Strain Fitness in Sphingobium sp. HT1-2 around GFF4128

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,150,815	-		GFF4126	0.66	+0.5
4,150,836	+		GFF4126	0.68	+0.7
4,150,872	-		GFF4126	0.72	+0.1
4,150,882	-		GFF4126	0.73	+0.4
4,150,900	+		GFF4126	0.75	+0.8
4,150,908	-		GFF4126	0.76	-0.7
4,150,908	-		GFF4126	0.76	+0.9
4,150,918	-		GFF4126	0.77	+0.3
4,150,918	-		GFF4126	0.77	+0.1
4,150,939	+		GFF4126	0.79	-0.5
4,150,939	+		GFF4126	0.79	-0.6
4,150,947	-		GFF4126	0.80	-1.6
4,150,947	-		GFF4126	0.80	+1.6
4,150,948	+		GFF4126	0.80	-0.9
4,150,952	+		GFF4126	0.80	-1.6
4,150,952	+		GFF4126	0.80	-1.6
4,150,960	-		GFF4126	0.81	+0.7
4,151,105	-				-0.3
4,151,212	+				-1.7
4,151,220	-		GFF4127	0.10	-2.0
4,151,262	-		GFF4127	0.17	+1.3
4,151,279	+		GFF4127	0.20	+0.6
4,151,287	-		GFF4127	0.21	-2.8
4,151,287	-		GFF4127	0.21	+0.8
4,151,299	-		GFF4127	0.23	-0.9
4,151,304	-		GFF4127	0.24	+0.8
4,151,342	+		GFF4127	0.30	-0.6
4,151,353	+		GFF4127	0.32	+1.3
4,151,373	-		GFF4127	0.35	+0.5
4,151,378	-		GFF4127	0.36	-0.0
4,151,458	+		GFF4127	0.49	+1.1
4,151,458	+		GFF4127	0.49	+0.2
4,151,481	-		GFF4127	0.53	+1.2
4,151,486	-		GFF4127	0.54	+1.4
4,151,546	-		GFF4127	0.64	-1.1
4,151,611	-		GFF4127	0.74	-0.2
4,151,611	-		GFF4127	0.74	+1.1
4,151,613	-		GFF4127	0.75	-1.1
4,151,709	-				+0.3
4,151,769	-				+0.2
4,151,807	+				-2.0
4,151,815	+				+0.3
4,151,847	+				-0.6
4,151,847	+				-0.5
4,151,847	+				+1.1
4,151,847	+				+0.1
4,151,847	+				+0.1
4,151,847	+				+0.3
4,151,865	-				+1.5
4,151,865	-				+0.6
4,151,884	-				-0.1
4,151,917	-				-0.7
4,151,973	+				+0.6
4,151,975	-				-0.4
4,152,009	+				+1.4
4,152,081	-		GFF4128	0.10	-0.9
4,152,087	+		GFF4128	0.11	-0.3
4,152,105	+		GFF4128	0.11	+0.1
4,152,110	+		GFF4128	0.12	+0.6
4,152,113	-		GFF4128	0.12	-1.3
4,152,113	-		GFF4128	0.12	+1.0
4,152,169	-		GFF4128	0.14	-0.3
4,152,177	+		GFF4128	0.14	+0.9
4,152,188	+		GFF4128	0.15	+0.8
4,152,264	+		GFF4128	0.17	-0.8
4,152,291	+		GFF4128	0.18	+0.4
4,152,415	+		GFF4128	0.23	+1.0
4,152,448	-		GFF4128	0.25	+1.3
4,152,485	+		GFF4128	0.26	+1.0
4,152,485	+		GFF4128	0.26	-0.2
4,152,485	+		GFF4128	0.26	+1.1
4,152,493	+		GFF4128	0.26	+0.3
4,152,493	-		GFF4128	0.26	+1.5
4,152,530	-		GFF4128	0.28	-1.6
4,152,555	+		GFF4128	0.29	-0.9
4,152,607	+		GFF4128	0.31	-1.5
4,152,618	+		GFF4128	0.31	-0.0
4,152,618	+		GFF4128	0.31	-0.9
4,152,620	+		GFF4128	0.31	+1.4
4,152,620	+		GFF4128	0.31	-1.7
4,152,626	-		GFF4128	0.31	-0.5
4,152,626	-		GFF4128	0.31	-0.3
4,152,626	-		GFF4128	0.31	-0.2
4,152,667	+		GFF4128	0.33	-1.1
4,152,677	+		GFF4128	0.33	+0.3
4,152,703	-		GFF4128	0.34	-1.7
4,152,709	+		GFF4128	0.35	-1.7
4,152,709	+		GFF4128	0.35	+0.6
4,152,709	+		GFF4128	0.35	-0.4
4,152,727	-		GFF4128	0.35	+2.3
4,152,731	+		GFF4128	0.35	-1.0
4,152,766	+		GFF4128	0.37	-0.4
4,152,766	+		GFF4128	0.37	-0.1
4,152,774	-		GFF4128	0.37	-0.9
4,152,870	-		GFF4128	0.41	+0.2
4,152,891	-		GFF4128	0.42	+0.1
4,152,912	+		GFF4128	0.42	+1.2
4,152,920	-		GFF4128	0.43	-2.5
4,152,922	-		GFF4128	0.43	+0.9
4,152,964	+		GFF4128	0.44	+0.2
4,152,983	+		GFF4128	0.45	-0.6
4,153,000	+		GFF4128	0.46	+2.0
4,153,000	+		GFF4128	0.46	+1.7
4,153,016	+		GFF4128	0.46	-0.7
4,153,016	+		GFF4128	0.46	+0.1
4,153,021	+		GFF4128	0.47	+0.1
4,153,021	+		GFF4128	0.47	+0.5
4,153,021	+		GFF4128	0.47	+2.0
4,153,021	+		GFF4128	0.47	+1.4
4,153,024	+		GFF4128	0.47	-0.1
4,153,028	+		GFF4128	0.47	-0.8
4,153,028	+		GFF4128	0.47	+1.4
4,153,028	+		GFF4128	0.47	-0.5
4,153,028	+		GFF4128	0.47	+0.6
4,153,028	+		GFF4128	0.47	+0.6
4,153,029	-		GFF4128	0.47	+0.2
4,153,029	-		GFF4128	0.47	+1.0
4,153,034	-		GFF4128	0.47	+2.4
4,153,043	+		GFF4128	0.47	+0.7
4,153,043	+		GFF4128	0.47	+0.9
4,153,043	+		GFF4128	0.47	+0.9
4,153,043	+		GFF4128	0.47	+0.2
4,153,043	+		GFF4128	0.47	-0.7
4,153,043	+		GFF4128	0.47	-1.3
4,153,043	+		GFF4128	0.47	+0.2
4,153,043	+		GFF4128	0.47	+1.4
4,153,043	+		GFF4128	0.47	+0.1
4,153,043	+		GFF4128	0.47	+1.3
4,153,043	+		GFF4128	0.47	-1.2
4,153,043	+		GFF4128	0.47	+0.5
4,153,043	+		GFF4128	0.47	-0.5
4,153,045	+		GFF4128	0.47	+1.9
4,153,045	+		GFF4128	0.47	+0.0
4,153,045	+		GFF4128	0.47	+0.6
4,153,051	-		GFF4128	0.48	+0.5
4,153,051	-		GFF4128	0.48	+0.0
4,153,051	-		GFF4128	0.48	+1.1
4,153,051	-		GFF4128	0.48	-1.1
4,153,051	-		GFF4128	0.48	+1.0
4,153,051	-		GFF4128	0.48	+1.1
4,153,051	-		GFF4128	0.48	-0.4
4,153,051	-		GFF4128	0.48	-1.2
4,153,053	+		GFF4128	0.48	+0.4
4,153,053	+		GFF4128	0.48	+0.6
4,153,053	-		GFF4128	0.48	+0.4
4,153,057	-		GFF4128	0.48	-0.4
4,153,061	-		GFF4128	0.48	-1.6
4,153,061	-		GFF4128	0.48	+0.9
4,153,061	-		GFF4128	0.48	+0.7
4,153,063	+		GFF4128	0.48	-0.2
4,153,063	+		GFF4128	0.48	-0.6
4,153,071	-		GFF4128	0.48	+0.0
4,153,071	-		GFF4128	0.48	-1.7
4,153,071	-		GFF4128	0.48	+1.4
4,153,071	-		GFF4128	0.48	-0.1
4,153,071	-		GFF4128	0.48	+1.0
4,153,084	+		GFF4128	0.49	-0.6
4,153,084	+		GFF4128	0.49	+0.0
4,153,084	+		GFF4128	0.49	+0.4
4,153,084	+		GFF4128	0.49	-0.5
4,153,087	-		GFF4128	0.49	+0.1
4,153,090	+		GFF4128	0.49	-0.4
4,153,090	+		GFF4128	0.49	+0.1
4,153,092	-		GFF4128	0.49	-1.5
4,153,101	+		GFF4128	0.50	+0.2
4,153,108	+		GFF4128	0.50	-0.5
4,153,114	-		GFF4128	0.50	+0.3
4,153,149	+		GFF4128	0.51	-0.1
4,153,149	-		GFF4128	0.51	+0.6
4,153,172	-		GFF4128	0.52	-0.1
4,153,192	+		GFF4128	0.53	-0.1
4,153,195	-		GFF4128	0.53	-0.3
4,153,257	+		GFF4128	0.56	+1.0
4,153,257	+		GFF4128	0.56	+1.9
4,153,265	-		GFF4128	0.56	+0.8
4,153,265	-		GFF4128	0.56	+0.4
4,153,328	+		GFF4128	0.58	-0.3
4,153,328	+		GFF4128	0.58	+0.4
4,153,328	+		GFF4128	0.58	+0.3
4,153,328	+		GFF4128	0.58	-0.9
4,153,328	+		GFF4128	0.58	+1.0
4,153,356	+		GFF4128	0.59	-1.4
4,153,364	-		GFF4128	0.60	-1.0
4,153,417	+		GFF4128	0.62	-0.4
4,153,448	-		GFF4128	0.63	-0.1
4,153,460	+		GFF4128	0.63	-2.2
4,153,468	-		GFF4128	0.64	+0.8
4,153,517	-		GFF4128	0.66	-0.3
4,153,661	+		GFF4128	0.71	+1.4
4,153,677	+		GFF4128	0.72	-3.2
4,153,677	+		GFF4128	0.72	+0.1
4,153,689	+		GFF4128	0.72	+0.3
4,153,691	+		GFF4128	0.72	-0.3
4,153,691	-		GFF4128	0.72	-0.0
4,153,699	-		GFF4128	0.73	-1.3
4,153,708	-		GFF4128	0.73	+1.1
4,153,719	+		GFF4128	0.73	+1.6
4,153,732	-		GFF4128	0.74	+0.1
4,153,744	+		GFF4128	0.74	-0.9
4,153,746	+		GFF4128	0.74	+0.1
4,153,752	-		GFF4128	0.75	+0.3
4,153,754	-		GFF4128	0.75	+0.9
4,153,754	-		GFF4128	0.75	-0.5
4,153,797	-		GFF4128	0.76	-0.8
4,153,812	+		GFF4128	0.77	-0.2
4,153,812	+		GFF4128	0.77	-1.0
4,153,843	-		GFF4128	0.78	-1.1
4,153,847	-		GFF4128	0.78	-1.1
4,153,859	-		GFF4128	0.79	+0.4
4,153,896	+		GFF4128	0.80	-0.2
4,153,924	+		GFF4128	0.81	+0.5
4,153,932	-		GFF4128	0.81	+0.6
4,153,932	-		GFF4128	0.81	+0.2
4,153,934	-		GFF4128	0.82	+0.3
4,153,962	-		GFF4128	0.83	+0.0
4,153,962	-		GFF4128	0.83	+0.2
4,154,017	+		GFF4128	0.85	-1.7
4,154,034	+		GFF4128	0.85	-0.7
4,154,034	+		GFF4128	0.85	-0.7
4,154,034	+		GFF4128	0.85	-0.5
4,154,034	+		GFF4128	0.85	+2.4
4,154,034	+		GFF4128	0.85	+0.3
4,154,034	+		GFF4128	0.85	+1.2
4,154,034	+		GFF4128	0.85	+0.6
4,154,034	+		GFF4128	0.85	-1.3
4,154,042	-		GFF4128	0.86	+1.3
4,154,042	-		GFF4128	0.86	+0.1
4,154,042	-		GFF4128	0.86	-0.6
4,154,042	-		GFF4128	0.86	+0.7
4,154,042	-		GFF4128	0.86	+0.4
4,154,042	-		GFF4128	0.86	-0.8
4,154,042	-		GFF4128	0.86	+0.6
4,154,044	+		GFF4128	0.86	-0.2
4,154,052	-		GFF4128	0.86	-0.8
4,154,107	+		GFF4128	0.88	+1.7
4,154,107	+		GFF4128	0.88	-0.1
4,154,107	+		GFF4128	0.88	+0.4
4,154,115	-		GFF4128	0.89	+0.4
4,154,115	-		GFF4128	0.89	-1.4
4,154,115	-		GFF4128	0.89	+1.6
4,154,151	+		GFF4128	0.90	+1.2
4,154,162	+				+0.2
4,154,176	+				+1.7
4,154,182	+				+1.4
4,154,190	-				+0.1
4,154,204	-				+0.6
4,154,221	-				+1.4
4,154,240	-				+0.7
4,154,266	+				+1.6
4,154,268	+				+2.4
4,154,270	+				-0.1
4,154,275	+				-0.4
4,154,275	+				+0.6
4,154,336	-				-1.1
4,154,350	+				+0.3
4,154,426	+				-0.4
4,154,445	-				-0.8
4,154,457	-				+1.3
4,154,459	-				-1.8
4,154,469	+				+1.7
4,154,669	+		GFF4129	0.19	+0.4
4,154,677	-		GFF4129	0.19	-0.6
4,154,811	+		GFF4129	0.34	+0.1
4,154,819	-		GFF4129	0.35	-0.4
4,154,843	-		GFF4129	0.37	-0.7
4,154,892	-		GFF4129	0.43	+0.1
4,154,930	-		GFF4129	0.47	+0.1
4,154,930	-		GFF4129	0.47	+1.0