Strain Fitness in Sphingobium sp. HT1-2 around GFF4154

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,179,273	+		GFF4153	0.71	-0.1
4,179,275	+		GFF4153	0.71	-2.5
4,179,283	-		GFF4153	0.71	-1.1
4,179,283	-		GFF4153	0.71	-0.4
4,179,283	-		GFF4153	0.71	-1.5
4,179,344	+		GFF4153	0.73	+0.4
4,179,344	+		GFF4153	0.73	+0.8
4,179,352	-		GFF4153	0.74	+0.4
4,179,352	-		GFF4153	0.74	-0.0
4,179,355	+		GFF4153	0.74	+0.2
4,179,373	-		GFF4153	0.75	-0.3
4,179,373	-		GFF4153	0.75	-1.0
4,179,388	-		GFF4153	0.75	-0.8
4,179,435	-		GFF4153	0.77	+0.4
4,179,472	+		GFF4153	0.78	-1.7
4,179,477	+		GFF4153	0.78	-0.4
4,179,478	-		GFF4153	0.78	-1.2
4,179,480	-		GFF4153	0.78	-0.1
4,179,482	+		GFF4153	0.78	+0.2
4,179,482	+		GFF4153	0.78	-0.8
4,179,482	+		GFF4153	0.78	-1.3
4,179,482	+		GFF4153	0.78	-1.0
4,179,490	-		GFF4153	0.79	-0.6
4,179,490	-		GFF4153	0.79	-0.4
4,179,511	-		GFF4153	0.79	+0.4
4,179,556	-		GFF4153	0.81	-0.6
4,179,570	-		GFF4153	0.82	-0.6
4,179,603	+		GFF4153	0.83	+0.7
4,179,606	-		GFF4153	0.83	-0.9
4,179,620	-		GFF4153	0.83	-0.1
4,179,627	+		GFF4153	0.84	-2.6
4,179,634	+		GFF4153	0.84	-1.9
4,179,658	+		GFF4153	0.85	-0.4
4,179,658	+		GFF4153	0.85	-0.2
4,179,658	+		GFF4153	0.85	-1.0
4,179,658	+		GFF4153	0.85	-0.8
4,179,658	+		GFF4153	0.85	-3.3
4,179,659	+		GFF4153	0.85	-0.4
4,179,666	-		GFF4153	0.85	-0.7
4,179,666	-		GFF4153	0.85	-0.3
4,179,695	-		GFF4153	0.86	-1.5
4,179,700	-		GFF4153	0.86	-3.3
4,179,700	-		GFF4153	0.86	-2.6
4,179,732	-		GFF4153	0.87	-0.4
4,179,740	-		GFF4153	0.88	-1.2
4,179,760	-		GFF4153	0.88	-0.2
4,179,760	-		GFF4153	0.88	+0.1
4,179,770	-		GFF4153	0.89	-0.2
4,179,770	-		GFF4153	0.89	+0.4
4,179,781	-		GFF4153	0.89	+0.3
4,179,799	+		GFF4153	0.90	-0.3
4,179,806	+				-1.0
4,179,806	+				-1.1
4,179,807	-				+0.4
4,179,874	+				+0.6
4,179,879	+				+1.0
4,179,879	+				-0.4
4,179,879	+				+0.8
4,179,879	+				-1.3
4,179,882	-				-0.0
4,179,887	-				-1.0
4,179,887	-				+0.1
4,179,959	+				+0.9
4,179,967	-				+0.0
4,179,979	+				-0.2
4,179,981	+				-0.2
4,179,989	-				-1.1
4,179,989	-				+0.2
4,180,005	+				-0.1
4,180,005	+				+0.4
4,180,005	+				+0.1
4,180,005	+				+0.2
4,180,025	+				+0.0
4,180,025	+				-0.8
4,180,030	+				-1.1
4,180,030	+				+0.6
4,180,030	-				-1.7
4,180,033	-				-0.2
4,180,038	-				-1.1
4,180,038	-				-1.5
4,180,038	-				+0.5
4,180,038	-				+0.5
4,180,051	-				-0.2
4,180,059	-				-1.9
4,180,064	+				-1.3
4,180,072	-				+0.2
4,180,081	+				+0.2
4,180,087	+				-1.8
4,180,098	+				-1.5
4,180,098	+				-0.3
4,180,098	+				-1.3
4,180,098	+				+0.4
4,180,098	+				-0.6
4,180,106	-				+0.0
4,180,106	-				+0.2
4,180,106	-				-0.9
4,180,106	-				-1.7
4,180,106	-				-2.8
4,180,154	+				-0.6
4,180,172	-				-0.8
4,180,267	-				-1.8
4,180,271	+				-1.8
4,180,279	-				-1.0
4,180,289	-				-0.5
4,180,328	-				+0.2
4,180,361	+		GFF4154	0.13	-1.5
4,180,365	+		GFF4154	0.14	+0.7
4,180,365	+		GFF4154	0.14	+0.3
4,180,365	+		GFF4154	0.14	+1.1
4,180,365	+		GFF4154	0.14	+0.9
4,180,365	+		GFF4154	0.14	+0.9
4,180,369	-		GFF4154	0.15	+0.6
4,180,373	+		GFF4154	0.15	-0.9
4,180,386	-		GFF4154	0.17	-1.1
4,180,405	-		GFF4154	0.20	+0.2
4,180,409	-		GFF4154	0.21	-1.6
4,180,443	+		GFF4154	0.26	-1.4
4,180,443	+		GFF4154	0.26	+0.7
4,180,443	+		GFF4154	0.26	-1.3
4,180,451	-		GFF4154	0.27	-0.7
4,180,451	-		GFF4154	0.27	-1.5
4,180,468	-		GFF4154	0.30	+0.2
4,180,473	-		GFF4154	0.30	-0.6
4,180,506	+		GFF4154	0.35	+0.2
4,180,528	-		GFF4154	0.39	+0.4
4,180,533	+		GFF4154	0.39	-1.1
4,180,533	+		GFF4154	0.39	+1.1
4,180,541	+		GFF4154	0.41	-0.4
4,180,547	+		GFF4154	0.42	-1.6
4,180,551	-		GFF4154	0.42	-0.0
4,180,552	+		GFF4154	0.42	-0.9
4,180,556	-		GFF4154	0.43	-0.2
4,180,556	-		GFF4154	0.43	-1.0
4,180,560	-		GFF4154	0.43	-1.0
4,180,567	+		GFF4154	0.45	-1.5
4,180,572	+		GFF4154	0.45	+1.2
4,180,574	+		GFF4154	0.46	-0.2
4,180,588	-		GFF4154	0.48	-0.7
4,180,616	-		GFF4154	0.52	-1.3
4,180,622	+		GFF4154	0.53	+1.1
4,180,630	-		GFF4154	0.54	+0.9
4,180,651	-		GFF4154	0.57	-0.5
4,180,676	-		GFF4154	0.61	-1.7
4,180,680	-		GFF4154	0.62	-1.9
4,180,757	+		GFF4154	0.73	+1.1
4,180,778	-		GFF4154	0.77	+0.8
4,180,780	+		GFF4154	0.77	-2.5
4,180,780	+		GFF4154	0.77	+0.6
4,180,780	+		GFF4154	0.77	+0.9
4,180,780	+		GFF4154	0.77	+0.5
4,180,786	-		GFF4154	0.78	-0.2
4,180,788	-		GFF4154	0.78	-0.8
4,180,790	+		GFF4154	0.78	-0.9
4,180,795	+		GFF4154	0.79	-0.5
4,180,798	-		GFF4154	0.80	-1.4
4,180,798	-		GFF4154	0.80	+0.1
4,180,803	-		GFF4154	0.80	+0.6
4,180,809	+		GFF4154	0.81	+1.1
4,180,817	-		GFF4154	0.82	-0.3
4,180,817	-		GFF4154	0.82	-0.3
4,180,817	-		GFF4154	0.82	+0.9
4,180,817	-		GFF4154	0.82	-0.6
4,180,817	-		GFF4154	0.82	-0.6
4,180,844	+		GFF4154	0.87	-0.3
4,180,844	+		GFF4154	0.87	-2.3
4,180,846	+		GFF4154	0.87	+0.7
4,180,852	-		GFF4154	0.88	+0.2
4,180,852	-		GFF4154	0.88	-0.2
4,180,868	+				-0.1
4,180,873	+				-0.1
4,180,873	+				+0.2
4,180,876	-				-0.4
4,180,876	-				+0.0
4,180,876	-				+0.2
4,180,876	-				+0.4
4,180,881	-				-0.3
4,180,881	-				-1.3
4,180,949	+				-1.2
4,180,957	-				-0.7
4,180,960	+				-0.3
4,180,960	+				+0.2
4,180,968	-				+0.5
4,180,968	-				-1.1
4,180,968	-				-0.8
4,180,978	-				-1.7
4,180,984	+				+0.4
4,180,984	+				-1.3
4,180,984	+				+0.4
4,180,984	+				+0.3
4,180,984	+				+0.8
4,180,984	+				-1.1
4,180,989	-				-1.2
4,180,991	-				-2.7
4,180,992	-				+1.8
4,180,994	+				-1.3
4,181,000	+				-2.1
4,181,008	+				-0.1
4,181,008	+				-1.4
4,181,013	+				-0.3
4,181,015	+				-2.2
4,181,015	+				-0.8
4,181,016	-				-0.8
4,181,021	-				+0.4
4,181,021	-				-0.2
4,181,021	-				-2.3
4,181,021	-				-1.5
4,181,023	-				+0.3
4,181,023	-				-0.1
4,181,039	-				+0.3
4,181,045	+				+0.6
4,181,056	+				-0.6
4,181,056	+				-1.3
4,181,056	+				-1.2
4,181,056	+				-0.5
4,181,056	+				-0.8
4,181,056	+				-1.3
4,181,056	+				-2.1
4,181,056	+				+0.3
4,181,064	-				-0.8
4,181,064	-				-1.1
4,181,064	-				-0.3
4,181,064	-				-0.9
4,181,064	-				+0.1
4,181,064	-				-1.9
4,181,085	-		GFF4155	0.11	+1.0
4,181,095	+		GFF4155	0.12	-0.9
4,181,100	-		GFF4155	0.12	-2.2
4,181,113	-		GFF4155	0.14	-1.3
4,181,154	-		GFF4155	0.19	-1.0
4,181,168	+		GFF4155	0.21	-0.6
4,181,187	+		GFF4155	0.23	+0.8
4,181,195	-		GFF4155	0.24	-1.4
4,181,195	-		GFF4155	0.24	-1.6
4,181,195	-		GFF4155	0.24	-0.3
4,181,195	-		GFF4155	0.24	-1.2
4,181,202	-		GFF4155	0.25	-0.6
4,181,249	+		GFF4155	0.31	-0.1
4,181,252	-		GFF4155	0.31	+0.3
4,181,255	+		GFF4155	0.31	-0.0
4,181,255	+		GFF4155	0.31	-1.6
4,181,258	-		GFF4155	0.32	-0.7
4,181,261	+		GFF4155	0.32	-1.2
4,181,261	+		GFF4155	0.32	-0.2
4,181,263	-		GFF4155	0.32	+0.1
4,181,273	+		GFF4155	0.33	-0.5
4,181,273	+		GFF4155	0.33	-2.3
4,181,275	+		GFF4155	0.34	+0.4
4,181,275	+		GFF4155	0.34	-0.3
4,181,281	+		GFF4155	0.34	+1.0
4,181,292	+		GFF4155	0.36	+0.0
4,181,310	+		GFF4155	0.38	+0.3
4,181,315	+		GFF4155	0.39	-0.2
4,181,318	-		GFF4155	0.39	-0.2
4,181,318	-		GFF4155	0.39	-1.0
4,181,318	-		GFF4155	0.39	-2.1
4,181,327	-		GFF4155	0.40	-0.3
4,181,333	-		GFF4155	0.41	-1.2
4,181,348	-		GFF4155	0.43	+0.3
4,181,349	+		GFF4155	0.43	+0.1
4,181,351	+		GFF4155	0.43	-2.1
4,181,352	-		GFF4155	0.43	-0.9
4,181,352	-		GFF4155	0.43	-0.7
4,181,352	-		GFF4155	0.43	-0.3
4,181,395	-		GFF4155	0.48	+0.4
4,181,400	-		GFF4155	0.49	-1.3
4,181,403	-		GFF4155	0.49	-0.6
4,181,512	-		GFF4155	0.63	-0.5
4,181,528	+		GFF4155	0.64	-0.2
4,181,528	+		GFF4155	0.64	-0.6
4,181,528	+		GFF4155	0.64	-1.7
4,181,528	+		GFF4155	0.64	-1.2
4,181,528	+		GFF4155	0.64	-1.5
4,181,528	+		GFF4155	0.64	-0.2
4,181,528	+		GFF4155	0.64	-0.6
4,181,528	+		GFF4155	0.64	+0.1
4,181,528	+		GFF4155	0.64	-0.2
4,181,528	+		GFF4155	0.64	-1.5
4,181,536	-		GFF4155	0.65	-0.3
4,181,536	-		GFF4155	0.65	-0.3
4,181,536	-		GFF4155	0.65	-0.5
4,181,536	-		GFF4155	0.65	+0.2
4,181,536	-		GFF4155	0.65	-0.4
4,181,565	+		GFF4155	0.69	+0.5
4,181,570	+		GFF4155	0.70	+0.9
4,181,570	+		GFF4155	0.70	-1.3
4,181,570	+		GFF4155	0.70	-0.0
4,181,570	+		GFF4155	0.70	-0.2
4,181,578	-		GFF4155	0.71	-1.2
4,181,578	-		GFF4155	0.71	-0.2
4,181,578	-		GFF4155	0.71	+0.9
4,181,578	-		GFF4155	0.71	-0.2
4,181,578	-		GFF4155	0.71	-0.8
4,181,584	+		GFF4155	0.71	+1.0
4,181,584	+		GFF4155	0.71	-0.8
4,181,584	+		GFF4155	0.71	-0.9
4,181,584	+		GFF4155	0.71	-1.1
4,181,584	+		GFF4155	0.71	-0.1
4,181,584	+		GFF4155	0.71	-1.3
4,181,584	+		GFF4155	0.71	-1.0
4,181,592	-		GFF4155	0.72	-0.6
4,181,592	-		GFF4155	0.72	-0.4
4,181,592	-		GFF4155	0.72	-0.9
4,181,592	-		GFF4155	0.72	-0.7
4,181,595	+		GFF4155	0.73	+0.1
4,181,595	+		GFF4155	0.73	-0.5
4,181,599	+		GFF4155	0.73	+0.4
4,181,603	-		GFF4155	0.74	-1.0
4,181,603	-		GFF4155	0.74	+0.9
4,181,611	-		GFF4155	0.75	+1.0
4,181,611	-		GFF4155	0.75	-2.1
4,181,624	-		GFF4155	0.76	-0.1
4,181,624	-		GFF4155	0.76	-0.3
4,181,626	+		GFF4155	0.76	-0.1
4,181,626	+		GFF4155	0.76	-2.1
4,181,634	-		GFF4155	0.77	+0.2
4,181,634	-		GFF4155	0.77	-0.6
4,181,634	-		GFF4155	0.77	-0.8
4,181,634	-		GFF4155	0.77	-1.6
4,181,646	+		GFF4155	0.79	-0.8
4,181,654	-		GFF4155	0.80	+1.2
4,181,671	+		GFF4155	0.82	+0.1
4,181,671	+		GFF4155	0.82	-0.2
4,181,672	-		GFF4155	0.82	-2.6
4,181,676	-		GFF4155	0.82	+0.2
4,181,701	+		GFF4155	0.86	-1.3
4,181,701	+		GFF4155	0.86	-0.2
4,181,707	+		GFF4155	0.86	-1.1
4,181,707	+		GFF4155	0.86	-0.9
4,181,707	+		GFF4155	0.86	-0.6
4,181,707	+		GFF4155	0.86	-0.5
4,181,707	+		GFF4155	0.86	-2.8
4,181,707	+		GFF4155	0.86	-0.6
4,181,709	-		GFF4155	0.86	-2.4
4,181,715	-		GFF4155	0.87	+0.7
4,181,715	-		GFF4155	0.87	+0.9
4,181,715	-		GFF4155	0.87	-0.7
4,181,715	-		GFF4155	0.87	-0.6
4,181,740	+				-1.8
4,181,740	+				-0.1
4,181,745	+				-0.1
4,181,745	+				+0.1
4,181,745	+				+1.6
4,181,745	+				-2.1
4,181,745	+				-3.3
4,181,745	+				+0.1
4,181,745	+				-1.0
4,181,745	+				-1.8
4,181,745	+				+0.2
4,181,748	-				-0.4
4,181,748	-				-0.2
4,181,753	-				+0.8
4,181,753	-				+0.7
4,181,753	-				+0.5
4,181,753	-				-2.2
4,181,764	+				+0.2
4,181,769	+				+0.8
4,181,772	-				-2.0
4,181,803	+				+0.7
4,181,811	-				+0.9
4,181,813	+				-1.6
4,181,818	+				+0.9
4,181,821	-				-0.4
4,181,830	+				+0.1
4,181,854	+		GFF4156	0.15	-0.6
4,181,862	+		GFF4156	0.18	-0.7
4,181,862	+		GFF4156	0.18	+1.1
4,181,862	+		GFF4156	0.18	-0.4
4,181,862	-		GFF4156	0.18	+1.3
4,181,891	-		GFF4156	0.29	-1.3
4,181,901	+		GFF4156	0.33	+0.0
4,181,903	+		GFF4156	0.33	+0.1
4,181,913	+		GFF4156	0.37	-1.5
4,181,923	+		GFF4156	0.41	-2.5