Strain Fitness in Sphingobium sp. HT1-2 around GFF4110

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,130,088	-		GFF4108	0.84	-1.6
4,130,099	+		GFF4108	0.85	+1.6
4,130,103	+		GFF4108	0.85	-2.3
4,130,103	+		GFF4108	0.85	-2.1
4,130,111	-		GFF4108	0.86	-0.0
4,130,111	-		GFF4108	0.86	+0.9
4,130,111	-		GFF4108	0.86	+0.3
4,130,141	+		GFF4108	0.88	-1.6
4,130,141	-		GFF4108	0.88	-2.0
4,130,148	+		GFF4108	0.88	+0.3
4,130,153	+		GFF4108	0.89	-2.3
4,130,177	+				-1.0
4,130,177	+				-0.8
4,130,185	-				+0.1
4,130,208	+				-0.4
4,130,243	+				-1.1
4,130,243	+				-1.1
4,130,248	+				-1.4
4,130,248	+				-1.3
4,130,248	+				-1.3
4,130,248	+				+0.3
4,130,248	+				+1.3
4,130,248	+				-0.3
4,130,248	+				-1.8
4,130,248	+				-0.9
4,130,248	+				-1.6
4,130,248	+				-0.1
4,130,248	+				-0.2
4,130,248	+				-1.1
4,130,248	+				+1.5
4,130,251	-				+0.3
4,130,251	-				+0.4
4,130,251	-				+0.4
4,130,251	-				-0.3
4,130,253	+				-0.2
4,130,253	+				-1.2
4,130,253	+				+0.7
4,130,253	+				-1.6
4,130,253	+				-3.3
4,130,253	+				-1.3
4,130,256	-				+0.2
4,130,256	-				-0.9
4,130,256	-				+0.5
4,130,256	-				-1.8
4,130,256	-				-0.4
4,130,256	-				-0.3
4,130,256	-				+0.7
4,130,256	-				+1.3
4,130,256	-				-0.7
4,130,256	-				-1.1
4,130,256	-				+0.9
4,130,261	-				+0.3
4,130,261	-				+0.3
4,130,261	-				-0.6
4,130,261	-				-1.1
4,130,261	-				-0.3
4,130,261	-				-0.4
4,130,296	+				+0.7
4,130,303	+				-0.9
4,130,308	+				-2.2
4,130,308	+				+0.3
4,130,308	+				-1.9
4,130,316	-				-0.3
4,130,316	-				+0.9
4,130,316	-				-1.0
4,130,326	+				-0.7
4,130,356	-				-0.3
4,130,390	+				-0.1
4,130,395	+				-1.8
4,130,403	+				+0.6
4,130,403	-				-1.8
4,130,403	-				+0.4
4,130,406	+				-0.8
4,130,436	+				-0.3
4,130,436	+				-0.2
4,130,438	+				+0.1
4,130,442	-				+0.7
4,130,444	+				-0.5
4,130,444	-				-1.5
4,130,444	-				-0.3
4,130,451	+				+2.2
4,130,451	+				-0.6
4,130,452	+				+1.1
4,130,454	-				-2.5
4,130,471	+		GFF4109	0.11	-1.6
4,130,507	+		GFF4109	0.17	-0.7
4,130,511	-		GFF4109	0.17	-0.0
4,130,549	+		GFF4109	0.23	+0.1
4,130,581	+		GFF4109	0.29	+0.8
4,130,581	+		GFF4109	0.29	+0.6
4,130,589	-		GFF4109	0.30	+0.5
4,130,595	+		GFF4109	0.31	-1.6
4,130,595	+		GFF4109	0.31	-1.0
4,130,595	-		GFF4109	0.31	-0.4
4,130,595	-		GFF4109	0.31	-0.6
4,130,603	-		GFF4109	0.32	-2.7
4,130,632	+		GFF4109	0.37	-0.3
4,130,632	+		GFF4109	0.37	-0.2
4,130,634	+		GFF4109	0.37	+0.7
4,130,634	+		GFF4109	0.37	-0.9
4,130,636	+		GFF4109	0.38	+0.1
4,130,639	+		GFF4109	0.38	+0.2
4,130,640	-		GFF4109	0.38	+1.8
4,130,640	-		GFF4109	0.38	-0.2
4,130,640	-		GFF4109	0.38	-0.6
4,130,640	-		GFF4109	0.38	-2.0
4,130,642	-		GFF4109	0.39	-0.6
4,130,642	-		GFF4109	0.39	+0.1
4,130,647	-		GFF4109	0.40	-0.6
4,130,647	-		GFF4109	0.40	-1.3
4,130,647	-		GFF4109	0.40	-0.5
4,130,647	-		GFF4109	0.40	+0.3
4,130,662	+		GFF4109	0.42	-0.2
4,130,664	+		GFF4109	0.42	+0.4
4,130,670	-		GFF4109	0.43	-1.6
4,130,672	-		GFF4109	0.44	-1.4
4,130,699	+		GFF4109	0.48	-1.1
4,130,699	+		GFF4109	0.48	-1.4
4,130,699	+		GFF4109	0.48	-0.4
4,130,699	+		GFF4109	0.48	-0.4
4,130,699	+		GFF4109	0.48	-1.6
4,130,700	-		GFF4109	0.48	+1.5
4,130,707	-		GFF4109	0.50	-0.9
4,130,707	-		GFF4109	0.50	-0.1
4,130,714	+		GFF4109	0.51	+1.0
4,130,716	+		GFF4109	0.51	-1.4
4,130,722	-		GFF4109	0.52	-1.2
4,130,722	-		GFF4109	0.52	+1.3
4,130,726	+		GFF4109	0.53	+0.7
4,130,732	+		GFF4109	0.54	+0.0
4,130,737	+		GFF4109	0.54	-0.1
4,130,777	+		GFF4109	0.61	-1.7
4,130,777	+		GFF4109	0.61	-1.0
4,130,777	+		GFF4109	0.61	-1.3
4,130,785	-		GFF4109	0.62	+0.7
4,130,785	-		GFF4109	0.62	-1.6
4,130,801	+		GFF4109	0.65	-0.6
4,130,812	+		GFF4109	0.67	+0.0
4,130,825	-		GFF4109	0.69	-1.3
4,130,867	+		GFF4109	0.76	+0.8
4,130,874	+		GFF4109	0.77	+0.5
4,130,882	-		GFF4109	0.78	-0.3
4,130,885	+		GFF4109	0.79	-1.1
4,130,885	+		GFF4109	0.79	-1.3
4,130,895	+		GFF4109	0.81	-0.2
4,130,954	+				-0.5
4,130,954	+				+1.0
4,130,959	+				+0.5
4,130,959	+				-0.6
4,130,959	+				-1.5
4,130,959	+				-1.8
4,130,967	-				-0.5
4,130,967	-				+0.3
4,131,032	+				-0.2
4,131,096	+				+1.2
4,131,096	+				+0.3
4,131,096	+				-1.1
4,131,096	+				-1.2
4,131,096	+				-0.2
4,131,096	+				-1.4
4,131,096	+				-0.9
4,131,096	+				-0.6
4,131,096	+				-1.1
4,131,099	-				-0.1
4,131,104	-				+0.4
4,131,104	-				-0.4
4,131,104	-				-1.2
4,131,104	-				-0.6
4,131,104	-				+0.6
4,131,104	-				-0.9
4,131,104	-				-0.8
4,131,104	-				-1.4
4,131,104	-				-2.3
4,131,104	-				-1.2
4,131,104	-				-0.4
4,131,104	-				-2.2
4,131,108	-				+0.5
4,131,110	+				-0.1
4,131,113	-				+1.5
4,131,151	+				+0.4
4,131,155	-				-1.1
4,131,157	+				+0.4
4,131,157	-				+1.0
4,131,157	-				-0.2
4,131,175	-				-0.6
4,131,182	-		GFF4110	0.10	+1.0
4,131,183	+		GFF4110	0.10	-1.2
4,131,183	+		GFF4110	0.10	-2.2
4,131,188	+		GFF4110	0.11	-0.1
4,131,189	+		GFF4110	0.11	-2.3
4,131,191	-		GFF4110	0.11	-2.1
4,131,194	+		GFF4110	0.11	+0.6
4,131,194	+		GFF4110	0.11	-1.2
4,131,194	+		GFF4110	0.11	-1.8
4,131,196	-		GFF4110	0.11	-0.1
4,131,196	-		GFF4110	0.11	+0.7
4,131,196	-		GFF4110	0.11	+0.6
4,131,199	+		GFF4110	0.12	+0.0
4,131,202	-		GFF4110	0.12	+1.1
4,131,202	-		GFF4110	0.12	+0.1
4,131,202	-		GFF4110	0.12	-0.6
4,131,207	-		GFF4110	0.12	+1.0
4,131,207	-		GFF4110	0.12	-1.9
4,131,248	+		GFF4110	0.16	-0.2
4,131,248	+		GFF4110	0.16	-0.7
4,131,255	+		GFF4110	0.16	-0.9
4,131,255	+		GFF4110	0.16	-0.4
4,131,255	+		GFF4110	0.16	-0.8
4,131,255	+		GFF4110	0.16	-0.0
4,131,255	+		GFF4110	0.16	-0.5
4,131,255	+		GFF4110	0.16	+0.3
4,131,255	+		GFF4110	0.16	-1.4
4,131,255	+		GFF4110	0.16	-1.9
4,131,255	+		GFF4110	0.16	+0.1
4,131,255	+		GFF4110	0.16	-0.6
4,131,255	+		GFF4110	0.16	-0.2
4,131,255	+		GFF4110	0.16	-0.6
4,131,255	+		GFF4110	0.16	-0.4
4,131,255	+		GFF4110	0.16	+0.3
4,131,255	+		GFF4110	0.16	+0.0
4,131,255	+		GFF4110	0.16	+1.3
4,131,255	+		GFF4110	0.16	-0.9
4,131,255	+		GFF4110	0.16	-1.3
4,131,255	+		GFF4110	0.16	-1.6
4,131,255	+		GFF4110	0.16	-2.3
4,131,255	+		GFF4110	0.16	-0.7
4,131,256	-		GFF4110	0.16	-1.3
4,131,263	-		GFF4110	0.17	-2.7
4,131,263	-		GFF4110	0.17	-0.2
4,131,263	-		GFF4110	0.17	-0.2
4,131,263	-		GFF4110	0.17	-2.5
4,131,263	-		GFF4110	0.17	+0.3
4,131,263	-		GFF4110	0.17	+0.8
4,131,263	-		GFF4110	0.17	+1.4
4,131,263	-		GFF4110	0.17	-0.3
4,131,263	-		GFF4110	0.17	-0.9
4,131,263	-		GFF4110	0.17	-0.5
4,131,263	-		GFF4110	0.17	-0.6
4,131,263	-		GFF4110	0.17	-1.1
4,131,263	-		GFF4110	0.17	-1.4
4,131,263	-		GFF4110	0.17	-2.2
4,131,263	-		GFF4110	0.17	+0.1
4,131,263	-		GFF4110	0.17	+1.0
4,131,263	-		GFF4110	0.17	-1.1
4,131,263	-		GFF4110	0.17	+0.1
4,131,263	-		GFF4110	0.17	-0.1
4,131,263	-		GFF4110	0.17	-0.8
4,131,278	+		GFF4110	0.18	-0.4
4,131,295	+		GFF4110	0.20	-0.3
4,131,324	+		GFF4110	0.22	-1.6
4,131,344	+		GFF4110	0.24	-0.7
4,131,344	+		GFF4110	0.24	-0.1
4,131,349	+		GFF4110	0.24	-1.9
4,131,349	+		GFF4110	0.24	-0.0
4,131,349	+		GFF4110	0.24	+0.4
4,131,349	+		GFF4110	0.24	-0.6
4,131,349	+		GFF4110	0.24	-0.6
4,131,349	+		GFF4110	0.24	+1.1
4,131,357	-		GFF4110	0.25	+0.1
4,131,357	-		GFF4110	0.25	-1.6
4,131,389	+		GFF4110	0.27	+0.0
4,131,390	-		GFF4110	0.28	+1.4
4,131,408	+		GFF4110	0.29	+0.7
4,131,408	+		GFF4110	0.29	-0.3
4,131,408	+		GFF4110	0.29	-0.9
4,131,408	+		GFF4110	0.29	-1.5
4,131,414	-		GFF4110	0.30	-0.5
4,131,416	-		GFF4110	0.30	-1.0
4,131,416	-		GFF4110	0.30	+0.6
4,131,423	+		GFF4110	0.30	-1.2
4,131,423	+		GFF4110	0.30	-1.3
4,131,423	+		GFF4110	0.30	-0.4
4,131,431	-		GFF4110	0.31	-1.2
4,131,436	-		GFF4110	0.31	-1.7
4,131,452	+		GFF4110	0.33	+0.3
4,131,459	+		GFF4110	0.33	-1.0
4,131,467	-		GFF4110	0.34	+0.8
4,131,473	-		GFF4110	0.35	-1.4
4,131,504	-		GFF4110	0.37	-0.7
4,131,572	+		GFF4110	0.43	+0.8
4,131,585	-		GFF4110	0.44	-1.0
4,131,585	-		GFF4110	0.44	-0.6
4,131,598	+		GFF4110	0.45	+0.1
4,131,598	+		GFF4110	0.45	+0.2
4,131,598	+		GFF4110	0.45	-0.2
4,131,639	-		GFF4110	0.48	+1.3
4,131,644	+		GFF4110	0.49	+0.8
4,131,644	+		GFF4110	0.49	-1.0
4,131,644	+		GFF4110	0.49	-1.6
4,131,644	+		GFF4110	0.49	-0.9
4,131,649	+		GFF4110	0.49	+0.5
4,131,652	+		GFF4110	0.50	+0.4
4,131,672	-		GFF4110	0.51	-0.6
4,131,681	+		GFF4110	0.52	-0.4
4,131,681	+		GFF4110	0.52	-1.1
4,131,689	-		GFF4110	0.53	+0.1
4,131,689	-		GFF4110	0.53	+0.4
4,131,716	-		GFF4110	0.55	-1.2
4,131,721	-		GFF4110	0.55	-1.2
4,131,733	-		GFF4110	0.56	-2.3
4,131,746	-		GFF4110	0.57	-0.5
4,131,749	+		GFF4110	0.58	-0.4
4,131,783	+		GFF4110	0.61	-0.8
4,131,793	-		GFF4110	0.61	-0.3
4,131,801	-		GFF4110	0.62	+0.6
4,131,807	+		GFF4110	0.63	-0.9
4,131,870	+		GFF4110	0.68	-1.2
4,131,875	+		GFF4110	0.68	-0.6
4,131,875	+		GFF4110	0.68	+0.5
4,131,875	+		GFF4110	0.68	+0.5
4,131,878	-		GFF4110	0.69	-0.6
4,131,878	-		GFF4110	0.69	-0.9
4,131,883	-		GFF4110	0.69	-1.2
4,131,883	-		GFF4110	0.69	-2.9
4,131,898	+		GFF4110	0.70	+1.1
4,131,898	+		GFF4110	0.70	+0.7
4,131,898	+		GFF4110	0.70	+0.0
4,131,906	-		GFF4110	0.71	-0.6
4,131,906	-		GFF4110	0.71	-1.7
4,131,906	-		GFF4110	0.71	-0.7
4,131,906	-		GFF4110	0.71	-0.8
4,131,906	-		GFF4110	0.71	+0.6
4,131,916	-		GFF4110	0.72	-0.1
4,131,919	-		GFF4110	0.72	-0.2
4,131,937	-		GFF4110	0.73	+0.6
4,131,952	-		GFF4110	0.75	-2.4
4,131,952	-		GFF4110	0.75	-1.3
4,131,952	-		GFF4110	0.75	-0.6
4,131,952	-		GFF4110	0.75	+0.7
4,131,952	-		GFF4110	0.75	-1.8
4,131,954	+		GFF4110	0.75	-0.2
4,131,954	+		GFF4110	0.75	+0.7
4,131,954	+		GFF4110	0.75	-2.6
4,131,966	+		GFF4110	0.76	-1.4
4,131,981	-		GFF4110	0.77	-0.6
4,131,991	+		GFF4110	0.78	-1.2
4,131,991	+		GFF4110	0.78	+1.1
4,131,991	+		GFF4110	0.78	+1.9
4,131,992	+		GFF4110	0.78	-0.2
4,131,999	-		GFF4110	0.79	+1.0
4,131,999	-		GFF4110	0.79	-2.3
4,132,012	+		GFF4110	0.80	+1.7
4,132,030	+		GFF4110	0.81	+0.4
4,132,030	+		GFF4110	0.81	-0.3
4,132,038	-		GFF4110	0.82	+0.9
4,132,038	-		GFF4110	0.82	+1.2
4,132,038	-		GFF4110	0.82	+1.1
4,132,038	-		GFF4110	0.82	-1.4
4,132,053	-		GFF4110	0.83	-1.5
4,132,053	-		GFF4110	0.83	-0.1
4,132,107	+		GFF4110	0.88	-0.6
4,132,117	-		GFF4110	0.89	+0.3
4,132,134	+				-0.6
4,132,134	+				-1.4
4,132,134	+				+0.2
4,132,134	+				-0.2
4,132,134	+				+0.9
4,132,134	+				+0.2
4,132,134	+				+0.3
4,132,136	-				-2.1
4,132,139	+				+0.0
4,132,142	-				+0.4
4,132,142	-				-1.2
4,132,142	-				-1.7
4,132,142	-				+0.4
4,132,142	-				-1.7
4,132,144	+				+0.6
4,132,144	+				-0.8
4,132,147	-				+0.2
4,132,158	-				+0.3
4,132,185	+				-1.4
4,132,185	+				-2.3
4,132,185	+				-1.4
4,132,185	+				-0.8
4,132,193	-				+0.1
4,132,193	-				-1.2
4,132,193	-				-0.3
4,132,193	-				-1.3
4,132,201	+				-0.3
4,132,201	+				-0.6
4,132,201	-				-0.4
4,132,202	+				-0.1
4,132,209	-				+0.7
4,132,209	-				+1.0
4,132,213	+				-1.1
4,132,251	-				+0.3
4,132,258	-				+0.4
4,132,272	-				-1.3
4,132,274	+				-0.6
4,132,289	+				-1.9
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