Strain Fitness in Sphingobium sp. HT1-2 around GFF4399

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,400,846	-		GFF4398	0.68	-1.5
4,400,846	-		GFF4398	0.68	-0.2
4,400,846	-		GFF4398	0.68	-1.6
4,400,846	-		GFF4398	0.68	-0.1
4,400,894	+		GFF4398	0.69	-0.6
4,400,894	+		GFF4398	0.69	-1.0
4,400,894	+		GFF4398	0.69	+0.1
4,400,894	+		GFF4398	0.69	+0.9
4,400,894	+		GFF4398	0.69	-0.0
4,400,902	-		GFF4398	0.69	+0.7
4,400,902	-		GFF4398	0.69	-1.3
4,400,902	-		GFF4398	0.69	+0.4
4,400,902	-		GFF4398	0.69	-0.5
4,400,922	-		GFF4398	0.70	-0.2
4,400,922	-		GFF4398	0.70	+0.0
4,400,923	+		GFF4398	0.70	-0.4
4,400,924	+		GFF4398	0.70	-0.9
4,400,930	+		GFF4398	0.70	-0.3
4,400,931	-		GFF4398	0.70	-0.6
4,400,932	-		GFF4398	0.70	-0.6
4,400,932	-		GFF4398	0.70	+0.1
4,400,932	-		GFF4398	0.70	+0.3
4,400,932	-		GFF4398	0.70	+0.1
4,400,938	+		GFF4398	0.71	-0.4
4,400,938	+		GFF4398	0.71	-2.9
4,400,946	-		GFF4398	0.71	-1.0
4,400,948	+		GFF4398	0.71	+1.0
4,401,007	+		GFF4398	0.73	-0.1
4,401,015	-		GFF4398	0.73	+1.2
4,401,034	+		GFF4398	0.74	-1.4
4,401,040	+		GFF4398	0.74	-0.2
4,401,040	+		GFF4398	0.74	-1.0
4,401,048	-		GFF4398	0.74	-1.2
4,401,065	+		GFF4398	0.75	-0.7
4,401,070	+		GFF4398	0.75	+0.3
4,401,072	-		GFF4398	0.75	-0.8
4,401,072	-		GFF4398	0.75	-0.7
4,401,072	-		GFF4398	0.75	+0.2
4,401,072	-		GFF4398	0.75	+2.0
4,401,078	-		GFF4398	0.75	+0.1
4,401,166	+		GFF4398	0.78	-1.2
4,401,166	+		GFF4398	0.78	-0.4
4,401,167	+		GFF4398	0.78	-0.3
4,401,174	-		GFF4398	0.78	-1.3
4,401,184	-		GFF4398	0.79	-0.6
4,401,184	-		GFF4398	0.79	+0.2
4,401,189	-		GFF4398	0.79	-0.0
4,401,194	-		GFF4398	0.79	-0.3
4,401,212	+		GFF4398	0.79	-1.0
4,401,220	-		GFF4398	0.80	+0.1
4,401,239	+		GFF4398	0.80	-0.8
4,401,255	-		GFF4398	0.81	+0.5
4,401,260	+		GFF4398	0.81	-1.3
4,401,260	+		GFF4398	0.81	-2.3
4,401,313	+		GFF4398	0.83	-0.9
4,401,321	-		GFF4398	0.83	-0.0
4,401,329	-		GFF4398	0.83	-1.0
4,401,331	+		GFF4398	0.83	+0.5
4,401,339	-		GFF4398	0.84	+0.0
4,401,339	-		GFF4398	0.84	+0.3
4,401,357	+		GFF4398	0.84	+0.5
4,401,371	-		GFF4398	0.85	-1.5
4,401,420	-		GFF4398	0.86	+0.1
4,401,432	+		GFF4398	0.87	+0.7
4,401,458	+		GFF4398	0.87	-2.7
4,401,458	+		GFF4398	0.87	-0.5
4,401,463	+		GFF4398	0.88	+0.3
4,401,463	+		GFF4398	0.88	-0.5
4,401,473	+		GFF4398	0.88	-0.1
4,401,473	+		GFF4398	0.88	-2.2
4,401,473	+		GFF4398	0.88	-1.2
4,401,473	+		GFF4398	0.88	+0.8
4,401,473	+		GFF4398	0.88	-1.2
4,401,480	+		GFF4398	0.88	+2.9
4,401,480	+		GFF4398	0.88	+1.2
4,401,481	-		GFF4398	0.88	-1.7
4,401,481	-		GFF4398	0.88	+2.8
4,401,485	+		GFF4398	0.88	+0.9
4,401,488	-		GFF4398	0.88	-1.0
4,401,493	-		GFF4398	0.89	+0.3
4,401,493	-		GFF4398	0.89	+1.2
4,401,495	+		GFF4398	0.89	-1.5
4,401,495	+		GFF4398	0.89	+0.5
4,401,495	+		GFF4398	0.89	-0.4
4,401,495	+		GFF4398	0.89	+0.7
4,401,503	-		GFF4398	0.89	-0.7
4,401,503	-		GFF4398	0.89	-0.0
4,401,503	-		GFF4398	0.89	+2.2
4,401,515	+		GFF4398	0.89	-1.0
4,401,531	-		GFF4398	0.90	+2.1
4,401,533	+		GFF4398	0.90	+1.1
4,401,533	+		GFF4398	0.90	+0.4
4,401,538	+		GFF4398	0.90	-1.1
4,401,538	+		GFF4398	0.90	+1.1
4,401,541	-				-0.2
4,401,543	+				-0.2
4,401,543	+				-2.0
4,401,543	+				+0.9
4,401,546	-				+1.5
4,401,546	-				+0.4
4,401,546	-				+0.1
4,401,551	-				-1.0
4,401,551	-				-0.3
4,401,575	+				+1.3
4,401,575	+				+1.6
4,401,575	+				+1.3
4,401,575	+				+1.8
4,401,575	+				+1.0
4,401,583	-				-0.1
4,401,583	-				+0.5
4,401,583	-				-0.8
4,401,583	-				-0.0
4,401,591	+				-0.2
4,401,598	+				+1.2
4,401,616	-				+1.3
4,401,628	-				+1.2
4,401,636	-				-1.1
4,401,651	+				-1.0
4,401,659	-				-1.7
4,401,727	+				+0.1
4,401,732	+				+0.9
4,401,742	+				-1.5
4,401,742	+				-0.7
4,401,742	+				+0.8
4,401,754	+				-0.8
4,401,754	+				-0.4
4,401,754	+				+0.6
4,401,754	+				-1.0
4,401,759	+				+1.5
4,401,759	+				+0.3
4,401,761	+				+1.2
4,401,762	-				-1.0
4,401,762	-				+0.5
4,401,762	-				+0.1
4,401,768	-				+0.9
4,401,768	-				-0.3
4,401,774	-				+0.6
4,401,798	+				-0.9
4,401,864	+				-0.6
4,401,864	+				+1.1
4,401,874	+				-0.1
4,401,882	-				-0.3
4,401,895	-				-0.8
4,401,910	+				-0.2
4,401,918	-				-0.2
4,401,924	-				-0.4
4,401,945	-				+1.0
4,401,980	+		GFF4399	0.10	+0.4
4,401,980	+		GFF4399	0.10	-0.7
4,401,988	-		GFF4399	0.11	-0.8
4,401,988	-		GFF4399	0.11	-0.3
4,401,988	-		GFF4399	0.11	-0.2
4,401,988	-		GFF4399	0.11	-1.4
4,402,003	-		GFF4399	0.12	+0.0
4,402,003	-		GFF4399	0.12	+0.9
4,402,031	-		GFF4399	0.14	+1.0
4,402,031	-		GFF4399	0.14	+1.8
4,402,246	+		GFF4399	0.30	-1.4
4,402,272	+		GFF4399	0.32	-0.0
4,402,272	+		GFF4399	0.32	+0.9
4,402,280	-		GFF4399	0.33	+0.3
4,402,289	+		GFF4399	0.33	-1.2
4,402,297	-		GFF4399	0.34	-0.0
4,402,299	+		GFF4399	0.34	-0.6
4,402,299	+		GFF4399	0.34	-0.8
4,402,299	+		GFF4399	0.34	-0.1
4,402,299	+		GFF4399	0.34	-2.7
4,402,307	-		GFF4399	0.35	-0.3
4,402,313	-		GFF4399	0.35	-1.0
4,402,321	+		GFF4399	0.36	+0.0
4,402,321	+		GFF4399	0.36	-1.0
4,402,384	+		GFF4399	0.40	+0.9
4,402,384	+		GFF4399	0.40	+1.1
4,402,386	+		GFF4399	0.41	-1.9
4,402,394	-		GFF4399	0.41	-0.5
4,402,394	-		GFF4399	0.41	+0.0
4,402,394	-		GFF4399	0.41	-0.1
4,402,394	-		GFF4399	0.41	+1.3
4,402,401	+		GFF4399	0.42	+0.4
4,402,433	-		GFF4399	0.44	-0.0
4,402,433	-		GFF4399	0.44	-1.6
4,402,438	+		GFF4399	0.44	+0.6
4,402,438	-		GFF4399	0.44	+1.0
4,402,460	+		GFF4399	0.46	+1.1
4,402,460	+		GFF4399	0.46	-0.3
4,402,468	-		GFF4399	0.47	+0.1
4,402,468	-		GFF4399	0.47	+0.5
4,402,468	-		GFF4399	0.47	-0.0
4,402,468	-		GFF4399	0.47	-2.2
4,402,508	+		GFF4399	0.50	+0.7
4,402,508	+		GFF4399	0.50	+0.6
4,402,508	+		GFF4399	0.50	-0.3
4,402,508	+		GFF4399	0.50	+0.3
4,402,508	+		GFF4399	0.50	+0.6
4,402,508	+		GFF4399	0.50	+0.6
4,402,509	+		GFF4399	0.50	-0.9
4,402,516	-		GFF4399	0.50	-1.0
4,402,516	-		GFF4399	0.50	-0.3
4,402,516	-		GFF4399	0.50	+0.8
4,402,517	-		GFF4399	0.50	+0.1
4,402,521	-		GFF4399	0.51	-1.3
4,402,532	-		GFF4399	0.51	+1.5
4,402,574	-		GFF4399	0.55	-1.3
4,402,579	+		GFF4399	0.55	-0.2
4,402,587	-		GFF4399	0.56	-0.8
4,402,608	-		GFF4399	0.57	-0.0
4,402,621	+		GFF4399	0.58	+0.0
4,402,623	-		GFF4399	0.58	-0.1
4,402,629	-		GFF4399	0.59	+1.1
4,402,629	-		GFF4399	0.59	-0.2
4,402,648	+		GFF4399	0.60	-0.0
4,402,704	+		GFF4399	0.64	-0.0
4,402,724	-		GFF4399	0.66	-0.1
4,402,750	+		GFF4399	0.68	-0.6
4,402,750	+		GFF4399	0.68	+0.8
4,402,754	-		GFF4399	0.68	+0.6
4,402,758	-		GFF4399	0.68	+0.2
4,402,764	+		GFF4399	0.69	+1.6
4,402,764	+		GFF4399	0.69	-0.3
4,402,772	-		GFF4399	0.69	-0.7
4,402,774	+		GFF4399	0.70	+1.2
4,402,782	-		GFF4399	0.70	-0.9
4,402,782	-		GFF4399	0.70	-0.8
4,402,784	+		GFF4399	0.70	+0.2
4,402,789	+		GFF4399	0.71	+0.4
4,402,794	+		GFF4399	0.71	+0.3
4,402,797	-		GFF4399	0.71	-1.2
4,402,797	-		GFF4399	0.71	+0.8
4,402,843	+		GFF4399	0.75	+1.1
4,402,843	+		GFF4399	0.75	-0.1
4,402,857	-		GFF4399	0.76	+0.5
4,402,859	+		GFF4399	0.76	+0.1
4,402,898	+		GFF4399	0.79	-0.4
4,402,904	+		GFF4399	0.79	-0.3
4,402,906	-		GFF4399	0.79	+0.1
4,402,908	+		GFF4399	0.80	+0.6
4,402,918	+		GFF4399	0.80	-0.8
4,402,924	-		GFF4399	0.81	+0.5
4,402,933	+		GFF4399	0.81	+0.3
4,402,933	+		GFF4399	0.81	-1.5
4,402,933	+		GFF4399	0.81	-0.5
4,402,933	+		GFF4399	0.81	-0.2
4,402,938	+		GFF4399	0.82	+0.0
4,402,938	+		GFF4399	0.82	+1.0
4,402,941	-		GFF4399	0.82	-1.2
4,402,943	+		GFF4399	0.82	-2.0
4,402,943	+		GFF4399	0.82	-0.3
4,402,943	+		GFF4399	0.82	+0.4
4,402,943	+		GFF4399	0.82	-0.8
4,402,943	+		GFF4399	0.82	+0.3
4,402,943	+		GFF4399	0.82	+1.3
4,402,943	+		GFF4399	0.82	+0.5
4,402,943	+		GFF4399	0.82	+1.1
4,402,943	+		GFF4399	0.82	-0.5
4,402,943	+		GFF4399	0.82	-1.7
4,402,943	+		GFF4399	0.82	-0.8
4,402,943	+		GFF4399	0.82	+0.2
4,402,943	+		GFF4399	0.82	+0.6
4,402,943	+		GFF4399	0.82	-0.7
4,402,943	+		GFF4399	0.82	+0.3
4,402,943	+		GFF4399	0.82	-1.7
4,402,943	+		GFF4399	0.82	-0.5
4,402,943	+		GFF4399	0.82	-0.7
4,402,943	+		GFF4399	0.82	-0.5
4,402,943	+		GFF4399	0.82	-0.1
4,402,943	+		GFF4399	0.82	-0.2
4,402,943	+		GFF4399	0.82	+1.3
4,402,943	+		GFF4399	0.82	+0.9
4,402,943	+		GFF4399	0.82	+0.6
4,402,946	-		GFF4399	0.82	-1.7
4,402,951	-		GFF4399	0.83	-0.5
4,402,951	-		GFF4399	0.83	+1.5
4,402,951	-		GFF4399	0.83	-0.7
4,402,951	-		GFF4399	0.83	-0.3
4,402,951	-		GFF4399	0.83	+0.3
4,402,951	-		GFF4399	0.83	-2.7
4,402,951	-		GFF4399	0.83	+0.0
4,402,951	-		GFF4399	0.83	-1.1
4,402,951	-		GFF4399	0.83	-1.0
4,402,951	-		GFF4399	0.83	+1.3
4,402,951	-		GFF4399	0.83	+1.5
4,402,951	-		GFF4399	0.83	-0.2
4,402,951	-		GFF4399	0.83	-0.8
4,402,951	-		GFF4399	0.83	-1.3
4,402,951	-		GFF4399	0.83	+0.2
4,402,951	-		GFF4399	0.83	-0.7
4,402,951	-		GFF4399	0.83	-1.4
4,402,951	-		GFF4399	0.83	-0.0
4,402,951	-		GFF4399	0.83	-0.5
4,402,951	-		GFF4399	0.83	-1.5
4,402,951	-		GFF4399	0.83	-2.2
4,402,951	-		GFF4399	0.83	+0.1
4,402,951	-		GFF4399	0.83	-0.7
4,402,953	-		GFF4399	0.83	-0.6
4,402,961	-		GFF4399	0.84	-0.8
4,402,961	-		GFF4399	0.84	+0.4
4,402,961	-		GFF4399	0.84	+0.1
4,402,971	+		GFF4399	0.84	+0.7
4,402,979	-		GFF4399	0.85	-0.6
4,402,987	+		GFF4399	0.86	-1.0
4,402,987	+		GFF4399	0.86	-0.1
4,402,995	-		GFF4399	0.86	+0.1
4,402,995	-		GFF4399	0.86	+0.1
4,402,995	-		GFF4399	0.86	+1.5
4,402,995	-		GFF4399	0.86	-0.1
4,403,027	-		GFF4399	0.89	-1.5
4,403,030	+		GFF4399	0.89	+1.0
4,403,031	-		GFF4399	0.89	-0.9
4,403,031	-		GFF4399	0.89	-1.6
4,403,033	-		GFF4399	0.89	-0.1
4,403,053	-				-0.4
4,403,053	-				-1.7
4,403,071	-				-2.3
4,403,153	+				-0.0
4,403,243	+		GFF4400	0.12	+0.8
4,403,285	+		GFF4400	0.22	-0.1
4,403,287	+		GFF4400	0.22	+0.1
4,403,307	-		GFF4400	0.27	-0.7
4,403,314	-		GFF4400	0.29	+0.2
4,403,319	-		GFF4400	0.30	+0.4
4,403,319	-		GFF4400	0.30	-0.5
4,403,373	-		GFF4400	0.43	-1.6
4,403,392	-		GFF4400	0.47	-0.6
4,403,392	-		GFF4400	0.47	+1.3
4,403,394	+		GFF4400	0.48	-0.1
4,403,398	-		GFF4400	0.49	-1.0
4,403,398	-		GFF4400	0.49	-0.4
4,403,400	+		GFF4400	0.49	-2.5
4,403,400	+		GFF4400	0.49	+0.1
4,403,400	+		GFF4400	0.49	-1.2
4,403,402	-		GFF4400	0.50	+0.4
4,403,435	+		GFF4400	0.57	+1.0
4,403,435	+		GFF4400	0.57	+0.1
4,403,435	+		GFF4400	0.57	+1.4
4,403,470	+		GFF4400	0.66	-0.7
4,403,478	-		GFF4400	0.68	+0.5
4,403,520	+		GFF4400	0.78	-0.8
4,403,520	+		GFF4400	0.78	-0.1
4,403,520	+		GFF4400	0.78	+1.3
4,403,525	+		GFF4400	0.79	+0.3
4,403,528	-		GFF4400	0.80	-1.9
4,403,528	-		GFF4400	0.80	-1.0
4,403,528	-		GFF4400	0.80	+1.6
4,403,528	-		GFF4400	0.80	+0.7
4,403,528	-		GFF4400	0.80	+0.8
4,403,528	-		GFF4400	0.80	-0.7
4,403,528	-		GFF4400	0.80	-1.3
4,403,528	-		GFF4400	0.80	+0.2
4,403,530	-		GFF4400	0.80	-0.1
4,403,533	-		GFF4400	0.81	+1.1
4,403,535	-		GFF4400	0.81	+0.5
4,403,551	+		GFF4400	0.85	-0.2
4,403,551	+		GFF4400	0.85	+0.6
4,403,566	+		GFF4400	0.89	+0.4
4,403,583	+				+0.1
4,403,591	-				+0.5
4,403,609	+				-0.8
4,403,609	+				-0.7
4,403,609	+				-1.6
4,403,609	+				+0.1
4,403,609	+				-0.5
4,403,609	+				-2.3
4,403,609	+				+1.1
4,403,609	+				-2.2
4,403,617	-				-1.8
4,403,617	-				-1.3
4,403,617	-				-0.7
4,403,617	-				+0.8
4,403,622	-				-0.1
4,403,655	+				-1.0
4,403,667	+				-0.7
4,403,667	+				-0.3
4,403,671	+				-0.1
4,403,675	-				-0.3
4,403,675	-				-0.8
4,403,675	-				-0.1
4,403,675	-				-1.7
4,403,675	-				+0.1
4,403,676	+				+1.6
4,403,684	-				-0.4
4,403,684	-				-0.2
4,403,726	+				+0.9
4,403,731	+				-0.9
4,403,734	-				-0.2
4,403,734	-				+2.0
4,403,734	-				-0.4
4,403,734	-				-2.4
4,403,734	-				+1.2
4,403,734	-				-0.2
4,403,736	-				+0.4
4,403,739	-				+1.6
4,403,739	-				-1.6
4,403,744	-				-2.1
4,403,770	+				-1.0
4,403,832	-		GFF4401	0.14	-0.2
4,403,918	+		GFF4401	0.42	+0.0
4,403,926	-		GFF4401	0.44	+0.1
4,403,933	-		GFF4401	0.47	-0.4
4,403,952	-		GFF4401	0.53	+0.3
4,403,983	+		GFF4401	0.63	+0.8
4,403,983	+		GFF4401	0.63	-0.2
4,404,040	+		GFF4401	0.82	-0.4
4,404,082	-				+1.1
4,404,097	+				+1.1
4,404,118	+				+0.1
4,404,124	+				-0.4
4,404,124	+				-1.4
4,404,125	+				+0.9
4,404,126	-				-2.1
4,404,141	-				-0.6
4,404,143	+				-1.0
4,404,154	+				+0.7