Strain Fitness in Sphingobium sp. HT1-2 around GFF4399

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,400,846	-		GFF4398	0.68	-1.7
4,400,846	-		GFF4398	0.68	-0.4
4,400,846	-		GFF4398	0.68	-1.8
4,400,846	-		GFF4398	0.68	-0.3
4,400,894	+		GFF4398	0.69	-0.4
4,400,894	+		GFF4398	0.69	-0.8
4,400,894	+		GFF4398	0.69	+0.2
4,400,894	+		GFF4398	0.69	-1.2
4,400,894	+		GFF4398	0.69	-0.1
4,400,894	+		GFF4398	0.69	-1.4
4,400,894	+		GFF4398	0.69	+0.7
4,400,894	+		GFF4398	0.69	+1.0
4,400,902	-		GFF4398	0.69	+0.5
4,400,902	-		GFF4398	0.69	-1.5
4,400,902	-		GFF4398	0.69	+0.2
4,400,902	-		GFF4398	0.69	-1.3
4,400,902	-		GFF4398	0.69	-0.3
4,400,902	-		GFF4398	0.69	+1.1
4,400,902	-		GFF4398	0.69	-0.2
4,400,902	-		GFF4398	0.69	-0.7
4,400,914	+		GFF4398	0.70	+0.3
4,400,914	+		GFF4398	0.70	-0.6
4,400,919	+		GFF4398	0.70	+2.0
4,400,922	-		GFF4398	0.70	-0.4
4,400,922	-		GFF4398	0.70	-1.2
4,400,922	-		GFF4398	0.70	-0.2
4,400,923	+		GFF4398	0.70	-0.6
4,400,924	+		GFF4398	0.70	+0.1
4,400,924	+		GFF4398	0.70	-1.1
4,400,930	+		GFF4398	0.70	-0.5
4,400,931	-		GFF4398	0.70	-0.8
4,400,932	-		GFF4398	0.70	-0.8
4,400,932	-		GFF4398	0.70	-0.1
4,400,938	+		GFF4398	0.71	-0.6
4,400,938	+		GFF4398	0.71	-1.9
4,400,938	+		GFF4398	0.71	-3.1
4,400,938	-		GFF4398	0.71	+1.0
4,400,946	-		GFF4398	0.71	-1.2
4,400,948	+		GFF4398	0.71	+0.8
4,400,997	+		GFF4398	0.72	-1.1
4,401,007	+		GFF4398	0.73	-0.3
4,401,015	-		GFF4398	0.73	+1.0
4,401,040	+		GFF4398	0.74	-0.4
4,401,040	+		GFF4398	0.74	-1.2
4,401,047	-		GFF4398	0.74	+0.6
4,401,048	-		GFF4398	0.74	-1.4
4,401,055	+		GFF4398	0.74	+1.1
4,401,065	+		GFF4398	0.75	-0.9
4,401,070	+		GFF4398	0.75	+0.1
4,401,072	-		GFF4398	0.75	-1.0
4,401,072	-		GFF4398	0.75	-0.9
4,401,072	-		GFF4398	0.75	-0.0
4,401,112	-		GFF4398	0.76	-1.4
4,401,125	+		GFF4398	0.77	-1.9
4,401,166	+		GFF4398	0.78	-2.0
4,401,166	+		GFF4398	0.78	-1.4
4,401,166	+		GFF4398	0.78	-0.6
4,401,167	+		GFF4398	0.78	-2.7
4,401,167	+		GFF4398	0.78	-0.5
4,401,174	-		GFF4398	0.78	-1.5
4,401,184	-		GFF4398	0.79	-0.8
4,401,184	-		GFF4398	0.79	+0.0
4,401,189	-		GFF4398	0.79	-0.2
4,401,194	-		GFF4398	0.79	-0.5
4,401,212	+		GFF4398	0.79	-0.3
4,401,212	+		GFF4398	0.79	-0.3
4,401,212	+		GFF4398	0.79	-1.2
4,401,220	-		GFF4398	0.80	-0.1
4,401,227	+		GFF4398	0.80	+0.2
4,401,239	+		GFF4398	0.80	-1.0
4,401,255	-		GFF4398	0.81	+0.3
4,401,260	+		GFF4398	0.81	-1.5
4,401,260	+		GFF4398	0.81	-1.6
4,401,260	+		GFF4398	0.81	-2.5
4,401,313	+		GFF4398	0.83	-1.1
4,401,316	+		GFF4398	0.83	+0.2
4,401,318	+		GFF4398	0.83	+0.1
4,401,321	-		GFF4398	0.83	-0.2
4,401,326	+		GFF4398	0.83	-0.5
4,401,326	-		GFF4398	0.83	-1.1
4,401,329	-		GFF4398	0.83	-1.0
4,401,329	-		GFF4398	0.83	-1.4
4,401,329	-		GFF4398	0.83	+0.9
4,401,329	-		GFF4398	0.83	-0.8
4,401,329	-		GFF4398	0.83	-1.2
4,401,331	+		GFF4398	0.83	+0.2
4,401,331	+		GFF4398	0.83	+0.3
4,401,331	+		GFF4398	0.83	+0.0
4,401,339	-		GFF4398	0.84	-1.7
4,401,339	-		GFF4398	0.84	-0.2
4,401,339	-		GFF4398	0.84	-0.5
4,401,339	-		GFF4398	0.84	+0.1
4,401,365	-		GFF4398	0.84	-0.0
4,401,371	-		GFF4398	0.85	-1.7
4,401,389	-		GFF4398	0.85	-1.6
4,401,390	-		GFF4398	0.85	-2.4
4,401,420	-		GFF4398	0.86	-0.1
4,401,424	+		GFF4398	0.86	+0.2
4,401,432	+		GFF4398	0.87	+0.5
4,401,434	+		GFF4398	0.87	+0.7
4,401,458	+		GFF4398	0.87	-2.9
4,401,458	+		GFF4398	0.87	-0.7
4,401,463	+		GFF4398	0.88	+0.1
4,401,463	+		GFF4398	0.88	-0.7
4,401,466	-		GFF4398	0.88	-0.1
4,401,468	+		GFF4398	0.88	-0.8
4,401,473	+		GFF4398	0.88	-0.3
4,401,473	+		GFF4398	0.88	-2.4
4,401,473	+		GFF4398	0.88	+0.6
4,401,473	+		GFF4398	0.88	-1.4
4,401,473	+		GFF4398	0.88	+0.6
4,401,473	+		GFF4398	0.88	-1.4
4,401,473	+		GFF4398	0.88	+0.6
4,401,480	+		GFF4398	0.88	-2.9
4,401,480	+		GFF4398	0.88	+1.0
4,401,480	+		GFF4398	0.88	-1.0
4,401,481	-		GFF4398	0.88	+0.9
4,401,481	-		GFF4398	0.88	-1.9
4,401,483	-		GFF4398	0.88	-0.5
4,401,483	-		GFF4398	0.88	+0.2
4,401,485	+		GFF4398	0.88	+0.7
4,401,488	-		GFF4398	0.88	-1.2
4,401,493	-		GFF4398	0.89	+0.1
4,401,493	-		GFF4398	0.89	+1.0
4,401,495	+		GFF4398	0.89	-0.3
4,401,495	+		GFF4398	0.89	-1.7
4,401,495	+		GFF4398	0.89	-0.4
4,401,495	+		GFF4398	0.89	+0.3
4,401,495	+		GFF4398	0.89	-0.6
4,401,495	+		GFF4398	0.89	+0.5
4,401,503	-		GFF4398	0.89	-0.9
4,401,503	-		GFF4398	0.89	-0.2
4,401,503	-		GFF4398	0.89	+0.2
4,401,503	-		GFF4398	0.89	+2.0
4,401,515	+		GFF4398	0.89	-2.5
4,401,515	+		GFF4398	0.89	-1.2
4,401,523	-		GFF4398	0.89	-1.1
4,401,533	+		GFF4398	0.90	+0.2
4,401,538	+		GFF4398	0.90	-1.3
4,401,538	+		GFF4398	0.90	+0.9
4,401,541	-				+0.0
4,401,541	-				-0.4
4,401,543	+				-0.4
4,401,543	+				-2.2
4,401,543	+				+0.7
4,401,543	+				-1.2
4,401,543	+				+0.7
4,401,543	+				+0.3
4,401,546	-				+1.3
4,401,546	-				+0.2
4,401,546	-				-0.1
4,401,551	-				-1.2
4,401,551	-				-0.5
4,401,551	-				+0.8
4,401,575	+				+1.7
4,401,575	+				+0.8
4,401,583	-				-0.3
4,401,583	-				-0.3
4,401,583	-				+0.3
4,401,583	-				+0.3
4,401,583	-				-1.0
4,401,583	-				-2.8
4,401,583	-				-0.7
4,401,591	+				-0.4
4,401,598	+				+0.2
4,401,598	+				+1.0
4,401,599	-				-1.6
4,401,616	-				+1.1
4,401,628	-				+1.0
4,401,633	+				-1.1
4,401,636	-				-1.3
4,401,651	+				-1.2
4,401,659	-				-1.9
4,401,678	-				-2.3
4,401,686	+				-0.3
4,401,713	-				-0.8
4,401,725	-				+1.2
4,401,727	+				-0.1
4,401,732	+				+0.8
4,401,740	-				+0.2
4,401,742	+				-1.7
4,401,742	+				+0.6
4,401,750	-				-0.2
4,401,754	+				-1.4
4,401,754	+				-0.9
4,401,754	+				-2.4
4,401,754	+				-0.6
4,401,754	+				+0.4
4,401,754	+				-0.8
4,401,754	+				-1.2
4,401,757	-				-2.1
4,401,759	+				+0.1
4,401,759	+				-0.3
4,401,761	+				+1.0
4,401,762	-				-0.6
4,401,762	-				-1.2
4,401,762	-				+0.3
4,401,762	-				-0.1
4,401,762	-				+0.3
4,401,768	-				+0.7
4,401,768	-				-0.7
4,401,768	-				-0.5
4,401,768	-				-0.1
4,401,796	-				+0.5
4,401,796	-				-1.7
4,401,798	+				-1.6
4,401,798	+				-1.1
4,401,803	+				+0.2
4,401,806	-				-0.8
4,401,810	+				-0.4
4,401,859	+				-1.5
4,401,864	+				-0.8
4,401,864	+				-0.1
4,401,864	+				+1.0
4,401,874	+				-0.3
4,401,879	+				+0.4
4,401,879	+				+0.0
4,401,882	-				-0.5
4,401,895	-				-1.0
4,401,895	-				-1.8
4,401,902	+				+0.3
4,401,910	+				-0.4
4,401,910	+				-1.4
4,401,918	-				-0.4
4,401,918	-				+0.9
4,401,918	-				+1.0
4,401,924	-				-0.6
4,401,945	-				+0.8
4,401,972	-				-2.2
4,401,980	+		GFF4399	0.10	-1.1
4,401,980	+		GFF4399	0.10	-0.4
4,401,980	+		GFF4399	0.10	-1.1
4,401,980	+		GFF4399	0.10	+0.2
4,401,980	+		GFF4399	0.10	+0.9
4,401,980	+		GFF4399	0.10	-0.4
4,401,980	+		GFF4399	0.10	-0.9
4,401,988	-		GFF4399	0.11	-1.6
4,401,988	-		GFF4399	0.11	+0.3
4,401,988	-		GFF4399	0.11	+0.8
4,401,988	-		GFF4399	0.11	+1.6
4,401,988	-		GFF4399	0.11	-1.0
4,401,988	-		GFF4399	0.11	+0.2
4,401,988	-		GFF4399	0.11	-0.5
4,401,988	-		GFF4399	0.11	-0.4
4,401,988	-		GFF4399	0.11	-1.6
4,401,988	-		GFF4399	0.11	-1.5
4,401,988	-		GFF4399	0.11	-0.6
4,401,988	-		GFF4399	0.11	-0.0
4,401,995	+		GFF4399	0.11	-0.3
4,402,003	-		GFF4399	0.12	-0.2
4,402,003	-		GFF4399	0.12	+0.7
4,402,018	+		GFF4399	0.13	+0.6
4,402,018	+		GFF4399	0.13	+0.6
4,402,023	+		GFF4399	0.13	-2.1
4,402,023	+		GFF4399	0.13	-0.4
4,402,023	+		GFF4399	0.13	-0.0
4,402,026	-		GFF4399	0.14	+0.9
4,402,030	+		GFF4399	0.14	+1.0
4,402,031	-		GFF4399	0.14	+0.2
4,402,031	-		GFF4399	0.14	-3.0
4,402,031	-		GFF4399	0.14	+0.8
4,402,031	-		GFF4399	0.14	+1.6
4,402,031	-		GFF4399	0.14	-1.8
4,402,038	-		GFF4399	0.14	-2.0
4,402,055	-		GFF4399	0.16	-0.8
4,402,146	+		GFF4399	0.23	-0.8
4,402,183	-		GFF4399	0.25	-2.2
4,402,189	-		GFF4399	0.26	+0.1
4,402,190	-		GFF4399	0.26	+0.0
4,402,193	-		GFF4399	0.26	-2.5
4,402,225	-		GFF4399	0.28	+0.4
4,402,225	-		GFF4399	0.28	-2.1
4,402,228	-		GFF4399	0.29	+0.5
4,402,245	+		GFF4399	0.30	+0.0
4,402,246	+		GFF4399	0.30	-1.6
4,402,247	+		GFF4399	0.30	-1.4
4,402,262	+		GFF4399	0.31	-0.1
4,402,272	+		GFF4399	0.32	-0.2
4,402,272	+		GFF4399	0.32	+0.7
4,402,280	+		GFF4399	0.33	-2.1
4,402,280	+		GFF4399	0.33	+0.6
4,402,280	-		GFF4399	0.33	+0.1
4,402,289	+		GFF4399	0.33	-0.4
4,402,289	+		GFF4399	0.33	-1.4
4,402,297	-		GFF4399	0.34	-0.4
4,402,299	+		GFF4399	0.34	-2.0
4,402,299	+		GFF4399	0.34	-0.8
4,402,299	+		GFF4399	0.34	-1.0
4,402,299	+		GFF4399	0.34	-0.3
4,402,299	+		GFF4399	0.34	-2.9
4,402,307	-		GFF4399	0.35	-2.2
4,402,307	-		GFF4399	0.35	-0.5
4,402,313	-		GFF4399	0.35	-2.0
4,402,319	-		GFF4399	0.36	-0.2
4,402,321	+		GFF4399	0.36	-1.2
4,402,345	-		GFF4399	0.37	-1.3
4,402,345	-		GFF4399	0.37	+0.1
4,402,384	+		GFF4399	0.40	+0.8
4,402,384	+		GFF4399	0.40	+0.9
4,402,386	+		GFF4399	0.41	-2.1
4,402,386	+		GFF4399	0.41	+1.1
4,402,386	+		GFF4399	0.41	-1.5
4,402,386	+		GFF4399	0.41	-1.2
4,402,394	-		GFF4399	0.41	-1.0
4,402,394	-		GFF4399	0.41	-2.0
4,402,394	-		GFF4399	0.41	+0.5
4,402,394	-		GFF4399	0.41	-0.2
4,402,394	-		GFF4399	0.41	+1.0
4,402,394	-		GFF4399	0.41	-0.7
4,402,394	-		GFF4399	0.41	+0.7
4,402,394	-		GFF4399	0.41	-0.7
4,402,394	-		GFF4399	0.41	+0.0
4,402,394	-		GFF4399	0.41	+0.4
4,402,394	-		GFF4399	0.41	-0.3
4,402,394	-		GFF4399	0.41	-0.5
4,402,394	-		GFF4399	0.41	-0.9
4,402,394	-		GFF4399	0.41	+0.4
4,402,394	-		GFF4399	0.41	+1.1
4,402,394	-		GFF4399	0.41	-0.4
4,402,401	+		GFF4399	0.42	+0.2
4,402,401	+		GFF4399	0.42	-0.8
4,402,433	-		GFF4399	0.44	-0.2
4,402,433	-		GFF4399	0.44	-1.8
4,402,438	+		GFF4399	0.44	+0.4
4,402,459	+		GFF4399	0.46	-1.9
4,402,460	+		GFF4399	0.46	+0.9
4,402,468	-		GFF4399	0.47	+0.3
4,402,468	-		GFF4399	0.47	-0.2
4,402,468	-		GFF4399	0.47	-2.4
4,402,468	-		GFF4399	0.47	-2.4
4,402,487	+		GFF4399	0.48	+0.4
4,402,508	+		GFF4399	0.50	-0.5
4,402,508	+		GFF4399	0.50	-2.2
4,402,508	+		GFF4399	0.50	+0.4
4,402,508	+		GFF4399	0.50	+0.4
4,402,508	+		GFF4399	0.50	+0.9
4,402,508	+		GFF4399	0.50	-0.3
4,402,516	-		GFF4399	0.50	-0.5
4,402,516	-		GFF4399	0.50	+0.6
4,402,516	-		GFF4399	0.50	-1.9
4,402,516	-		GFF4399	0.50	+1.2
4,402,517	-		GFF4399	0.50	-1.8
4,402,521	-		GFF4399	0.51	-1.5
4,402,532	-		GFF4399	0.51	+1.3
4,402,541	+		GFF4399	0.52	-3.5
4,402,551	-		GFF4399	0.53	-1.7
4,402,574	-		GFF4399	0.55	-1.5
4,402,579	+		GFF4399	0.55	-0.5
4,402,579	+		GFF4399	0.55	-0.4
4,402,587	-		GFF4399	0.56	-1.0
4,402,600	+		GFF4399	0.57	+0.0
4,402,608	-		GFF4399	0.57	-0.2
4,402,608	-		GFF4399	0.57	+1.2
4,402,621	+		GFF4399	0.58	-0.2
4,402,621	+		GFF4399	0.58	-1.7
4,402,623	-		GFF4399	0.58	-0.3
4,402,629	-		GFF4399	0.59	+0.9
4,402,629	-		GFF4399	0.59	-0.6
4,402,629	-		GFF4399	0.59	-0.9
4,402,629	-		GFF4399	0.59	-0.4
4,402,640	+		GFF4399	0.60	+0.3
4,402,648	+		GFF4399	0.60	-0.2
4,402,649	+		GFF4399	0.60	+0.2
4,402,664	-		GFF4399	0.61	-0.4
4,402,664	-		GFF4399	0.61	-0.6
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4,403,053	-				-1.9
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