Strain Fitness in Sphingobium sp. HT1-2 around GFF4180

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,197,565	+		GFF4179	0.59	-0.7
4,197,575	+		GFF4179	0.60	-0.3
4,197,588	+		GFF4179	0.61	-0.6
4,197,591	-		GFF4179	0.61	+0.2
4,197,592	+		GFF4179	0.61	+0.1
4,197,593	+		GFF4179	0.61	-2.2
4,197,593	+		GFF4179	0.61	-0.5
4,197,593	+		GFF4179	0.61	+0.2
4,197,597	+		GFF4179	0.61	+0.9
4,197,601	-		GFF4179	0.62	+0.9
4,197,601	-		GFF4179	0.62	-0.9
4,197,601	-		GFF4179	0.62	+0.7
4,197,601	-		GFF4179	0.62	+0.5
4,197,601	-		GFF4179	0.62	-0.3
4,197,606	-		GFF4179	0.62	+1.0
4,197,621	+		GFF4179	0.63	-0.6
4,197,621	+		GFF4179	0.63	-1.0
4,197,629	-		GFF4179	0.64	-1.8
4,197,629	-		GFF4179	0.64	-0.8
4,197,629	-		GFF4179	0.64	+0.2
4,197,632	+		GFF4179	0.64	+0.4
4,197,632	+		GFF4179	0.64	+0.0
4,197,640	-		GFF4179	0.64	-2.3
4,197,642	+		GFF4179	0.65	+0.0
4,197,642	+		GFF4179	0.65	+0.1
4,197,645	-		GFF4179	0.65	-1.3
4,197,650	-		GFF4179	0.65	-0.3
4,197,650	-		GFF4179	0.65	-1.8
4,197,659	+		GFF4179	0.66	+0.9
4,197,659	+		GFF4179	0.66	+0.4
4,197,659	+		GFF4179	0.66	-2.8
4,197,665	-		GFF4179	0.66	+0.4
4,197,667	-		GFF4179	0.66	+0.7
4,197,667	-		GFF4179	0.66	-0.1
4,197,684	+		GFF4179	0.68	+1.7
4,197,684	+		GFF4179	0.68	-0.2
4,197,692	-		GFF4179	0.68	+0.0
4,197,692	-		GFF4179	0.68	-0.2
4,197,692	-		GFF4179	0.68	+0.4
4,197,759	+		GFF4179	0.73	-0.1
4,197,768	-		GFF4179	0.74	-0.1
4,197,768	-		GFF4179	0.74	+0.7
4,197,775	+		GFF4179	0.74	-1.3
4,197,775	+		GFF4179	0.74	+0.2
4,197,775	+		GFF4179	0.74	-1.5
4,197,775	+		GFF4179	0.74	-0.9
4,197,775	+		GFF4179	0.74	+0.0
4,197,775	+		GFF4179	0.74	-2.2
4,197,778	-		GFF4179	0.74	-1.8
4,197,783	-		GFF4179	0.75	-0.8
4,197,783	-		GFF4179	0.75	-1.6
4,197,783	-		GFF4179	0.75	-1.5
4,197,801	-		GFF4179	0.76	-1.6
4,197,812	+		GFF4179	0.77	-2.1
4,197,812	+		GFF4179	0.77	-0.7
4,197,820	-		GFF4179	0.77	+0.1
4,197,820	-		GFF4179	0.77	-0.8
4,197,820	-		GFF4179	0.77	-0.3
4,197,820	-		GFF4179	0.77	-2.3
4,197,820	-		GFF4179	0.77	+1.2
4,197,820	-		GFF4179	0.77	+0.2
4,197,820	-		GFF4179	0.77	+1.5
4,197,843	+		GFF4179	0.79	-0.8
4,197,843	-		GFF4179	0.79	-1.0
4,197,851	-		GFF4179	0.80	-0.5
4,197,851	-		GFF4179	0.80	+0.4
4,197,899	+		GFF4179	0.83	-0.4
4,197,907	+		GFF4179	0.84	-1.6
4,197,956	-		GFF4179	0.87	-1.8
4,197,963	+		GFF4179	0.88	+0.2
4,197,963	+		GFF4179	0.88	+0.6
4,197,963	+		GFF4179	0.88	-1.0
4,197,963	+		GFF4179	0.88	-0.6
4,197,963	+		GFF4179	0.88	-0.7
4,197,971	-		GFF4179	0.88	+1.1
4,197,973	+		GFF4179	0.89	-1.3
4,197,973	+		GFF4179	0.89	-1.0
4,197,973	+		GFF4179	0.89	+0.0
4,197,973	+		GFF4179	0.89	-0.6
4,197,973	+		GFF4179	0.89	-1.0
4,197,973	+		GFF4179	0.89	+1.7
4,197,981	-		GFF4179	0.89	-1.5
4,197,981	-		GFF4179	0.89	+0.4
4,197,981	-		GFF4179	0.89	-2.8
4,197,981	-		GFF4179	0.89	-1.5
4,197,981	-		GFF4179	0.89	-1.7
4,197,981	-		GFF4179	0.89	-1.3
4,197,981	-		GFF4179	0.89	-0.1
4,197,981	-		GFF4179	0.89	+1.0
4,197,981	-		GFF4179	0.89	-0.2
4,197,981	-		GFF4179	0.89	-0.3
4,197,981	-		GFF4179	0.89	-1.8
4,197,981	-		GFF4179	0.89	-0.9
4,197,988	-		GFF4179	0.90	+1.7
4,198,033	+				-0.8
4,198,037	+				-2.7
4,198,059	-				+0.3
4,198,118	-				-0.8
4,198,186	-				+1.2
4,198,217	-				-2.5
4,198,217	-				-0.2
4,198,259	+				-1.2
4,198,288	-				-1.3
4,198,288	-				-3.2
4,198,354	-				-1.3
4,198,366	-				+0.1
4,198,374	-				-0.6
4,198,374	-				-0.0
4,198,383	-				-0.1
4,198,391	-				-0.1
4,198,460	+				-0.8
4,198,460	+				-0.5
4,198,468	+				-0.2
4,198,540	-				-0.3
4,198,549	+				-0.5
4,198,557	+				-0.2
4,198,557	+				+0.9
4,198,559	-				-1.1
4,198,559	-				-0.2
4,198,565	-				+0.7
4,198,566	+				-0.9
4,198,574	+				+1.9
4,198,578	+				+1.2
4,198,581	+				-0.7
4,198,589	-				+0.3
4,198,594	-				-1.5
4,198,624	+				-0.0
4,198,624	+				-0.3
4,198,624	+				-1.7
4,198,632	-				-1.4
4,198,656	-				-1.1
4,198,705	+		GFF4180	0.12	-0.3
4,198,706	+		GFF4180	0.12	-0.8
4,198,727	-		GFF4180	0.13	-0.4
4,198,728	-		GFF4180	0.13	+1.9
4,198,742	-		GFF4180	0.15	-1.1
4,198,744	+		GFF4180	0.15	-0.8
4,198,744	+		GFF4180	0.15	+0.2
4,198,744	+		GFF4180	0.15	-0.1
4,198,745	-		GFF4180	0.15	+0.1
4,198,752	-		GFF4180	0.15	+0.1
4,198,767	-		GFF4180	0.16	+0.2
4,198,791	+		GFF4180	0.18	-1.0
4,198,791	+		GFF4180	0.18	-0.8
4,198,796	+		GFF4180	0.19	-1.6
4,198,796	+		GFF4180	0.19	-0.8
4,198,796	-		GFF4180	0.19	-2.3
4,198,801	+		GFF4180	0.19	+0.5
4,198,804	-		GFF4180	0.19	-3.2
4,198,815	+		GFF4180	0.20	-0.9
4,198,818	+		GFF4180	0.20	-2.3
4,198,824	-		GFF4180	0.21	+1.1
4,198,826	+		GFF4180	0.21	-1.3
4,198,834	-		GFF4180	0.22	+0.1
4,198,839	+		GFF4180	0.22	+0.1
4,198,850	+		GFF4180	0.23	+0.1
4,198,877	-		GFF4180	0.25	-0.1
4,198,877	-		GFF4180	0.25	+0.2
4,198,895	-		GFF4180	0.26	+1.1
4,198,895	-		GFF4180	0.26	+1.1
4,198,895	-		GFF4180	0.26	+0.4
4,198,914	+		GFF4180	0.28	-1.8
4,198,919	+		GFF4180	0.28	-1.2
4,198,922	-		GFF4180	0.28	+1.2
4,198,927	-		GFF4180	0.29	-0.5
4,198,927	-		GFF4180	0.29	+1.5
4,198,932	-		GFF4180	0.29	+0.5
4,198,933	-		GFF4180	0.29	+0.4
4,198,947	+		GFF4180	0.30	+0.2
4,198,947	+		GFF4180	0.30	-0.0
4,198,947	+		GFF4180	0.30	-1.2
4,198,949	-		GFF4180	0.30	-0.0
4,198,959	-		GFF4180	0.31	-0.7
4,199,015	-		GFF4180	0.35	+0.2
4,199,017	+		GFF4180	0.36	-2.5
4,199,017	+		GFF4180	0.36	-1.3
4,199,017	+		GFF4180	0.36	-0.2
4,199,020	-		GFF4180	0.36	-0.3
4,199,022	+		GFF4180	0.36	-1.2
4,199,025	-		GFF4180	0.36	-0.1
4,199,025	-		GFF4180	0.36	-0.8
4,199,025	-		GFF4180	0.36	-0.4
4,199,025	-		GFF4180	0.36	-2.2
4,199,025	-		GFF4180	0.36	-0.7
4,199,025	-		GFF4180	0.36	-1.1
4,199,029	+		GFF4180	0.37	-0.3
4,199,029	+		GFF4180	0.37	-1.2
4,199,029	+		GFF4180	0.37	+0.8
4,199,029	+		GFF4180	0.37	-1.8
4,199,035	-		GFF4180	0.37	-0.5
4,199,037	-		GFF4180	0.37	-1.7
4,199,037	-		GFF4180	0.37	-0.3
4,199,037	-		GFF4180	0.37	+0.3
4,199,037	-		GFF4180	0.37	+0.4
4,199,037	-		GFF4180	0.37	+0.4
4,199,037	-		GFF4180	0.37	-0.2
4,199,037	-		GFF4180	0.37	-0.0
4,199,037	-		GFF4180	0.37	-0.1
4,199,037	-		GFF4180	0.37	+1.1
4,199,038	+		GFF4180	0.37	+0.2
4,199,038	+		GFF4180	0.37	-0.9
4,199,061	+		GFF4180	0.39	-0.8
4,199,061	+		GFF4180	0.39	+1.0
4,199,061	+		GFF4180	0.39	-0.8
4,199,061	+		GFF4180	0.39	-0.3
4,199,069	-		GFF4180	0.40	+0.7
4,199,082	-		GFF4180	0.41	+0.4
4,199,112	+		GFF4180	0.43	-1.2
4,199,123	+		GFF4180	0.44	-1.7
4,199,123	+		GFF4180	0.44	-0.3
4,199,126	-		GFF4180	0.44	-1.2
4,199,131	-		GFF4180	0.44	+0.1
4,199,140	+		GFF4180	0.45	-0.1
4,199,148	-		GFF4180	0.46	+1.0
4,199,154	-		GFF4180	0.46	+0.4
4,199,158	+		GFF4180	0.46	-0.6
4,199,158	+		GFF4180	0.46	-0.8
4,199,163	+		GFF4180	0.47	-0.7
4,199,166	-		GFF4180	0.47	-1.0
4,199,166	-		GFF4180	0.47	-0.1
4,199,166	-		GFF4180	0.47	-2.3
4,199,171	+		GFF4180	0.47	+0.1
4,199,171	-		GFF4180	0.47	+0.3
4,199,178	-		GFF4180	0.48	-0.3
4,199,182	+		GFF4180	0.48	+0.6
4,199,182	+		GFF4180	0.48	-0.3
4,199,182	+		GFF4180	0.48	+1.5
4,199,182	+		GFF4180	0.48	-2.0
4,199,182	+		GFF4180	0.48	-0.3
4,199,189	+		GFF4180	0.49	+0.0
4,199,189	+		GFF4180	0.49	-0.2
4,199,190	-		GFF4180	0.49	+0.4
4,199,190	-		GFF4180	0.49	-0.6
4,199,194	+		GFF4180	0.49	+0.1
4,199,194	+		GFF4180	0.49	-0.9
4,199,202	-		GFF4180	0.50	+0.5
4,199,222	-		GFF4180	0.51	+0.1
4,199,224	+		GFF4180	0.52	-1.6
4,199,224	+		GFF4180	0.52	+1.1
4,199,224	+		GFF4180	0.52	-0.4
4,199,224	+		GFF4180	0.52	+0.9
4,199,224	+		GFF4180	0.52	-2.8
4,199,224	+		GFF4180	0.52	+0.4
4,199,224	+		GFF4180	0.52	-2.0
4,199,224	+		GFF4180	0.52	-0.6
4,199,224	+		GFF4180	0.52	-1.0
4,199,224	+		GFF4180	0.52	+0.0
4,199,224	+		GFF4180	0.52	+0.8
4,199,224	+		GFF4180	0.52	+1.2
4,199,224	+		GFF4180	0.52	-0.1
4,199,224	+		GFF4180	0.52	-0.2
4,199,224	+		GFF4180	0.52	+0.9
4,199,224	+		GFF4180	0.52	-2.1
4,199,224	+		GFF4180	0.52	-0.3
4,199,224	+		GFF4180	0.52	+0.7
4,199,224	+		GFF4180	0.52	+0.9
4,199,224	+		GFF4180	0.52	-1.0
4,199,224	+		GFF4180	0.52	+0.0
4,199,224	+		GFF4180	0.52	+1.6
4,199,224	+		GFF4180	0.52	+0.7
4,199,224	+		GFF4180	0.52	-0.2
4,199,224	+		GFF4180	0.52	-2.4
4,199,224	+		GFF4180	0.52	-0.2
4,199,232	-		GFF4180	0.52	+0.8
4,199,232	-		GFF4180	0.52	-0.3
4,199,232	-		GFF4180	0.52	-1.5
4,199,232	-		GFF4180	0.52	-0.4
4,199,232	-		GFF4180	0.52	-0.5
4,199,232	-		GFF4180	0.52	-0.0
4,199,232	-		GFF4180	0.52	+0.2
4,199,232	-		GFF4180	0.52	-1.3
4,199,232	-		GFF4180	0.52	-0.2
4,199,232	-		GFF4180	0.52	+0.2
4,199,232	-		GFF4180	0.52	-2.2
4,199,232	-		GFF4180	0.52	-1.3
4,199,232	-		GFF4180	0.52	+1.0
4,199,232	-		GFF4180	0.52	+0.3
4,199,232	-		GFF4180	0.52	+0.8
4,199,232	-		GFF4180	0.52	-1.9
4,199,232	-		GFF4180	0.52	-2.6
4,199,232	-		GFF4180	0.52	-0.1
4,199,232	-		GFF4180	0.52	+0.7
4,199,232	-		GFF4180	0.52	-0.4
4,199,232	-		GFF4180	0.52	-2.6
4,199,232	-		GFF4180	0.52	-0.2
4,199,232	-		GFF4180	0.52	+0.7
4,199,232	-		GFF4180	0.52	-0.4
4,199,232	-		GFF4180	0.52	-1.0
4,199,232	-		GFF4180	0.52	+0.1
4,199,232	-		GFF4180	0.52	-0.1
4,199,232	-		GFF4180	0.52	+0.5
4,199,237	-		GFF4180	0.53	-1.3
4,199,238	+		GFF4180	0.53	+0.2
4,199,246	-		GFF4180	0.53	+0.0
4,199,247	+		GFF4180	0.53	-1.7
4,199,270	+		GFF4180	0.55	-2.1
4,199,278	-		GFF4180	0.56	-0.4
4,199,284	+		GFF4180	0.56	-0.4
4,199,285	-		GFF4180	0.56	-0.7
4,199,292	-		GFF4180	0.57	+0.3
4,199,292	-		GFF4180	0.57	-0.5
4,199,292	-		GFF4180	0.57	-2.1
4,199,292	-		GFF4180	0.57	-0.5
4,199,292	-		GFF4180	0.57	+0.4
4,199,293	-		GFF4180	0.57	+0.9
4,199,299	+		GFF4180	0.57	-0.9
4,199,323	+		GFF4180	0.59	+0.3
4,199,352	+		GFF4180	0.61	-1.6
4,199,360	+		GFF4180	0.62	-2.0
4,199,360	+		GFF4180	0.62	-0.3
4,199,360	+		GFF4180	0.62	+0.6
4,199,361	+		GFF4180	0.62	-0.0
4,199,361	+		GFF4180	0.62	+0.7
4,199,361	+		GFF4180	0.62	-3.2
4,199,361	+		GFF4180	0.62	-1.6
4,199,361	+		GFF4180	0.62	-0.4
4,199,361	+		GFF4180	0.62	-0.6
4,199,361	+		GFF4180	0.62	+1.2
4,199,368	-		GFF4180	0.63	-0.5
4,199,368	-		GFF4180	0.63	-1.0
4,199,368	-		GFF4180	0.63	-0.2
4,199,368	-		GFF4180	0.63	-0.8
4,199,368	-		GFF4180	0.63	-0.6
4,199,368	-		GFF4180	0.63	-0.0
4,199,369	-		GFF4180	0.63	+0.0
4,199,369	-		GFF4180	0.63	+0.5
4,199,373	-		GFF4180	0.63	+0.2
4,199,392	-		GFF4180	0.64	-0.9
4,199,397	+		GFF4180	0.65	+0.2
4,199,397	-		GFF4180	0.65	-0.4
4,199,399	-		GFF4180	0.65	+0.4
4,199,403	+		GFF4180	0.65	-0.2
4,199,409	+		GFF4180	0.66	-0.2
4,199,409	+		GFF4180	0.66	-1.1
4,199,417	-		GFF4180	0.66	-0.3
4,199,417	-		GFF4180	0.66	-1.3
4,199,417	-		GFF4180	0.66	+0.2
4,199,417	-		GFF4180	0.66	+0.6
4,199,441	+		GFF4180	0.68	-0.3
4,199,441	+		GFF4180	0.68	-1.5
4,199,441	+		GFF4180	0.68	+0.3
4,199,441	+		GFF4180	0.68	-1.6
4,199,442	+		GFF4180	0.68	-2.2
4,199,447	+		GFF4180	0.69	+0.7
4,199,447	+		GFF4180	0.69	-0.2
4,199,447	+		GFF4180	0.69	+0.5
4,199,455	-		GFF4180	0.69	-0.7
4,199,457	+		GFF4180	0.69	+1.6
4,199,457	+		GFF4180	0.69	+1.0
4,199,457	+		GFF4180	0.69	-1.6
4,199,457	+		GFF4180	0.69	+0.2
4,199,459	-		GFF4180	0.70	-0.8
4,199,465	-		GFF4180	0.70	+1.3
4,199,465	-		GFF4180	0.70	-1.7
4,199,480	-		GFF4180	0.71	-1.4
4,199,509	+		GFF4180	0.73	-1.9
4,199,509	+		GFF4180	0.73	-1.6
4,199,519	+		GFF4180	0.74	-0.5
4,199,529	+		GFF4180	0.75	-0.6
4,199,529	+		GFF4180	0.75	+0.7
4,199,529	+		GFF4180	0.75	-1.1
4,199,529	+		GFF4180	0.75	-2.2
4,199,529	+		GFF4180	0.75	-0.8
4,199,537	-		GFF4180	0.76	+0.4
4,199,537	-		GFF4180	0.76	+0.7
4,199,552	+		GFF4180	0.77	+0.2
4,199,565	+		GFF4180	0.78	-0.5
4,199,565	+		GFF4180	0.78	-0.5
4,199,565	+		GFF4180	0.78	+0.0
4,199,573	-		GFF4180	0.78	-0.6
4,199,573	-		GFF4180	0.78	-0.1
4,199,573	-		GFF4180	0.78	-0.3
4,199,573	-		GFF4180	0.78	-1.5
4,199,573	-		GFF4180	0.78	-0.8
4,199,575	+		GFF4180	0.78	-1.5
4,199,588	+		GFF4180	0.79	-2.2
4,199,588	+		GFF4180	0.79	+0.0
4,199,590	+		GFF4180	0.80	-0.0
4,199,596	-		GFF4180	0.80	+0.3
4,199,598	-		GFF4180	0.80	-1.6
4,199,617	+		GFF4180	0.82	+0.2
4,199,618	+		GFF4180	0.82	-1.8
4,199,618	+		GFF4180	0.82	-0.9
4,199,626	-		GFF4180	0.82	-0.3
4,199,626	-		GFF4180	0.82	+0.4
4,199,664	-		GFF4180	0.85	-0.2
4,199,672	+		GFF4180	0.86	+0.8
4,199,672	+		GFF4180	0.86	+1.5
4,199,672	+		GFF4180	0.86	-0.1
4,199,680	-		GFF4180	0.87	+0.7
4,199,691	+		GFF4180	0.87	+0.2
4,199,692	-		GFF4180	0.87	-0.5
4,199,709	-		GFF4180	0.89	-0.2
4,199,713	+		GFF4180	0.89	-1.2
4,199,714	+		GFF4180	0.89	+1.2
4,199,714	+		GFF4180	0.89	-0.5
4,199,714	+		GFF4180	0.89	+0.2
4,199,714	+		GFF4180	0.89	+0.1
4,199,714	+		GFF4180	0.89	+1.6
4,199,714	+		GFF4180	0.89	+0.3
4,199,722	-		GFF4180	0.90	-0.7
4,199,722	-		GFF4180	0.90	-0.9
4,199,722	-		GFF4180	0.90	-1.6
4,199,722	-		GFF4180	0.90	-0.5
4,199,722	-		GFF4180	0.90	-0.0
4,199,722	-		GFF4180	0.90	-0.1
4,199,722	-		GFF4180	0.90	-1.8
4,199,722	-		GFF4180	0.90	+0.3
4,199,729	-				+0.2
4,199,734	+				-1.3
4,199,742	-				+0.1
4,199,757	+				-1.1
4,199,786	+				-0.6
4,199,786	-				+0.8
4,199,786	-				-0.8
4,199,793	+				-0.6
4,199,793	+				+0.1
4,199,797	+				-1.1
4,199,801	-				-1.1
4,199,801	-				-0.5
4,199,801	-				-1.8
4,199,801	-				+1.7
4,199,801	-				-0.4
4,199,801	-				-1.2
4,199,801	-				+0.1
4,199,801	-				+0.3
4,199,801	-				-1.1
4,199,801	-				-0.3
4,199,803	+				+0.1
4,199,803	+				-2.0
4,199,806	-				+0.2
4,199,811	-				+0.3
4,199,811	-				+0.2
4,199,811	-				+0.2
4,199,811	-				+0.2
4,199,822	-				+0.4
4,199,826	-				-2.2
4,199,829	+				-0.1
4,199,831	-				+0.1
4,199,888	+				-0.7