,410,072	+		GFF4411	0.70	-1.5
4,410,079	+		GFF4411	0.71	-1.6
4,410,080	-		GFF4411	0.72	-0.9
4,410,080	-		GFF4411	0.72	-1.4
4,410,080	-		GFF4411	0.72	-0.1
4,410,080	-		GFF4411	0.72	-1.0
4,410,080	-		GFF4411	0.72	-0.2
4,410,104	+		GFF4411	0.75	+1.6
4,410,107	+		GFF4411	0.76	+0.9
4,410,110	-		GFF4411	0.76	-1.0
4,410,122	+		GFF4411	0.78	-0.6
4,410,125	+		GFF4411	0.78	-1.4
4,410,147	+		GFF4411	0.81	-1.1
4,410,147	+		GFF4411	0.81	-1.0
4,410,147	+		GFF4411	0.81	-2.3
4,410,147	+		GFF4411	0.81	-0.5
4,410,147	+		GFF4411	0.81	-0.6
4,410,155	-		GFF4411	0.83	-3.2
4,410,155	-		GFF4411	0.83	-0.9
4,410,155	-		GFF4411	0.83	-0.0
4,410,155	-		GFF4411	0.83	-1.4
4,410,155	-		GFF4411	0.83	-0.7
4,410,200	+		GFF4411	0.89	+0.4
4,410,200	+		GFF4411	0.89	-0.6
4,410,200	+		GFF4411	0.89	-0.1
4,410,200	+		GFF4411	0.89	-0.2
4,410,200	+		GFF4411	0.89	-0.3
4,410,200	+		GFF4411	0.89	+0.9
4,410,200	+		GFF4411	0.89	-0.6
4,410,200	+		GFF4411	0.89	+0.5
4,410,208	-				+0.2
4,410,208	-				-2.3
4,410,208	-				+0.6
4,410,208	-				-2.8
4,410,208	-				-0.1
4,410,208	-				-2.1
4,410,208	-				+0.8
4,410,208	-				+0.8
4,410,232	+				+0.2
4,410,267	-				+1.1
4,410,277	+				-0.9
4,410,277	+				-0.4
4,410,285	-				+0.4
4,410,309	+				+0.7
4,410,316	+				+0.9
4,410,341	+				+0.7
4,410,341	+				-0.6
4,410,352	+		GFF4412	0.13	-0.6
4,410,359	+		GFF4412	0.14	-0.5
4,410,367	-		GFF4412	0.16	-0.9
4,410,378	+		GFF4412	0.19	-1.2
4,410,378	+		GFF4412	0.19	+0.0
4,410,378	+		GFF4412	0.19	+0.2
4,410,378	+		GFF4412	0.19	-0.8
4,410,378	+		GFF4412	0.19	+0.4
4,410,378	+		GFF4412	0.19	-1.6
4,410,378	+		GFF4412	0.19	+0.1
4,410,378	+		GFF4412	0.19	+0.1
4,410,378	+		GFF4412	0.19	-0.0
4,410,378	+		GFF4412	0.19	-0.9
4,410,378	+		GFF4412	0.19	+0.8
4,410,378	+		GFF4412	0.19	-0.5
4,410,378	+		GFF4412	0.19	+0.4
4,410,378	+		GFF4412	0.19	-0.2
4,410,378	+		GFF4412	0.19	+0.7
4,410,378	+		GFF4412	0.19	-0.6
4,410,378	+		GFF4412	0.19	-0.6
4,410,378	+		GFF4412	0.19	-1.5
4,410,386	-		GFF4412	0.21	-1.1
4,410,386	-		GFF4412	0.21	+1.3
4,410,386	-		GFF4412	0.21	+0.4
4,410,386	-		GFF4412	0.21	+0.3
4,410,386	-		GFF4412	0.21	+1.2
4,410,386	-		GFF4412	0.21	-0.5
4,410,386	-		GFF4412	0.21	-1.1
4,410,386	-		GFF4412	0.21	-0.1
4,410,386	-		GFF4412	0.21	-0.1
4,410,386	-		GFF4412	0.21	-0.8
4,410,386	-		GFF4412	0.21	+0.6
4,410,386	-		GFF4412	0.21	+0.1
4,410,386	-		GFF4412	0.21	+0.7
4,410,386	-		GFF4412	0.21	+1.0
4,410,391	-		GFF4412	0.22	-1.4
4,410,391	-		GFF4412	0.22	-0.8
4,410,399	-		GFF4412	0.24	-0.7
4,410,403	+		GFF4412	0.26	-0.4
4,410,421	-		GFF4412	0.30	+0.4
4,410,423	+		GFF4412	0.31	-0.2
4,410,423	+		GFF4412	0.31	-0.4
4,410,426	-		GFF4412	0.31	+0.2
4,410,429	-		GFF4412	0.32	-2.2
4,410,431	-		GFF4412	0.33	+0.9
4,410,431	-		GFF4412	0.33	+0.8
4,410,431	-		GFF4412	0.33	-1.2
4,410,431	-		GFF4412	0.33	-2.1
4,410,431	-		GFF4412	0.33	-1.1
4,410,442	+		GFF4412	0.35	+1.4
4,410,468	+		GFF4412	0.42	-0.8
4,410,488	+		GFF4412	0.47	-0.2
4,410,496	-		GFF4412	0.49	+0.5
4,410,501	-		GFF4412	0.50	-0.1
4,410,503	+		GFF4412	0.51	-2.5
4,410,506	+		GFF4412	0.52	-0.5
4,410,507	+		GFF4412	0.52	-2.0
4,410,507	+		GFF4412	0.52	+0.1
4,410,513	+		GFF4412	0.53	+0.2
4,410,513	+		GFF4412	0.53	+0.7
4,410,513	+		GFF4412	0.53	+0.6
4,410,513	+		GFF4412	0.53	+0.2
4,410,513	+		GFF4412	0.53	+1.0
4,410,513	+		GFF4412	0.53	-0.4
4,410,521	-		GFF4412	0.55	-1.1
4,410,521	-		GFF4412	0.55	-0.0
4,410,521	-		GFF4412	0.55	+0.3
4,410,521	-		GFF4412	0.55	-0.4
4,410,521	-		GFF4412	0.55	+1.0
4,410,521	-		GFF4412	0.55	+0.6
4,410,526	-		GFF4412	0.57	+0.2
4,410,528	-		GFF4412	0.57	+0.4
4,410,564	+		GFF4412	0.66	-0.5
4,410,572	-		GFF4412	0.68	+0.1
4,410,574	+		GFF4412	0.69	-2.1
4,410,574	+		GFF4412	0.69	-1.7
4,410,579	+		GFF4412	0.70	+0.8
4,410,582	-		GFF4412	0.71	-0.6
4,410,582	-		GFF4412	0.71	-2.2
4,410,584	+		GFF4412	0.71	+0.9
4,410,588	+		GFF4412	0.72	-1.6
4,410,607	-		GFF4412	0.77	-0.3
4,410,609	+		GFF4412	0.78	-0.4
4,410,612	-		GFF4412	0.78	+0.3
4,410,624	-		GFF4412	0.81	-0.2
4,410,646	-		GFF4412	0.87	+1.0
4,410,662	+				-0.5
4,410,690	-				-1.4
4,410,699	+				-1.5
4,410,714	-				+1.1
4,410,769	+				+0.0
4,410,769	+				-1.7
4,410,777	-				-0.5
4,410,777	-				+0.6
4,410,782	+				-0.1
4,410,787	-				+1.3
4,410,797	+				+0.1
4,410,797	+				+0.3
4,410,798	+				-3.1
4,410,805	-				+1.1
4,410,816	-				-0.4
4,410,817	-				-0.3
4,410,832	+				-0.9
4,410,832	+				-1.0
4,410,834	-				-0.7
4,410,840	-				+0.0
4,410,840	-				-0.4
4,410,853	+				+0.7
4,410,881	-				+1.3
4,410,885	+				-0.7
4,410,887	-				-0.0
4,410,893	-				-0.9
4,410,907	+				-0.1
4,410,907	+				-0.9
4,410,907	+				-1.9
4,410,907	+				-0.2
4,410,907	+				-0.6
4,410,907	+				-1.4
4,410,907	+				-0.1
4,410,907	+				+0.3
4,410,915	-				+0.3
4,410,915	-				+0.5
4,410,915	-				+1.6
4,410,915	-				-2.1
4,410,915	-				+0.5
4,410,915	-				-0.4
4,410,915	-				-0.9
4,410,915	-				+0.9
4,410,915	-				-0.6
4,410,936	-		GFF4413	0.13	-0.2
4,410,960	-		GFF4413	0.19	-2.6
4,410,963	+		GFF4413	0.20	-0.7
4,410,969	+		GFF4413	0.21	+0.2
4,410,969	+		GFF4413	0.21	-0.4
4,410,969	+		GFF4413	0.21	-0.4
4,410,977	-		GFF4413	0.23	+0.6
4,410,982	+		GFF4413	0.25	-0.5
4,410,982	-		GFF4413	0.25	+0.9
4,410,994	+		GFF4413	0.28	-1.9
4,411,002	+		GFF4413	0.30	-0.4
4,411,002	-		GFF4413	0.30	-0.3
4,411,015	-		GFF4413	0.33	-0.4
4,411,015	-		GFF4413	0.33	+0.3
4,411,036	+		GFF4413	0.39	+0.0
4,411,036	+		GFF4413	0.39	-1.7
4,411,036	+		GFF4413	0.39	+0.2
4,411,036	+		GFF4413	0.39	-1.4
4,411,038	+		GFF4413	0.39	+0.1
4,411,044	-		GFF4413	0.41	+0.3
4,411,074	-		GFF4413	0.49	-0.5
4,411,087	-		GFF4413	0.52	+0.1
4,411,089	-		GFF4413	0.53	-0.5
4,411,094	-		GFF4413	0.54	-1.5
4,411,094	-		GFF4413	0.54	-0.7
4,411,111	-		GFF4413	0.59	-1.0
4,411,111	-		GFF4413	0.59	-1.2
4,411,166	-		GFF4413	0.73	-0.5
4,411,172	-		GFF4413	0.75	+1.8
4,411,189	-		GFF4413	0.79	+0.6
4,411,190	-		GFF4413	0.79	+0.3
4,411,212	-		GFF4413	0.85	-1.0
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