Strain Fitness in Sphingobium sp. HT1-2 around GFF4359

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,358,257	-				+0.2
4,358,257	-				-0.5
4,358,257	-				-0.3
4,358,266	+				-1.6
4,358,266	+				-1.5
4,358,266	+				-1.2
4,358,266	+				+0.1
4,358,274	-				-1.7
4,358,283	+				-0.4
4,358,305	+				+0.7
4,358,317	+				+0.5
4,358,326	-				+0.2
4,358,336	-				-0.6
4,358,344	+				-0.2
4,358,373	+				+1.1
4,358,381	-				-1.4
4,358,392	+				-1.1
4,358,392	+				-2.3
4,358,393	+				-0.7
4,358,393	+				-1.1
4,358,400	-				-0.3
4,358,400	-				+0.5
4,358,401	-				+0.6
4,358,401	-				+0.5
4,358,417	-				+0.6
4,358,417	-				-0.4
4,358,443	+				-2.8
4,358,443	+				-0.1
4,358,451	-		GFF4358	0.10	-0.5
4,358,451	-		GFF4358	0.10	+0.3
4,358,451	-		GFF4358	0.10	-0.5
4,358,475	+		GFF4358	0.13	-1.1
4,358,512	+		GFF4358	0.17	+0.4
4,358,512	+		GFF4358	0.17	-2.0
4,358,519	-		GFF4358	0.18	-2.3
4,358,566	-		GFF4358	0.23	+1.9
4,358,566	-		GFF4358	0.23	-0.9
4,358,578	+		GFF4358	0.24	-0.2
4,358,586	-		GFF4358	0.25	-0.7
4,358,609	+		GFF4358	0.28	-2.0
4,358,622	-		GFF4358	0.29	-0.8
4,358,637	-		GFF4358	0.31	-0.1
4,358,639	+		GFF4358	0.31	-0.5
4,358,639	+		GFF4358	0.31	+0.4
4,358,639	+		GFF4358	0.31	-2.5
4,358,647	-		GFF4358	0.32	-1.4
4,358,649	-		GFF4358	0.32	-1.8
4,358,653	+		GFF4358	0.33	-1.9
4,358,671	+		GFF4358	0.35	-1.6
4,358,671	+		GFF4358	0.35	+0.8
4,358,679	+		GFF4358	0.36	-0.5
4,358,679	-		GFF4358	0.36	+0.6
4,358,679	-		GFF4358	0.36	+0.6
4,358,685	-		GFF4358	0.36	+0.9
4,358,712	+		GFF4358	0.39	+0.5
4,358,717	+		GFF4358	0.40	+0.3
4,358,717	+		GFF4358	0.40	+0.5
4,358,717	+		GFF4358	0.40	-1.7
4,358,717	+		GFF4358	0.40	+0.4
4,358,717	+		GFF4358	0.40	+0.6
4,358,723	-		GFF4358	0.40	-0.1
4,358,725	-		GFF4358	0.41	-0.4
4,358,725	-		GFF4358	0.41	-0.3
4,358,725	-		GFF4358	0.41	-1.2
4,358,725	-		GFF4358	0.41	+0.2
4,358,728	+		GFF4358	0.41	+0.1
4,358,730	-		GFF4358	0.41	+0.4
4,358,733	+		GFF4358	0.42	-0.0
4,358,738	+		GFF4358	0.42	-1.1
4,358,750	-		GFF4358	0.44	+0.5
4,358,756	+		GFF4358	0.44	-0.9
4,358,766	+		GFF4358	0.45	-2.0
4,358,766	+		GFF4358	0.45	+0.5
4,358,766	+		GFF4358	0.45	-0.6
4,358,766	+		GFF4358	0.45	-0.6
4,358,766	+		GFF4358	0.45	-0.4
4,358,766	+		GFF4358	0.45	-0.0
4,358,766	+		GFF4358	0.45	-0.7
4,358,766	-		GFF4358	0.45	-0.5
4,358,772	+		GFF4358	0.46	+1.1
4,358,774	-		GFF4358	0.46	+1.2
4,358,774	-		GFF4358	0.46	-0.4
4,358,779	-		GFF4358	0.47	-0.5
4,358,790	-		GFF4358	0.48	-0.9
4,358,790	-		GFF4358	0.48	-0.5
4,358,819	+		GFF4358	0.51	-0.3
4,358,830	+		GFF4358	0.52	+0.6
4,358,846	+		GFF4358	0.54	+0.8
4,358,915	+		GFF4358	0.62	-0.8
4,358,915	+		GFF4358	0.62	-0.1
4,358,920	+		GFF4358	0.63	+0.9
4,358,920	+		GFF4358	0.63	-1.0
4,358,923	-		GFF4358	0.63	-0.6
4,358,928	-		GFF4358	0.63	+0.3
4,358,928	-		GFF4358	0.63	+0.1
4,358,944	+		GFF4358	0.65	-0.2
4,358,952	-		GFF4358	0.66	-2.1
4,358,952	-		GFF4358	0.66	+0.2
4,358,954	-		GFF4358	0.66	-1.5
4,358,966	-		GFF4358	0.68	+1.4
4,358,971	-		GFF4358	0.68	+0.0
4,358,979	+		GFF4358	0.69	-1.5
4,358,995	-		GFF4358	0.71	+0.3
4,359,001	-		GFF4358	0.72	+0.5
4,359,025	+		GFF4358	0.74	-0.8
4,359,025	+		GFF4358	0.74	+0.4
4,359,033	-		GFF4358	0.75	-0.4
4,359,033	-		GFF4358	0.75	+0.6
4,359,035	+		GFF4358	0.75	-0.4
4,359,035	+		GFF4358	0.75	-1.1
4,359,043	-		GFF4358	0.76	-1.2
4,359,058	+		GFF4358	0.78	-0.3
4,359,064	-		GFF4358	0.79	+0.0
4,359,084	-		GFF4358	0.81	-0.9
4,359,088	+		GFF4358	0.81	+0.2
4,359,106	+		GFF4358	0.83	-2.6
4,359,111	+		GFF4358	0.84	+1.6
4,359,111	+		GFF4358	0.84	-1.0
4,359,111	+		GFF4358	0.84	-1.4
4,359,111	+		GFF4358	0.84	+0.4
4,359,111	+		GFF4358	0.84	+0.0
4,359,111	+		GFF4358	0.84	-2.1
4,359,111	+		GFF4358	0.84	+1.2
4,359,111	+		GFF4358	0.84	-0.8
4,359,114	-		GFF4358	0.84	+0.9
4,359,119	-		GFF4358	0.85	+0.2
4,359,119	-		GFF4358	0.85	-0.0
4,359,119	-		GFF4358	0.85	-2.5
4,359,119	-		GFF4358	0.85	-0.9
4,359,119	-		GFF4358	0.85	+0.4
4,359,119	-		GFF4358	0.85	-0.8
4,359,119	-		GFF4358	0.85	+1.2
4,359,119	-		GFF4358	0.85	+0.2
4,359,121	-		GFF4358	0.85	-1.0
4,359,121	-		GFF4358	0.85	+1.5
4,359,128	+		GFF4358	0.86	+0.3
4,359,136	-		GFF4358	0.87	+0.8
4,359,169	+				-1.0
4,359,186	+				+0.1
4,359,256	-				+0.5
4,359,267	+				+0.6
4,359,274	+				-0.3
4,359,282	-				+0.7
4,359,296	+				-0.4
4,359,298	+				-0.9
4,359,304	-				-1.6
4,359,305	-				+0.1
4,359,319	+				+0.0
4,359,319	+				+0.4
4,359,319	-				-1.8
4,359,319	-				+0.3
4,359,327	-				-0.9
4,359,327	-				-1.2
4,359,327	-				-0.2
4,359,329	+				-0.7
4,359,329	+				-0.6
4,359,350	+				-0.8
4,359,387	+				-0.6
4,359,395	-				+0.4
4,359,396	-				+0.7
4,359,399	+				-0.4
4,359,400	+				-0.6
4,359,401	-				-0.1
4,359,406	+				-1.0
4,359,418	+		GFF4359	0.10	+0.4
4,359,419	-		GFF4359	0.10	+1.0
4,359,457	+		GFF4359	0.13	-0.4
4,359,458	+		GFF4359	0.13	-0.6
4,359,477	+		GFF4359	0.14	-2.4
4,359,477	+		GFF4359	0.14	+1.2
4,359,477	+		GFF4359	0.14	+0.2
4,359,477	+		GFF4359	0.14	-2.5
4,359,477	+		GFF4359	0.14	+0.0
4,359,518	+		GFF4359	0.16	-0.4
4,359,518	+		GFF4359	0.16	-1.7
4,359,526	-		GFF4359	0.17	+0.9
4,359,527	+		GFF4359	0.17	+1.8
4,359,556	+		GFF4359	0.19	-0.4
4,359,558	+		GFF4359	0.19	+0.2
4,359,564	+		GFF4359	0.19	-1.6
4,359,568	+		GFF4359	0.19	-1.4
4,359,574	-		GFF4359	0.20	+0.4
4,359,574	-		GFF4359	0.20	+0.9
4,359,576	-		GFF4359	0.20	-0.4
4,359,593	+		GFF4359	0.21	+0.2
4,359,594	-		GFF4359	0.21	-1.0
4,359,594	-		GFF4359	0.21	-0.2
4,359,601	-		GFF4359	0.21	-0.9
4,359,601	-		GFF4359	0.21	+0.4
4,359,617	+		GFF4359	0.22	+0.1
4,359,622	+		GFF4359	0.23	+0.6
4,359,625	-		GFF4359	0.23	+1.4
4,359,626	+		GFF4359	0.23	-1.7
4,359,627	+		GFF4359	0.23	-0.5
4,359,634	+		GFF4359	0.23	-1.3
4,359,654	-		GFF4359	0.25	-0.4
4,359,659	+		GFF4359	0.25	-0.5
4,359,659	-		GFF4359	0.25	-0.3
4,359,664	+		GFF4359	0.25	-0.7
4,359,674	+		GFF4359	0.26	-0.1
4,359,740	+		GFF4359	0.30	+0.0
4,359,740	+		GFF4359	0.30	-1.5
4,359,740	+		GFF4359	0.30	+0.3
4,359,742	+		GFF4359	0.30	-1.5
4,359,748	-		GFF4359	0.30	-1.6
4,359,751	+		GFF4359	0.31	+0.7
4,359,761	+		GFF4359	0.31	+0.9
4,359,761	+		GFF4359	0.31	+0.9
4,359,761	+		GFF4359	0.31	-0.5
4,359,761	+		GFF4359	0.31	-2.0
4,359,761	+		GFF4359	0.31	-0.3
4,359,761	+		GFF4359	0.31	+0.3
4,359,761	+		GFF4359	0.31	-0.7
4,359,761	+		GFF4359	0.31	-0.8
4,359,761	+		GFF4359	0.31	+0.6
4,359,764	-		GFF4359	0.31	+0.8
4,359,769	-		GFF4359	0.32	+1.0
4,359,769	-		GFF4359	0.32	-1.4
4,359,769	-		GFF4359	0.32	+1.5
4,359,769	-		GFF4359	0.32	-2.1
4,359,769	-		GFF4359	0.32	+0.6
4,359,769	-		GFF4359	0.32	+0.5
4,359,776	+		GFF4359	0.32	-0.4
4,359,786	+		GFF4359	0.33	+1.2
4,359,811	+		GFF4359	0.34	+0.5
4,359,816	+		GFF4359	0.35	+0.5
4,359,816	+		GFF4359	0.35	+0.1
4,359,820	+		GFF4359	0.35	-0.1
4,359,824	-		GFF4359	0.35	+1.1
4,359,825	+		GFF4359	0.35	+0.2
4,359,828	-		GFF4359	0.35	+1.5
4,359,828	-		GFF4359	0.35	+0.6
4,359,835	+		GFF4359	0.36	-0.2
4,359,846	+		GFF4359	0.36	+0.1
4,359,867	+		GFF4359	0.38	+0.4
4,359,867	+		GFF4359	0.38	+0.5
4,359,867	+		GFF4359	0.38	-0.4
4,359,867	+		GFF4359	0.38	-2.2
4,359,885	-		GFF4359	0.39	-0.1
4,359,888	+		GFF4359	0.39	-0.3
4,359,892	+		GFF4359	0.39	+0.6
4,359,900	-		GFF4359	0.40	+0.5
4,359,912	+		GFF4359	0.40	+0.4
4,359,912	+		GFF4359	0.40	+0.4
4,359,912	+		GFF4359	0.40	+0.1
4,359,912	+		GFF4359	0.40	-0.4
4,359,912	+		GFF4359	0.40	-0.8
4,359,912	+		GFF4359	0.40	-1.1
4,359,920	-		GFF4359	0.41	-0.6
4,359,920	-		GFF4359	0.41	-0.5
4,359,920	-		GFF4359	0.41	-0.7
4,359,920	-		GFF4359	0.41	+0.3
4,359,920	-		GFF4359	0.41	-0.5
4,359,928	+		GFF4359	0.41	-0.5
4,359,928	+		GFF4359	0.41	-3.0
4,359,928	+		GFF4359	0.41	+0.3
4,359,936	-		GFF4359	0.42	-0.0
4,359,936	-		GFF4359	0.42	+2.0
4,359,938	+		GFF4359	0.42	+0.4
4,359,938	+		GFF4359	0.42	-1.1
4,359,938	+		GFF4359	0.42	-0.3
4,359,946	-		GFF4359	0.43	-0.2
4,359,946	-		GFF4359	0.43	-0.9
4,359,946	-		GFF4359	0.43	+0.5
4,359,946	-		GFF4359	0.43	+0.4
4,359,953	-		GFF4359	0.43	+0.6
4,359,973	+		GFF4359	0.44	+0.2
4,359,979	-		GFF4359	0.45	+0.9
4,359,998	-		GFF4359	0.46	-1.6
4,360,019	+		GFF4359	0.47	+0.9
4,360,021	+		GFF4359	0.47	+0.1
4,360,022	-		GFF4359	0.47	-0.5
4,360,027	-		GFF4359	0.47	+1.2
4,360,051	-		GFF4359	0.49	+0.4
4,360,066	+		GFF4359	0.50	-0.2
4,360,085	-		GFF4359	0.51	-0.6
4,360,096	+		GFF4359	0.52	-0.3
4,360,101	+		GFF4359	0.52	+0.3
4,360,109	+		GFF4359	0.52	-0.5
4,360,109	-		GFF4359	0.52	-1.9
4,360,109	-		GFF4359	0.52	+0.3
4,360,109	-		GFF4359	0.52	-0.1
4,360,109	-		GFF4359	0.52	-0.8
4,360,114	+		GFF4359	0.53	-0.6
4,360,122	-		GFF4359	0.53	+0.1
4,360,122	-		GFF4359	0.53	-1.9
4,360,147	-		GFF4359	0.55	-2.8
4,360,147	-		GFF4359	0.55	-0.8
4,360,147	-		GFF4359	0.55	-2.0
4,360,147	-		GFF4359	0.55	+0.0
4,360,147	-		GFF4359	0.55	-0.3
4,360,147	-		GFF4359	0.55	-0.7
4,360,176	+		GFF4359	0.57	-1.9
4,360,188	+		GFF4359	0.57	-1.9
4,360,188	+		GFF4359	0.57	-0.8
4,360,188	+		GFF4359	0.57	-3.1
4,360,188	+		GFF4359	0.57	+0.5
4,360,188	+		GFF4359	0.57	-1.4
4,360,188	+		GFF4359	0.57	-0.5
4,360,188	+		GFF4359	0.57	-0.8
4,360,196	-		GFF4359	0.58	+0.4
4,360,196	-		GFF4359	0.58	-3.0
4,360,196	-		GFF4359	0.58	-0.5
4,360,196	-		GFF4359	0.58	-1.8
4,360,196	-		GFF4359	0.58	+0.1
4,360,196	-		GFF4359	0.58	-0.4
4,360,196	-		GFF4359	0.58	+0.3
4,360,196	-		GFF4359	0.58	-0.4
4,360,196	-		GFF4359	0.58	+0.8
4,360,198	-		GFF4359	0.58	-1.4
4,360,284	-		GFF4359	0.63	-1.7
4,360,298	+		GFF4359	0.64	+0.5
4,360,337	+		GFF4359	0.66	-1.0
4,360,337	+		GFF4359	0.66	-0.8
4,360,348	-		GFF4359	0.67	-0.4
4,360,356	+		GFF4359	0.68	+0.2
4,360,361	+		GFF4359	0.68	-2.2
4,360,361	+		GFF4359	0.68	-1.6
4,360,363	+		GFF4359	0.68	-0.6
4,360,364	-		GFF4359	0.68	-0.6
4,360,364	-		GFF4359	0.68	-0.9
4,360,405	+		GFF4359	0.71	+0.8
4,360,406	-		GFF4359	0.71	-3.0
4,360,412	-		GFF4359	0.71	-2.8
4,360,429	+		GFF4359	0.72	-0.5
4,360,437	-		GFF4359	0.73	-0.1
4,360,437	-		GFF4359	0.73	-2.7
4,360,447	-		GFF4359	0.73	+0.0
4,360,494	+		GFF4359	0.76	-0.1
4,360,494	+		GFF4359	0.76	-0.2
4,360,494	+		GFF4359	0.76	-0.4
4,360,494	+		GFF4359	0.76	-1.4
4,360,496	+		GFF4359	0.76	-0.3
4,360,496	+		GFF4359	0.76	-0.8
4,360,502	-		GFF4359	0.77	-2.2
4,360,502	-		GFF4359	0.77	+1.0
4,360,503	+		GFF4359	0.77	+0.8
4,360,503	+		GFF4359	0.77	-0.3
4,360,503	+		GFF4359	0.77	+0.1
4,360,503	+		GFF4359	0.77	-2.5
4,360,503	+		GFF4359	0.77	-0.8
4,360,503	+		GFF4359	0.77	-1.1
4,360,503	+		GFF4359	0.77	-0.6
4,360,503	+		GFF4359	0.77	+0.6
4,360,504	-		GFF4359	0.77	-0.0
4,360,504	-		GFF4359	0.77	-0.1
4,360,511	-		GFF4359	0.77	-0.2
4,360,511	-		GFF4359	0.77	+0.4
4,360,511	-		GFF4359	0.77	+0.1
4,360,511	-		GFF4359	0.77	-0.2
4,360,511	-		GFF4359	0.77	-1.5
4,360,511	-		GFF4359	0.77	+1.0
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4,360,616	-		GFF4359	0.83	-1.5
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4,360,626	-		GFF4359	0.84	-1.6
4,360,626	-		GFF4359	0.84	-2.7
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4,360,626	-		GFF4359	0.84	-0.4
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4,360,646	-		GFF4359	0.85	-0.4
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4,360,656	+		GFF4359	0.86	-0.2
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4,360,664	-		GFF4359	0.86	-0.6
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4,360,694	+		GFF4359	0.88	-0.9
4,360,708	+		GFF4359	0.89	-0.8
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4,360,745	-				-1.1
4,360,746	-				-0.5
4,360,753	+				-1.7
4,360,753	+				+0.5
4,360,753	+				-1.0
4,360,753	+				+0.4
4,360,753	+				-0.5
4,360,753	+				-0.4
4,360,761	-				-0.4
4,360,761	-				-0.3
4,360,761	-				+0.4
4,360,761	-				+0.6
4,360,761	-				-1.5
4,360,761	-				-1.7
4,360,761	-				-0.3
4,360,761	-				+0.3
4,360,761	-				-0.2
4,360,761	-				+0.5
4,360,770	+				+0.5
4,360,770	+				-1.2
4,360,770	+				+0.1
4,360,770	+				-0.5
4,360,770	+				+1.2
4,360,778	-				-1.4
4,360,778	-				-1.5
4,360,778	-				+0.3
4,360,778	-				-0.3
4,360,778	-				+0.4
4,360,778	-				+0.1
4,360,778	-				+1.2
4,360,778	-				-0.4
4,360,778	-				+0.3
4,360,778	-				-0.4
4,360,778	-				+0.2
4,360,778	-				-1.9
4,360,803	-				-1.4
4,360,822	+				-1.5
4,360,822	+				-0.4
4,360,840	-				-0.4
4,360,846	+				-0.9
4,360,846	+				+0.3
4,360,854	+				-0.0
4,360,854	+				+0.2
4,360,862	-				-1.2
4,360,862	-				-0.5
4,360,862	-				+0.2
4,360,873	+				-0.0
4,360,874	-				-0.5
4,360,887	-				-0.4
4,360,923	-				-1.2
4,360,928	-				-1.7
4,360,943	+				+0.5
4,360,953	+				-2.3
4,360,955	-				+1.0
4,360,961	-				+0.2
4,360,984	-				-2.5
4,360,984	-				-0.3
4,360,991	+				+0.3
4,361,002	+				+0.8
4,361,002	+				+0.2
4,361,002	+				+1.8
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4,361,005	-				-0.4
4,361,011	-				+1.2
4,361,011	-				-1.6
4,361,050	+				-0.4
4,361,068	+				-0.5
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4,361,239	+		GFF4360	0.44	-1.4
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4,361,252	+		GFF4360	0.47	-1.6
4,361,252	+		GFF4360	0.47	+1.1
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4,361,260	-		GFF4360	0.49	+0.3
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4,361,329	-		GFF4360	0.63	-2.0
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4,361,370	+		GFF4360	0.71	-2.7
4,361,370	+		GFF4360	0.71	-1.0
4,361,378	-		GFF4360	0.73	-0.3
4,361,378	-		GFF4360	0.73	-2.4
4,361,379	+		GFF4360	0.73	-1.5
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4,361,420	+		GFF4360	0.82	-1.7
4,361,420	+		GFF4360	0.82	-1.7
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4,361,437	-		GFF4360	0.85	-2.4
4,361,464	+				+0.1
4,361,468	+				-0.5
4,361,468	+				-0.1
4,361,476	-				-0.1
4,361,486	-				-1.9
4,361,487	+				-2.1
4,361,495	+				-0.4
4,361,495	+				+0.0
4,361,495	+				-2.9
4,361,495	+				-2.1
4,361,495	+				-0.1
4,361,495	+				-1.2
4,361,495	+				-0.5
4,361,503	-				-0.6
4,361,503	-				-1.1
4,361,503	-				+1.2
4,361,503	-				-0.6
4,361,503	-				+0.0
4,361,503	-				-1.1
4,361,507	+				+0.2
4,361,507	+				-1.0
4,361,513	-				+0.5
4,361,515	+				-0.9
4,361,516	+				-1.0
4,361,524	-				-1.1
4,361,524	-				-1.2
4,361,528	+				-0.2
4,361,531	-				-1.0
4,361,536	-				-1.1
4,361,542	+				-0.0
4,361,542	+				-0.1
4,361,544	+				-1.8
4,361,544	+				+0.2
4,361,550	-				-0.5
4,361,550	-				-0.0
4,361,550	-				-1.5
4,361,552	-				-2.1
4,361,552	-				+0.4
4,361,552	-				-0.5
4,361,557	-				+0.6
4,361,562	-				+1.0
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4,361,610	+				-1.5
4,361,610	+				+0.1
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4,361,640	+				-1.1
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4,361,640	-				-0.5
4,361,690	+		GFF4361	0.13	-0.6
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4,361,756	-		GFF4361	0.20	-1.9
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4,361,807	+		GFF4361	0.26	-1.6
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