Strain Fitness in Sphingobium sp. HT1-2 around GFF4105

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4104 and GFF4105 overlap by 1 nucleotidesGFF4105 and GFF4106 are separated by 140 nucleotides GFF4104 - Peptide chain release factor 1, at 4,123,693 to 4,124,784 GFF4104 GFF4105 - Histidyl-tRNA synthetase (EC 6.1.1.21), at 4,124,784 to 4,126,136 GFF4105 GFF4106 - PDZ domain family protein, at 4,126,277 to 4,128,208 GFF4106 Position (kb) 4124 4125 4126 4127Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4124.782 kb on + strandat 4124.784 kb on - strandat 4124.832 kb on - strandat 4124.832 kb on - strandat 4124.842 kb on - strandat 4124.847 kb on - strandat 4124.865 kb on - strandat 4124.865 kb on - strandat 4126.198 kb on + strandat 4126.206 kb on - strandat 4126.227 kb on + strandat 4126.227 kb on + strandat 4126.227 kb on + strandat 4126.227 kb on + strandat 4126.227 kb on + strandat 4126.235 kb on - strandat 4126.235 kb on - strandat 4126.240 kb on - strandat 4126.245 kb on + strandat 4126.245 kb on - strandat 4126.245 kb on - strandat 4126.252 kb on + strandat 4126.274 kb on + strandat 4126.281 kb on + strandat 4126.282 kb on + strandat 4126.295 kb on - strandat 4126.301 kb on - strandat 4126.301 kb on - strandat 4126.321 kb on + strandat 4126.328 kb on - strandat 4126.343 kb on + strandat 4126.346 kb on - strandat 4126.353 kb on + strandat 4126.353 kb on + strandat 4126.381 kb on - strandat 4126.396 kb on + strandat 4126.402 kb on + strandat 4126.403 kb on + strandat 4126.403 kb on + strandat 4126.404 kb on - strandat 4126.404 kb on - strandat 4126.404 kb on - strandat 4126.407 kb on + strandat 4126.408 kb on + strandat 4126.408 kb on + strandat 4126.436 kb on + strandat 4126.439 kb on - strandat 4126.454 kb on - strandat 4126.457 kb on + strandat 4126.475 kb on - strand, within GFF4106at 4126.477 kb on + strand, within GFF4106at 4126.509 kb on + strand, within GFF4106at 4126.515 kb on - strand, within GFF4106at 4126.519 kb on + strand, within GFF4106at 4126.522 kb on - strand, within GFF4106at 4126.527 kb on - strand, within GFF4106at 4126.545 kb on + strand, within GFF4106at 4126.545 kb on + strand, within GFF4106at 4126.545 kb on + strand, within GFF4106at 4126.545 kb on + strand, within GFF4106at 4126.545 kb on + strand, within GFF4106at 4126.546 kb on - strand, within GFF4106at 4126.553 kb on - strand, within GFF4106at 4126.553 kb on - strand, within GFF4106at 4126.553 kb on - strand, within GFF4106at 4126.553 kb on - strand, within GFF4106at 4126.553 kb on - strand, within GFF4106at 4126.553 kb on - strand, within GFF4106at 4126.553 kb on - strand, within GFF4106at 4126.553 kb on - strand, within GFF4106at 4126.558 kb on - strand, within GFF4106at 4126.580 kb on + strand, within GFF4106at 4126.585 kb on + strand, within GFF4106at 4126.585 kb on + strand, within GFF4106at 4126.588 kb on - strand, within GFF4106at 4126.588 kb on - strand, within GFF4106at 4126.596 kb on - strand, within GFF4106at 4126.600 kb on + strand, within GFF4106at 4126.615 kb on - strand, within GFF4106at 4126.622 kb on - strand, within GFF4106at 4126.643 kb on - strand, within GFF4106at 4126.644 kb on - strand, within GFF4106at 4126.645 kb on - strand, within GFF4106at 4126.658 kb on - strand, within GFF4106at 4126.663 kb on + strand, within GFF4106at 4126.668 kb on + strand, within GFF4106at 4126.668 kb on + strand, within GFF4106at 4126.673 kb on + strand, within GFF4106at 4126.676 kb on - strand, within GFF4106at 4126.686 kb on + strand, within GFF4106at 4126.689 kb on - strand, within GFF4106at 4126.702 kb on + strand, within GFF4106at 4126.718 kb on + strand, within GFF4106at 4126.718 kb on + strand, within GFF4106at 4126.718 kb on + strand, within GFF4106at 4126.726 kb on - strand, within GFF4106at 4126.726 kb on - strand, within GFF4106at 4126.728 kb on + strand, within GFF4106at 4126.764 kb on + strand, within GFF4106at 4126.772 kb on - strand, within GFF4106at 4126.780 kb on + strand, within GFF4106at 4126.788 kb on - strand, within GFF4106at 4126.794 kb on + strand, within GFF4106at 4126.802 kb on + strand, within GFF4106at 4126.802 kb on - strand, within GFF4106at 4126.807 kb on + strand, within GFF4106at 4126.819 kb on + strand, within GFF4106at 4126.819 kb on + strand, within GFF4106at 4126.819 kb on + strand, within GFF4106at 4126.819 kb on + strand, within GFF4106at 4126.822 kb on - strand, within GFF4106at 4126.823 kb on + strand, within GFF4106at 4126.827 kb on - strand, within GFF4106at 4126.827 kb on - strand, within GFF4106at 4126.828 kb on + strand, within GFF4106at 4126.828 kb on + strand, within GFF4106at 4126.849 kb on + strand, within GFF4106at 4126.881 kb on - strand, within GFF4106at 4126.893 kb on + strand, within GFF4106at 4126.893 kb on + strand, within GFF4106at 4126.893 kb on + strand, within GFF4106at 4126.895 kb on - strand, within GFF4106at 4126.901 kb on - strand, within GFF4106at 4126.901 kb on - strand, within GFF4106at 4126.908 kb on + strand, within GFF4106at 4126.908 kb on + strand, within GFF4106at 4126.919 kb on + strand, within GFF4106at 4126.924 kb on + strand, within GFF4106at 4126.927 kb on - strand, within GFF4106at 4126.929 kb on + strand, within GFF4106at 4126.932 kb on - strand, within GFF4106at 4126.937 kb on - strand, within GFF4106at 4126.970 kb on + strand, within GFF4106at 4126.972 kb on - strand, within GFF4106at 4126.977 kb on + strand, within GFF4106at 4126.977 kb on + strand, within GFF4106at 4126.978 kb on - strand, within GFF4106at 4126.982 kb on + strand, within GFF4106at 4126.982 kb on + strand, within GFF4106at 4127.012 kb on - strand, within GFF4106at 4127.018 kb on + strand, within GFF4106at 4127.018 kb on + strand, within GFF4106at 4127.018 kb on + strand, within GFF4106at 4127.020 kb on + strand, within GFF4106at 4127.020 kb on + strand, within GFF4106at 4127.020 kb on + strand, within GFF4106at 4127.020 kb on + strand, within GFF4106at 4127.020 kb on + strand, within GFF4106at 4127.020 kb on + strand, within GFF4106at 4127.020 kb on + strand, within GFF4106at 4127.020 kb on + strand, within GFF4106at 4127.020 kb on + strand, within GFF4106at 4127.020 kb on + strand, within GFF4106at 4127.020 kb on + strand, within GFF4106at 4127.020 kb on + strand, within GFF4106at 4127.020 kb on + strand, within GFF4106at 4127.026 kb on - strand, within GFF4106at 4127.026 kb on - strand, within GFF4106at 4127.028 kb on - strand, within GFF4106at 4127.028 kb on - strand, within GFF4106at 4127.028 kb on - strand, within GFF4106at 4127.028 kb on - strand, within GFF4106at 4127.028 kb on - strand, within GFF4106at 4127.028 kb on - strand, within GFF4106at 4127.085 kb on - strand, within GFF4106at 4127.134 kb on + strand, within GFF4106

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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4,124,782 + +1.5
4,124,784 - +0.2
4,124,832 - -1.3
4,124,832 - +0.4
4,124,842 - -0.4
4,124,847 - -2.3
4,124,865 - -1.6
4,124,865 - +0.1
4,126,198 + -0.0
4,126,206 - -0.3
4,126,227 + +0.6
4,126,227 + -3.0
4,126,227 + -0.4
4,126,227 + -1.9
4,126,227 + +0.3
4,126,235 - -1.0
4,126,235 - -1.6
4,126,240 - +0.4
4,126,245 + -1.1
4,126,245 - -0.4
4,126,245 - -0.2
4,126,252 + +0.8
4,126,274 + +0.4
4,126,281 + -1.3
4,126,282 + +0.3
4,126,295 - -0.5
4,126,301 - +0.4
4,126,301 - -1.0
4,126,321 + -0.4
4,126,328 - +0.8
4,126,343 + -0.9
4,126,346 - -1.7
4,126,353 + +0.4
4,126,353 + +0.5
4,126,381 - +0.8
4,126,396 + -1.4
4,126,402 + -0.6
4,126,403 + +1.3
4,126,403 + -1.0
4,126,404 - -0.4
4,126,404 - -0.5
4,126,404 - -1.6
4,126,407 + -0.6
4,126,408 + -2.8
4,126,408 + -1.2
4,126,436 + -0.6
4,126,439 - -0.6
4,126,454 - -0.7
4,126,457 + -0.1
4,126,475 - GFF4106 0.10 -0.6
4,126,477 + GFF4106 0.10 -0.8
4,126,509 + GFF4106 0.12 +0.1
4,126,515 - GFF4106 0.12 +0.4
4,126,519 + GFF4106 0.13 +0.6
4,126,522 - GFF4106 0.13 -0.2
4,126,527 - GFF4106 0.13 -1.0
4,126,545 + GFF4106 0.14 -0.3
4,126,545 + GFF4106 0.14 +0.6
4,126,545 + GFF4106 0.14 -3.1
4,126,545 + GFF4106 0.14 +0.0
4,126,545 + GFF4106 0.14 +0.1
4,126,546 - GFF4106 0.14 +0.4
4,126,553 - GFF4106 0.14 -0.6
4,126,553 - GFF4106 0.14 -0.5
4,126,553 - GFF4106 0.14 -1.7
4,126,553 - GFF4106 0.14 +0.3
4,126,553 - GFF4106 0.14 -0.2
4,126,553 - GFF4106 0.14 +1.3
4,126,553 - GFF4106 0.14 -1.0
4,126,553 - GFF4106 0.14 -1.1
4,126,558 - GFF4106 0.15 +0.7
4,126,580 + GFF4106 0.16 +0.0
4,126,585 + GFF4106 0.16 +1.3
4,126,585 + GFF4106 0.16 -0.5
4,126,588 - GFF4106 0.16 +1.7
4,126,588 - GFF4106 0.16 -2.0
4,126,596 - GFF4106 0.17 -2.0
4,126,600 + GFF4106 0.17 -0.3
4,126,615 - GFF4106 0.17 -1.7
4,126,622 - GFF4106 0.18 -1.2
4,126,643 - GFF4106 0.19 +0.0
4,126,644 - GFF4106 0.19 -0.7
4,126,645 - GFF4106 0.19 +0.3
4,126,658 - GFF4106 0.20 -0.3
4,126,663 + GFF4106 0.20 -0.3
4,126,668 + GFF4106 0.20 -1.2
4,126,668 + GFF4106 0.20 -0.5
4,126,673 + GFF4106 0.20 -0.7
4,126,676 - GFF4106 0.21 +0.8
4,126,686 + GFF4106 0.21 -0.8
4,126,689 - GFF4106 0.21 -1.5
4,126,702 + GFF4106 0.22 +0.3
4,126,718 + GFF4106 0.23 -2.4
4,126,718 + GFF4106 0.23 -0.6
4,126,718 + GFF4106 0.23 -0.0
4,126,726 - GFF4106 0.23 +0.8
4,126,726 - GFF4106 0.23 -0.0
4,126,728 + GFF4106 0.23 +0.8
4,126,764 + GFF4106 0.25 -0.3
4,126,772 - GFF4106 0.26 -1.0
4,126,780 + GFF4106 0.26 -0.3
4,126,788 - GFF4106 0.26 +0.6
4,126,794 + GFF4106 0.27 -2.5
4,126,802 + GFF4106 0.27 -0.3
4,126,802 - GFF4106 0.27 -0.6
4,126,807 + GFF4106 0.27 -2.2
4,126,819 + GFF4106 0.28 -1.2
4,126,819 + GFF4106 0.28 +0.1
4,126,819 + GFF4106 0.28 -1.6
4,126,819 + GFF4106 0.28 -0.3
4,126,822 - GFF4106 0.28 +0.3
4,126,823 + GFF4106 0.28 -2.2
4,126,827 - GFF4106 0.28 +0.8
4,126,827 - GFF4106 0.28 -2.2
4,126,828 + GFF4106 0.29 -0.9
4,126,828 + GFF4106 0.29 -0.7
4,126,849 + GFF4106 0.30 -2.0
4,126,881 - GFF4106 0.31 +0.3
4,126,893 + GFF4106 0.32 -0.6
4,126,893 + GFF4106 0.32 -0.1
4,126,893 + GFF4106 0.32 +0.9
4,126,895 - GFF4106 0.32 +1.4
4,126,901 - GFF4106 0.32 -0.2
4,126,901 - GFF4106 0.32 -0.7
4,126,908 + GFF4106 0.33 -0.7
4,126,908 + GFF4106 0.33 -0.8
4,126,919 + GFF4106 0.33 -0.1
4,126,924 + GFF4106 0.33 -1.6
4,126,927 - GFF4106 0.34 +0.3
4,126,929 + GFF4106 0.34 +0.6
4,126,932 - GFF4106 0.34 +0.4
4,126,937 - GFF4106 0.34 +0.0
4,126,970 + GFF4106 0.36 -1.7
4,126,972 - GFF4106 0.36 -0.6
4,126,977 + GFF4106 0.36 -1.4
4,126,977 + GFF4106 0.36 +0.3
4,126,978 - GFF4106 0.36 -1.5
4,126,982 + GFF4106 0.36 -0.2
4,126,982 + GFF4106 0.36 -0.6
4,127,012 - GFF4106 0.38 -1.6
4,127,018 + GFF4106 0.38 -0.3
4,127,018 + GFF4106 0.38 -1.4
4,127,018 + GFF4106 0.38 -1.9
4,127,020 + GFF4106 0.38 +0.8
4,127,020 + GFF4106 0.38 -1.1
4,127,020 + GFF4106 0.38 -1.5
4,127,020 + GFF4106 0.38 -0.5
4,127,020 + GFF4106 0.38 -1.2
4,127,020 + GFF4106 0.38 -0.7
4,127,020 + GFF4106 0.38 +0.9
4,127,020 + GFF4106 0.38 -0.1
4,127,020 + GFF4106 0.38 +0.5
4,127,020 + GFF4106 0.38 -0.8
4,127,020 + GFF4106 0.38 +1.4
4,127,020 + GFF4106 0.38 +2.6
4,127,020 + GFF4106 0.38 -1.0
4,127,026 - GFF4106 0.39 +0.5
4,127,026 - GFF4106 0.39 +0.8
4,127,028 - GFF4106 0.39 -1.4
4,127,028 - GFF4106 0.39 -2.4
4,127,028 - GFF4106 0.39 +1.7
4,127,028 - GFF4106 0.39 -1.8
4,127,028 - GFF4106 0.39 -0.7
4,127,028 - GFF4106 0.39 -0.1
4,127,085 - GFF4106 0.42 -1.8
4,127,134 + GFF4106 0.44 -0.2

Or see this region's nucleotide sequence