Strain Fitness in Sphingobium sp. HT1-2 around GFF4397

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,396,773	-		GFF4395	0.47	+0.8
4,396,784	+		GFF4395	0.51	-0.5
4,396,784	+		GFF4395	0.51	+0.0
4,396,794	+		GFF4395	0.55	-0.9
4,396,843	-		GFF4395	0.74	+0.9
4,396,862	+		GFF4395	0.81	+0.8
4,396,865	-		GFF4395	0.83	-1.4
4,396,865	-		GFF4395	0.83	+0.2
4,396,867	+		GFF4395	0.83	-2.5
4,396,867	+		GFF4395	0.83	-1.4
4,396,875	-		GFF4395	0.86	-1.4
4,396,877	+		GFF4395	0.87	-0.4
4,396,882	+		GFF4395	0.89	-0.4
4,396,944	+				-1.7
4,396,952	-				-0.6
4,396,952	-				+0.0
4,396,959	+				+1.1
4,396,985	+				+1.1
4,396,993	-				-0.2
4,397,002	+				-1.0
4,397,002	-				+0.4
4,397,065	-				+1.7
4,397,114	+				-0.7
4,397,121	+				+1.4
4,397,129	-				-0.3
4,397,131	+				+0.1
4,397,137	-				+0.5
4,397,163	-				+0.4
4,397,218	-		GFF4396	0.20	-0.0
4,397,226	-		GFF4396	0.22	+0.7
4,397,287	-		GFF4396	0.37	-1.4
4,397,294	-		GFF4396	0.38	+0.5
4,397,310	+		GFF4396	0.42	-0.8
4,397,310	+		GFF4396	0.42	-1.5
4,397,310	+		GFF4396	0.42	+1.7
4,397,315	+		GFF4396	0.43	-1.8
4,397,318	-		GFF4396	0.44	-0.8
4,397,318	-		GFF4396	0.44	-0.0
4,397,318	-		GFF4396	0.44	-0.3
4,397,325	+		GFF4396	0.46	-0.7
4,397,330	+		GFF4396	0.47	+0.0
4,397,333	-		GFF4396	0.48	+0.6
4,397,333	-		GFF4396	0.48	-0.5
4,397,337	+		GFF4396	0.49	+0.8
4,397,346	+		GFF4396	0.51	+0.9
4,397,354	-		GFF4396	0.53	+0.0
4,397,354	-		GFF4396	0.53	-1.2
4,397,365	+		GFF4396	0.55	+0.4
4,397,373	-		GFF4396	0.57	+1.0
4,397,387	+		GFF4396	0.60	+0.8
4,397,417	-		GFF4396	0.68	+1.3
4,397,427	+		GFF4396	0.70	-0.6
4,397,429	-		GFF4396	0.70	-0.5
4,397,444	-		GFF4396	0.74	-0.2
4,397,504	-		GFF4396	0.88	-0.7
4,397,522	+				-0.6
4,397,522	-				+0.1
4,397,530	-				+0.1
4,397,536	+				-0.7
4,397,541	+				-0.8
4,397,549	-				+1.3
4,397,573	+				-0.7
4,397,575	-				-0.3
4,397,575	-				-1.4
4,397,583	-				+0.6
4,397,583	-				-1.3
4,397,585	+				-1.6
4,397,593	-				-0.5
4,397,610	+				-0.6
4,397,620	+				-0.2
4,397,620	+				-0.1
4,397,623	-				+0.7
4,397,661	-				+1.3
4,397,699	+				-0.9
4,397,699	+				+1.1
4,397,732	-				+0.5
4,397,735	+				+0.5
4,397,735	+				+0.6
4,397,751	+				+0.6
4,397,751	+				-0.6
4,397,751	+				-2.2
4,397,751	+				-0.4
4,397,759	-				+0.3
4,397,759	-				-0.3
4,397,759	-				+0.6
4,397,759	-				+0.1
4,397,759	-				-0.2
4,397,759	-				-1.3
4,397,764	-				-0.2
4,397,766	-				+1.1
4,397,779	+				-0.6
4,397,800	-		GFF4397	0.11	+0.6
4,397,808	-		GFF4397	0.12	+1.4
4,397,809	+		GFF4397	0.12	+0.1
4,397,823	-		GFF4397	0.13	-0.7
4,397,858	+		GFF4397	0.16	+0.4
4,397,866	-		GFF4397	0.17	+1.1
4,397,881	+		GFF4397	0.18	+0.3
4,397,886	+		GFF4397	0.19	-0.0
4,397,891	+		GFF4397	0.19	-1.0
4,397,891	+		GFF4397	0.19	+0.5
4,397,899	-		GFF4397	0.20	-1.2
4,397,899	-		GFF4397	0.20	+1.0
4,397,899	-		GFF4397	0.20	+1.7
4,397,899	-		GFF4397	0.20	-0.4
4,397,899	-		GFF4397	0.20	-1.3
4,397,907	-		GFF4397	0.21	-0.0
4,397,909	+		GFF4397	0.21	+1.1
4,397,909	-		GFF4397	0.21	-0.9
4,397,917	-		GFF4397	0.22	-0.6
4,397,920	+		GFF4397	0.22	-1.1
4,397,928	-		GFF4397	0.23	-0.6
4,397,928	-		GFF4397	0.23	-0.4
4,397,928	-		GFF4397	0.23	+0.4
4,397,928	-		GFF4397	0.23	+1.0
4,397,962	+		GFF4397	0.26	+0.5
4,397,970	-		GFF4397	0.27	+1.1
4,397,970	-		GFF4397	0.27	+1.1
4,397,970	-		GFF4397	0.27	-0.4
4,397,970	-		GFF4397	0.27	-2.8
4,397,970	-		GFF4397	0.27	+1.2
4,397,970	-		GFF4397	0.27	-0.2
4,397,980	+		GFF4397	0.28	-1.2
4,397,980	+		GFF4397	0.28	-1.7
4,397,980	+		GFF4397	0.28	-0.1
4,397,980	+		GFF4397	0.28	-0.8
4,397,980	+		GFF4397	0.28	-0.3
4,397,980	+		GFF4397	0.28	+0.1
4,397,985	+		GFF4397	0.28	-0.3
4,397,985	+		GFF4397	0.28	-0.7
4,397,988	-		GFF4397	0.28	-0.2
4,397,988	-		GFF4397	0.28	+0.1
4,397,988	-		GFF4397	0.28	+0.5
4,397,988	-		GFF4397	0.28	+0.6
4,397,988	-		GFF4397	0.28	-0.2
4,397,989	+		GFF4397	0.28	-0.3
4,397,993	-		GFF4397	0.29	-0.6
4,397,993	-		GFF4397	0.29	+1.0
4,397,993	-		GFF4397	0.29	-0.2
4,397,998	-		GFF4397	0.29	-0.2
4,397,998	-		GFF4397	0.29	-1.1
4,397,998	-		GFF4397	0.29	-2.2
4,398,010	+		GFF4397	0.30	-0.5
4,398,025	+		GFF4397	0.32	-0.1
4,398,025	+		GFF4397	0.32	-1.1
4,398,033	-		GFF4397	0.33	+0.2
4,398,066	-		GFF4397	0.36	-1.5
4,398,141	+		GFF4397	0.43	+0.4
4,398,143	+		GFF4397	0.43	-0.5
4,398,165	-		GFF4397	0.45	-0.6
4,398,221	+		GFF4397	0.50	-0.2
4,398,221	+		GFF4397	0.50	-0.3
4,398,224	-		GFF4397	0.50	-0.4
4,398,226	+		GFF4397	0.51	+0.4
4,398,229	-		GFF4397	0.51	-1.2
4,398,231	+		GFF4397	0.51	-0.2
4,398,231	+		GFF4397	0.51	+1.3
4,398,239	-		GFF4397	0.52	+0.7
4,398,239	-		GFF4397	0.52	-0.9
4,398,239	-		GFF4397	0.52	-2.6
4,398,244	+		GFF4397	0.52	+0.6
4,398,247	-		GFF4397	0.53	+0.5
4,398,249	+		GFF4397	0.53	-0.2
4,398,252	-		GFF4397	0.53	-0.2
4,398,264	+		GFF4397	0.54	+0.0
4,398,264	+		GFF4397	0.54	-0.3
4,398,319	-		GFF4397	0.59	+0.1
4,398,319	-		GFF4397	0.59	-0.0
4,398,321	+		GFF4397	0.59	-2.0
4,398,329	-		GFF4397	0.60	-2.6
4,398,329	-		GFF4397	0.60	-0.0
4,398,350	-		GFF4397	0.62	-0.2
4,398,352	-		GFF4397	0.62	+1.3
4,398,360	-		GFF4397	0.63	+0.1
4,398,360	-		GFF4397	0.63	-1.0
4,398,362	+		GFF4397	0.63	-1.3
4,398,365	-		GFF4397	0.64	-0.8
4,398,370	-		GFF4397	0.64	-1.0
4,398,372	+		GFF4397	0.64	+0.6
4,398,372	+		GFF4397	0.64	+1.3
4,398,372	+		GFF4397	0.64	-1.3
4,398,380	-		GFF4397	0.65	+2.9
4,398,380	-		GFF4397	0.65	+0.9
4,398,380	-		GFF4397	0.65	+0.2
4,398,380	-		GFF4397	0.65	+0.2
4,398,390	-		GFF4397	0.66	-0.5
4,398,421	+		GFF4397	0.69	-0.4
4,398,421	+		GFF4397	0.69	-0.8
4,398,429	-		GFF4397	0.69	+0.5
4,398,434	+		GFF4397	0.70	-0.7
4,398,436	-		GFF4397	0.70	+1.4
4,398,447	-		GFF4397	0.71	+0.3
4,398,526	+		GFF4397	0.78	+1.1
4,398,535	+		GFF4397	0.79	-0.4
4,398,554	+		GFF4397	0.81	+0.6
4,398,573	+		GFF4397	0.83	-0.0
4,398,573	+		GFF4397	0.83	+0.1
4,398,573	+		GFF4397	0.83	-0.2
4,398,581	-		GFF4397	0.84	-0.1
4,398,581	-		GFF4397	0.84	-0.2
4,398,581	-		GFF4397	0.84	-0.4
4,398,619	+		GFF4397	0.87	-1.2
4,398,619	+		GFF4397	0.87	-1.7
4,398,619	+		GFF4397	0.87	-1.7
4,398,619	+		GFF4397	0.87	-0.3
4,398,619	+		GFF4397	0.87	-1.7
4,398,624	+		GFF4397	0.88	-2.4
4,398,627	-		GFF4397	0.88	+0.6
4,398,627	-		GFF4397	0.88	-0.4
4,398,627	-		GFF4397	0.88	+0.4
4,398,627	-		GFF4397	0.88	-2.6
4,398,629	+		GFF4397	0.88	-0.7
4,398,634	+		GFF4397	0.89	-0.1
4,398,634	+		GFF4397	0.89	-0.2
4,398,634	+		GFF4397	0.89	-1.0
4,398,663	-				-0.6
4,398,667	-				+1.0
4,398,673	-				+0.3
4,398,677	-				-0.0
4,398,680	+				-1.2
4,398,698	+				-0.5
4,398,718	+				-0.8
4,398,726	+				+0.1
4,398,726	+				-0.9
4,398,726	-				+0.2
4,398,726	-				+1.0
4,398,726	-				+0.3
4,398,726	-				+0.5
4,398,734	-				+1.0
4,398,742	+				-0.1
4,398,750	+				+0.1
4,398,750	+				+0.7
4,398,750	+				-0.3
4,398,750	+				+0.5
4,398,750	+				+0.3
4,398,758	-				-1.0
4,398,758	-				-1.0
4,398,758	-				+1.1
4,398,765	-				-1.5
4,398,772	+				-0.0
4,398,780	-				+1.2
4,398,780	-				-1.6
4,398,780	-				+1.1
4,398,780	-				-2.5
4,398,790	-				-1.0
4,398,809	-				-1.3
4,398,813	+				+0.5
4,398,864	+				-0.2
4,398,864	+				-1.8
4,398,864	+				+0.3
4,398,864	+				+0.6
4,398,925	+				+0.5
4,398,970	-				+0.1
4,398,970	-				-2.4
4,398,976	+				-1.3
4,399,022	-				+0.4
4,399,025	+				-1.3
4,399,025	+				-0.2
4,399,027	-				+0.3
4,399,027	-				+1.3
4,399,033	-				+0.2
4,399,035	+				-0.7
4,399,035	+				-1.7
4,399,069	-		GFF4398	0.10	-1.3
4,399,071	+		GFF4398	0.10	-0.9
4,399,071	+		GFF4398	0.10	+0.7
4,399,071	+		GFF4398	0.10	+0.8
4,399,071	+		GFF4398	0.10	+1.0
4,399,071	+		GFF4398	0.10	-0.5
4,399,071	+		GFF4398	0.10	-0.0
4,399,071	+		GFF4398	0.10	-1.4
4,399,071	+		GFF4398	0.10	-0.1
4,399,071	+		GFF4398	0.10	+0.2
4,399,076	+		GFF4398	0.10	+0.8
4,399,076	+		GFF4398	0.10	+0.3
4,399,079	-		GFF4398	0.11	+0.2
4,399,079	-		GFF4398	0.11	-0.6
4,399,079	-		GFF4398	0.11	-0.6
4,399,079	-		GFF4398	0.11	-1.0
4,399,079	-		GFF4398	0.11	+1.7
4,399,079	-		GFF4398	0.11	+1.9
4,399,079	-		GFF4398	0.11	-0.0
4,399,079	-		GFF4398	0.11	+0.1
4,399,079	-		GFF4398	0.11	+1.1
4,399,084	-		GFF4398	0.11	+0.3
4,399,084	-		GFF4398	0.11	-1.7
4,399,084	-		GFF4398	0.11	-2.0
4,399,099	+		GFF4398	0.11	+0.2
4,399,132	+		GFF4398	0.12	+0.4
4,399,132	+		GFF4398	0.12	+0.4
4,399,132	+		GFF4398	0.12	-0.5
4,399,137	+		GFF4398	0.12	+0.5
4,399,137	+		GFF4398	0.12	-0.6
4,399,137	+		GFF4398	0.12	-1.2
4,399,137	+		GFF4398	0.12	-0.2
4,399,137	+		GFF4398	0.12	-1.5
4,399,137	+		GFF4398	0.12	-0.0
4,399,140	-		GFF4398	0.12	-0.4
4,399,140	-		GFF4398	0.12	+0.9
4,399,145	-		GFF4398	0.13	-0.5
4,399,145	-		GFF4398	0.13	+0.6
4,399,145	-		GFF4398	0.13	-0.6
4,399,150	-		GFF4398	0.13	-0.8
4,399,188	+		GFF4398	0.14	+2.0
4,399,188	+		GFF4398	0.14	-0.5
4,399,196	-		GFF4398	0.14	-0.6
4,399,196	-		GFF4398	0.14	+0.6
4,399,200	+		GFF4398	0.14	-1.3
4,399,223	-		GFF4398	0.15	-0.6
4,399,257	-		GFF4398	0.16	+0.6
4,399,268	-		GFF4398	0.17	+0.2
4,399,278	-		GFF4398	0.17	-0.7
4,399,278	-		GFF4398	0.17	-0.6
4,399,291	-		GFF4398	0.17	-0.1
4,399,304	+		GFF4398	0.18	-1.2
4,399,312	-		GFF4398	0.18	+1.1
4,399,319	+		GFF4398	0.18	+0.7
4,399,338	+		GFF4398	0.19	-0.5
4,399,338	+		GFF4398	0.19	+0.6
4,399,338	+		GFF4398	0.19	-0.4
4,399,338	+		GFF4398	0.19	+2.9
4,399,338	+		GFF4398	0.19	+0.3
4,399,338	+		GFF4398	0.19	-1.5
4,399,338	+		GFF4398	0.19	+0.2
4,399,340	+		GFF4398	0.19	-0.9
4,399,340	+		GFF4398	0.19	+0.5
4,399,346	-		GFF4398	0.19	+0.2
4,399,346	-		GFF4398	0.19	-0.3
4,399,346	-		GFF4398	0.19	-0.1
4,399,346	-		GFF4398	0.19	-0.6
4,399,346	-		GFF4398	0.19	-1.0
4,399,346	-		GFF4398	0.19	+1.0
4,399,361	-		GFF4398	0.20	-0.6
4,399,382	+		GFF4398	0.20	+1.3
4,399,390	-		GFF4398	0.21	-2.1
4,399,390	-		GFF4398	0.21	+0.6
4,399,397	+		GFF4398	0.21	-1.4
4,399,430	-		GFF4398	0.22	+0.8
4,399,430	-		GFF4398	0.22	-0.7
4,399,451	-		GFF4398	0.23	-1.1
4,399,452	-		GFF4398	0.23	-1.4
4,399,453	-		GFF4398	0.23	-1.1
4,399,486	+		GFF4398	0.24	-0.6
4,399,488	+		GFF4398	0.24	-1.8
4,399,488	+		GFF4398	0.24	-0.3
4,399,496	-		GFF4398	0.24	-1.0
4,399,550	+		GFF4398	0.26	+0.4
4,399,553	-		GFF4398	0.26	-0.2
4,399,571	+		GFF4398	0.26	+1.1
4,399,576	+		GFF4398	0.27	+0.5
4,399,579	-		GFF4398	0.27	-0.3
4,399,579	-		GFF4398	0.27	-0.7
4,399,623	+		GFF4398	0.28	-0.0
4,399,627	+		GFF4398	0.28	+0.2
4,399,629	-		GFF4398	0.28	-1.6
4,399,644	+		GFF4398	0.29	+1.0
4,399,650	+		GFF4398	0.29	+0.4
4,399,666	+		GFF4398	0.29	-0.9
4,399,671	+		GFF4398	0.30	+0.3
4,399,671	+		GFF4398	0.30	+1.2
4,399,671	+		GFF4398	0.30	-0.7
4,399,671	+		GFF4398	0.30	-0.5
4,399,679	+		GFF4398	0.30	-2.1
4,399,679	+		GFF4398	0.30	+0.7
4,399,679	-		GFF4398	0.30	+0.7
4,399,682	+		GFF4398	0.30	+1.5
4,399,690	+		GFF4398	0.30	+1.0
4,399,692	+		GFF4398	0.30	-0.4
4,399,698	-		GFF4398	0.31	-2.1
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